NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|49176207|ref|NP_416791|]
View 

NADH:quinone oxidoreductase subunit A [Escherichia coli str. K-12 substr. MG1655]

Protein Classification

NADH-quinone oxidoreductase subunit A( domain architecture ID 10012780)

NADH-quinone oxidoreductase subunit A (NuoA) is part of the membrane domain of complex I of the respiratory chain that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

EC:  1.6.5.9
Gene Ontology:  GO:0048038|GO:0016655|GO:0005886
PubMed:  23417064|24059520

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 6-126 1.91e-63

NADH:ubiquinone oxidoreductase subunit A; Validated


:

Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 189.69  E-value: 1.91e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 49176207    6 STEVIAHHWAFAIFLIVAIGLCCLMLVGGWFLGGRARARSKNVPFESGIDSVGSARLRLSAKFYLVAMFFVIFDVEALYL 85
Cdd:PRK06602   1 MTEVLAHYLPFLIFLIVAIGLGILLLVAGKLLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFL 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 49176207   86 FAWSTSIRESGWVGFVEAAIFIFVLLAGLVYLVRIGALDWT 126
Cdd:PRK06602  81 FPWAVSFREIGWLGFVEAMIFILVLLVGLVYLWRKGALDWE 121
 
Name Accession Description Interval E-value
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 6-126 1.91e-63

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 189.69  E-value: 1.91e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 49176207    6 STEVIAHHWAFAIFLIVAIGLCCLMLVGGWFLGGRARARSKNVPFESGIDSVGSARLRLSAKFYLVAMFFVIFDVEALYL 85
Cdd:PRK06602   1 MTEVLAHYLPFLIFLIVAIGLGILLLVAGKLLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFL 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 49176207   86 FAWSTSIRESGWVGFVEAAIFIFVLLAGLVYLVRIGALDWT 126
Cdd:PRK06602  81 FPWAVSFREIGWLGFVEAMIFILVLLVGLVYLWRKGALDWE 121
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 9-125 1.66e-46

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 146.80  E-value: 1.66e-46
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 49176207   9 VIAHHWAFAIFLIVAIGLCCLMLVGGWFLGGRARARSKNVPFESGIDSVGSARLRLSAKFYLVAMFFVIFDVEALYLFAW 88
Cdd:COG0838   1 MLSDYLPILIFLLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPW 80

                        90       100       110
                ....*....|....*....|....*....|....*..
gi 49176207  89 STSIRESGWVGFVEAAIFIFVLLAGLVYLVRIGALDW 125
Cdd:COG0838  81 AVVFRELGWFGLIEMLVFIAILLVGLIYAWKKGALEW 117
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
31-124 1.99e-37

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 122.92  E-value: 1.99e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 49176207    31 LVGGWFLGGRARARSKNVPFESGIDSVGSARLRLSAKFYLVAMFFVIFDVEALYLFAWSTSIRESGWVGFVEAAIFIFVL 110
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGWFGFVEMLIFIAIL 80

                          90
                  ....*....|....
gi 49176207   111 LAGLVYLVRIGALD 124
Cdd:pfam00507  81 LVGLVYAWKKGALE 94
 
Name Accession Description Interval E-value
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 6-126 1.91e-63

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 189.69  E-value: 1.91e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 49176207    6 STEVIAHHWAFAIFLIVAIGLCCLMLVGGWFLGGRARARSKNVPFESGIDSVGSARLRLSAKFYLVAMFFVIFDVEALYL 85
Cdd:PRK06602   1 MTEVLAHYLPFLIFLIVAIGLGILLLVAGKLLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFL 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 49176207   86 FAWSTSIRESGWVGFVEAAIFIFVLLAGLVYLVRIGALDWT 126
Cdd:PRK06602  81 FPWAVSFREIGWLGFVEAMIFILVLLVGLVYLWRKGALDWE 121
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 9-125 1.66e-46

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 146.80  E-value: 1.66e-46
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 49176207   9 VIAHHWAFAIFLIVAIGLCCLMLVGGWFLGGRARARSKNVPFESGIDSVGSARLRLSAKFYLVAMFFVIFDVEALYLFAW 88
Cdd:COG0838   1 MLSDYLPILIFLLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPW 80

                        90       100       110
                ....*....|....*....|....*....|....*..
gi 49176207  89 STSIRESGWVGFVEAAIFIFVLLAGLVYLVRIGALDW 125
Cdd:COG0838  81 AVVFRELGWFGLIEMLVFIAILLVGLIYAWKKGALEW 117
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
31-124 1.99e-37

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 122.92  E-value: 1.99e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 49176207    31 LVGGWFLGGRARARSKNVPFESGIDSVGSARLRLSAKFYLVAMFFVIFDVEALYLFAWSTSIRESGWVGFVEAAIFIFVL 110
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGWFGFVEMLIFIAIL 80

