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Conserved domains on  [gi|16129124|ref|NP_415679|]
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DUF1398 domain-containing protein YcgX [Escherichia coli str. K-12 substr. MG1655]

Protein Classification

DUF1398 domain-containing protein( domain architecture ID 10537469)

DUF1398 domain-containing protein similar to Escherichia coli proteins YdfO, YbcV and YcgX

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
DUF1398 pfam07166
Protein of unknown function (DUF1398); This family consists of several hypothetical ...
8-126 2.35e-57

Protein of unknown function (DUF1398); This family consists of several hypothetical Enterobacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Escherichia coli and Salmonella species. The function of this family is unknown.


:

Pssm-ID: 429329  Cd Length: 119  Bit Score: 173.67  E-value: 2.35e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129124     8 QKMFEQVRKEQNFSWFYSELKHHRIAHYIYYLATDNIRIITHDDTVLLLRGTRNLLKVSTTKNPAKIKEAALLHICGKST 87
Cdd:pfam07166   1 KKAFEKVRSGADFPAFIQELKRHGVSHYIYYVATGNTRYVGDNDFTVSSKGNYEPLKVAPSANAALIKQAVKRHQQGEIT 80
                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 16129124    88 FREYCSTLAGAGVFRWVTDVNHNKRSYYAIDNTLLYIED 126
Cdd:pfam07166  81 FETFCEDLAKAGVFKWITDLNEMTRSYYDKDNSLLLAEQ 119
 
Name Accession Description Interval E-value
DUF1398 pfam07166
Protein of unknown function (DUF1398); This family consists of several hypothetical ...
8-126 2.35e-57

Protein of unknown function (DUF1398); This family consists of several hypothetical Enterobacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Escherichia coli and Salmonella species. The function of this family is unknown.


Pssm-ID: 429329  Cd Length: 119  Bit Score: 173.67  E-value: 2.35e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129124     8 QKMFEQVRKEQNFSWFYSELKHHRIAHYIYYLATDNIRIITHDDTVLLLRGTRNLLKVSTTKNPAKIKEAALLHICGKST 87
Cdd:pfam07166   1 KKAFEKVRSGADFPAFIQELKRHGVSHYIYYVATGNTRYVGDNDFTVSSKGNYEPLKVAPSANAALIKQAVKRHQQGEIT 80
                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 16129124    88 FREYCSTLAGAGVFRWVTDVNHNKRSYYAIDNTLLYIED 126
Cdd:pfam07166  81 FETFCEDLAKAGVFKWITDLNEMTRSYYDKDNSLLLAEQ 119
YbcV COG5562
Prophage-encoded protein YbcV, DUF1398 family [Mobilome: prophages, transposons];
1-132 1.28e-45

Prophage-encoded protein YbcV, DUF1398 family [Mobilome: prophages, transposons];


Pssm-ID: 444304  Cd Length: 132  Bit Score: 144.69  E-value: 1.28e-45
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129124   1 MDQVVVFQKMFEQVRKEQNFSWFYSELKHHRIAHYIYYLATDNIRIITHDDTVLLLRGTRNLLKVSTTKNPAKIKEAALL 80
Cdd:COG5562   1 MFTLEQIQAAFEKVKSGADFPQFVQELKAAGVEHYIYDVADGNTTYYGEDGYSVVLPTNYVALPVAPTFDAEAVKAALRA 80
                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|..
gi 16129124  81 HICGKSTFREYCSTLAGAGVFRWVTDVNHNKRSYYAIDNTLLYIEDVENNKP 132
Cdd:COG5562  81 HQAGETDYPTFCKQAAAAGVFKWVVDLTGRTVTYYGRDGELLVIEPIPGVEP 132
 
Name Accession Description Interval E-value
DUF1398 pfam07166
Protein of unknown function (DUF1398); This family consists of several hypothetical ...
8-126 2.35e-57

Protein of unknown function (DUF1398); This family consists of several hypothetical Enterobacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Escherichia coli and Salmonella species. The function of this family is unknown.


Pssm-ID: 429329  Cd Length: 119  Bit Score: 173.67  E-value: 2.35e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129124     8 QKMFEQVRKEQNFSWFYSELKHHRIAHYIYYLATDNIRIITHDDTVLLLRGTRNLLKVSTTKNPAKIKEAALLHICGKST 87
Cdd:pfam07166   1 KKAFEKVRSGADFPAFIQELKRHGVSHYIYYVATGNTRYVGDNDFTVSSKGNYEPLKVAPSANAALIKQAVKRHQQGEIT 80
                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 16129124    88 FREYCSTLAGAGVFRWVTDVNHNKRSYYAIDNTLLYIED 126
Cdd:pfam07166  81 FETFCEDLAKAGVFKWITDLNEMTRSYYDKDNSLLLAEQ 119
YbcV COG5562
Prophage-encoded protein YbcV, DUF1398 family [Mobilome: prophages, transposons];
1-132 1.28e-45

Prophage-encoded protein YbcV, DUF1398 family [Mobilome: prophages, transposons];


Pssm-ID: 444304  Cd Length: 132  Bit Score: 144.69  E-value: 1.28e-45
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129124   1 MDQVVVFQKMFEQVRKEQNFSWFYSELKHHRIAHYIYYLATDNIRIITHDDTVLLLRGTRNLLKVSTTKNPAKIKEAALL 80
Cdd:COG5562   1 MFTLEQIQAAFEKVKSGADFPQFVQELKAAGVEHYIYDVADGNTTYYGEDGYSVVLPTNYVALPVAPTFDAEAVKAALRA 80
                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|..
gi 16129124  81 HICGKSTFREYCSTLAGAGVFRWVTDVNHNKRSYYAIDNTLLYIEDVENNKP 132
Cdd:COG5562  81 HQAGETDYPTFCKQAAAAGVFKWVVDLTGRTVTYYGRDGELLVIEPIPGVEP 132
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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