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Conserved domains on  [gi|90111216|ref|NP_415640|]
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putative inner membrane protein YmfA [Escherichia coli str. K-12 substr. MG1655]

Protein Classification

DUF3592 domain-containing protein( domain architecture ID 10573040)

DUF3592 domain-containing protein similar to Escherichia coli inner membrane protein YmfA and Pseudomonas aeruginosa immune protein Tsi4 that plays a role in preventing early activation of toxin Tse4

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3592 pfam12158
Protein of unknown function (DUF3592); This family of proteins is functionally uncharacterized. ...
 7-140 8.85e-19

Protein of unknown function (DUF3592); This family of proteins is functionally uncharacterized.This family of proteins is found in bacteria, archaea, eukaryotes and viruses. Proteins in this family are typically between 150 and 242 amino acids in length.


:

Pssm-ID: 432368  Cd Length: 136  Bit Score: 77.12  E-value: 8.85e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111216     7 VFFRIFLGIGLVLILISVVVFYNQFTYSKDAIHTEGVIVDtvwHSSHSHRTGKDGSWYPVVAFRPTPDYTLIFNSSIGSD 86
Cdd:pfam12158   6 LVALLLLVIGLVLLYLGGRLLVAAARASRTWPRTEGTVVD---SRVEVSDSSRSRTYHPVVEYRYADGERVRFGGGVVSN 82

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 90111216    87 FYEDSEGDKVNVYYSPGHPEKAEINNPWVNFFKWGFIGIMGVIFIAVGLLISMP 140
Cdd:pfam12158  83 PPGYRVGDRVTVYYDPANPGQAAIDRRGALWGVALLLGLLGALFLALGLLLLLA 136
 
Name Accession Description Interval E-value
DUF3592 pfam12158
Protein of unknown function (DUF3592); This family of proteins is functionally uncharacterized. ...
 7-140 8.85e-19

Protein of unknown function (DUF3592); This family of proteins is functionally uncharacterized.This family of proteins is found in bacteria, archaea, eukaryotes and viruses. Proteins in this family are typically between 150 and 242 amino acids in length.


Pssm-ID: 432368  Cd Length: 136  Bit Score: 77.12  E-value: 8.85e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111216     7 VFFRIFLGIGLVLILISVVVFYNQFTYSKDAIHTEGVIVDtvwHSSHSHRTGKDGSWYPVVAFRPTPDYTLIFNSSIGSD 86
Cdd:pfam12158   6 LVALLLLVIGLVLLYLGGRLLVAAARASRTWPRTEGTVVD---SRVEVSDSSRSRTYHPVVEYRYADGERVRFGGGVVSN 82

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 90111216    87 FYEDSEGDKVNVYYSPGHPEKAEINNPWVNFFKWGFIGIMGVIFIAVGLLISMP 140
Cdd:pfam12158  83 PPGYRVGDRVTVYYDPANPGQAAIDRRGALWGVALLLGLLGALFLALGLLLLLA 136
 
Name Accession Description Interval E-value
DUF3592 pfam12158
Protein of unknown function (DUF3592); This family of proteins is functionally uncharacterized. ...
 7-140 8.85e-19

Protein of unknown function (DUF3592); This family of proteins is functionally uncharacterized.This family of proteins is found in bacteria, archaea, eukaryotes and viruses. Proteins in this family are typically between 150 and 242 amino acids in length.


Pssm-ID: 432368  Cd Length: 136  Bit Score: 77.12  E-value: 8.85e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111216     7 VFFRIFLGIGLVLILISVVVFYNQFTYSKDAIHTEGVIVDtvwHSSHSHRTGKDGSWYPVVAFRPTPDYTLIFNSSIGSD 86
Cdd:pfam12158   6 LVALLLLVIGLVLLYLGGRLLVAAARASRTWPRTEGTVVD---SRVEVSDSSRSRTYHPVVEYRYADGERVRFGGGVVSN 82

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 90111216    87 FYEDSEGDKVNVYYSPGHPEKAEINNPWVNFFKWGFIGIMGVIFIAVGLLISMP 140
Cdd:pfam12158  83 PPGYRVGDRVTVYYDPANPGQAAIDRRGALWGVALLLGLLGALFLALGLLLLLA 136
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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