                          90
                  ....*....|....
gi 49176207   111 LAGLVYLVRIGALD 124
Cdd:pfam00507  81 LVGLVYAWKKGALE 94
ndhC CHL00022
NADH dehydrogenase subunit 3
 16-126 1.84e-21

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 83.11  E-value: 1.84e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 49176207   16 FAIFLIVAIGLCCLMLVGGWFLGGRARARSKNVPFESGIDSVGSARLRLSAKFYLVAMFFVIFDVEALYLFAWSTSIRES 95
Cdd:CHL00022  10 FWAFLIISSLIPILAFLISGLLAPISKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVL 89

                         90       100       110
                 ....*....|....*....|....*....|.
gi 49176207   96 GWVGFVEAAIFIFVLLAGLVYLVRIGALDWT 126
Cdd:CHL00022  90 GVSAFIEALIFVLILIVGLVYAWRKGALEWS 120
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
17-125 2.37e-19

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 77.86  E-value: 2.37e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 49176207   17 AIFLIVAIGLCCLMLVGGWFLGGRARARSKNVPFESGIDSVGSARLRLSAKFYLVAMFFVIFDVEALYLFAWSTSIRESG 96
Cdd:PRK07756  13 LIFLLLGILLPVVALTLGRMLRPNKPSAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYPWAVAYDKLG 92

                         90       100
                 ....*....|....*....|....*....
gi 49176207   97 WVGFVEAAIFIFVLLAGLVYLVRIGALDW 125
Cdd:PRK07756  93 LFALIEMLIFVVMLLVGLAYAWKKKVLQW 121
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 18-126 9.58e-19

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 76.05  E-value: 9.58e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 49176207   18 IFLIVAIGLCCLMLVGGWFLGGRARA-RSKNVPFESGIDSVGSARLRLSAKFYLVAMFFVIFDVEALYLFAWSTSIRESG 96
Cdd:MTH00148   6 LSLLFALILSPVLLLLGLVLSKRSYSdREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQSLGSSF 85

                         90       100       110
                 ....*....|....*....|....*....|.
gi 49176207   97 WVGFVEA-AIFIFVLLAGLVYLVRIGALDWT 126
Cdd:MTH00148  86 SVWSLTSlFIFLLILILGLFHEWNEGSLDWV 116
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 16-125 6.91e-16

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 68.85  E-value: 6.91e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 49176207   16 FAIFLIVAIGLCCLMLVGGWFLGGRARARSKNVPFESGIDSVGSARLRLSAKFYLVAMFFVIFDVEALYLFA--WSTSIR 93
Cdd:MTH00042   4 LIFFLLIILILTSLLLLAGHFLPSRSPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPlpPATLIT 83

                         90       100       110
                 ....*....|....*....|....*....|..
gi 49176207   94 ESGWVGFVeAAIFIFVLLAGLVYLVRIGALDW 125
Cdd:MTH00042  84 NPSTLLPI-SLIFLIILTIGLVYEWVNGGLEW 114
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
7-125 7.11e-16

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 68.93  E-value: 7.11e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 49176207    7 TEVIAHHWAFAIFLIVAIGLCCLMLVG------GWFLGGRARARSKNVPFESGIDSVGSARlRLSAKFYLVAMFFVIFDV 80
Cdd:PRK08489   2 SHEDLSHPYFGVFVLLVLTFVAFFLTTrlarfiSRKLAQKNTEKLKLAIYECGPEPVKQPN-RISSHFYIMALLFILFDV 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 49176207   81 EALYLFAWSTSIRESGWVGFVEAAIFIFVLLAGLVYLVRIGALDW 125
Cdd:PRK08489  81 EIVFMFPWAVDFKLLGLFGLIEMLLFIVLLTIGFIYAWKKGALEW 125
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 15-126 4.75e-14

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 64.31  E-value: 4.75e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 49176207   15 AFAIFLIVAiglcclmlvgGWFLGGRARARSKNVPFESGIDSVGSAR--LRLSAKFYLVAMFFVIFDVEALYLFAWSTSI 92
Cdd:PRK07928  16 AFAVVSVVV----------ASLVGPKRYNRAKLEAYECGIEPTPQPAggGRFPVKYYLTAMLFIVFDIEIVFLYPWAVSF 85

                         90       100       110
                 ....*....|....*....|....*....|....
gi 49176207   93 RESGWVGFVEAAIFIFVLLAGLVYLVRIGALDWT 126
Cdd:PRK07928  86 DALGVFGLVEMALFMLTVFVAYAYVWRRGGLEWD 119
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 20-125 2.11e-13

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 62.32  E-value: 2.11e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 49176207   20 LIVAIGLCCLMLVGGWFLGGRARA-RSKNVPFESGIDSVGSARLRLSAKFYLVAMFFVIFDVEALYLFAWSTSIRES-GW 97
Cdd:MTH00202   8 SILSILISSLLFLVSWMLSFRSLMdREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLVLKSSwSK 87

                         90       100
                 ....*....|....*....|....*...
gi 49176207   98 VGFVEAAIFIFVLLAGLVYLVRIGALDW 125
Cdd:MTH00202  88 GGLLGGTIFLLILIGGLIHEWKEGSLDW 115
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 18-125 2.34e-13

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 62.42  E-value: 2.34e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 49176207   18 IFLIVAIGLCCLMLVGGWFLGGRARARSKNVPFESGIDSVGSARLRLSAKFYLVAMFFVIFDVEALYLFAWSTSIRESGW 97
Cdd:MTH00055  10 ILLLFSIGLSTVISGASYIVGVKQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWCVVYNQIGL 89

                         90       100
                 ....*....|....*....|....*...
gi 49176207   98 VGFVEAAIFIFVLLAGLVYLVRIGALDW 125
Cdd:MTH00055  90 FGFWVMYLFLIILTIGLIYEWVKGGLEW 117
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 16-125 3.77e-13

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 61.45  E-value: 3.77e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 49176207   16 FAIFLIVAIGLCCLMLVGGWFLGGRARARSKNVPFESGIDSVGSARLRLSAKFYLVAMFFVIFDVE-ALYL-FAWSTSir 93
Cdd:MTH00203   4 IMLFFLIALLLSLILLFIAFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEiALLLpLPWSNQ-- 81

                         90       100       110
                 ....*....|....*....|....*....|..
gi 49176207   94 eSGWVGFVEAAIFIFVLLAGLVYLVRIGALDW 125
Cdd:MTH00203  82 -LSSLSLLLAFLFLILLTLGLIYEWLQGGLEW 112
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 16-125 6.72e-13

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 60.95  E-value: 6.72e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 49176207   16 FAIFLIVAIGLCCLMLVGGWFLGGRARA-RSKNVPFESGIDSVGSARLRLSAKFYLVAMFFVIFDVE-----ALYLFAWS 89
Cdd:MTH00161   2 ILIILLIILLISIILMILASLLSKKSIMdREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEialllPMIFIFKT 81

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 49176207   90 TSIRESGWVGFveaaIFIFVLLAGLVYLVRIGALDW 125
Cdd:MTH00161  82 SNMMSWLITSS----FFILILLLGLYYEWNQGALEW 113
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 17-126 1.14e-12

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 60.64  E-value: 1.14e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 49176207   17 AIFLIVAIGLCCLMLVGGWFLGGRARA-RSKNVPFESGIDSVGSARLRLSAKFYLVAMFFVIFDVEALYLFAWSTSIRES 95
Cdd:MTH00012   5 MIPMMISLILPPLVLGAAWVLAARSTAdREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTILMTS 84

                         90       100       110
                 ....*....|....*....|....*....|..
gi 49176207   96 GWVGFV-EAAIFIFVLLAGLVYLVRIGALDWT 126
Cdd:MTH00012  85 TSKTVVyTSILFLLILVIGLIHEWREGSLDWS 116
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 18-125 1.41e-12

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 60.08  E-value: 1.41e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 49176207   18 IFLIVAIGLCCLMLVGGWFLGGRARARSKNVPFESGIDSVGSARLRLSAKFYLVAMFFVIFDVEALYLFAWSTSIRESGW 97
Cdd:MTH00018   5 ILLIFSVVLSALFSGASYFLGVKQPDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPWCVLYNQIAP 84

                         90       100
                 ....*....|....*....|....*...
gi 49176207   98 VGFVEAAIFIFVLLAGLVYLVRIGALDW 125
Cdd:MTH00018  85 FGFWTMVGFLFILTLGLIYEWIKGGLEW 112
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 49-125 1.72e-09

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 51.92  E-value: 1.72e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 49176207   49 PFESGIDSVGSARLRLSAKFYLVAMFFVIFDVE-ALYL-FAWSTSIRESGWVGFVEAAIFIfVLLAGLVYLVRIGALDW 125
Cdd:MTH00069  35 PYECGFDPLGSARLPFSIRFFLVAILFLLFDLEiALLLpTPWASQLNTPTNTLFWSTLILI-LLTLGLIYEWIQGGLEW 112
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 18-125 4.58e-09

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 51.09  E-value: 4.58e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 49176207   18 IFLIVAIGLCC-LMLVGGWFLGGRARARS------KNVPFESGIDSVGSARLRLSAKFYLVAMFFVIFDVEALYLFAWST 90
Cdd:MTH00030   8 IFFSTLLGVGIiLLLVSISFTLGNSRIGLtkpdseKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPWSI 87

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 49176207   91 SIRESGWVGFVEAAIFIFVLLAGLVYLVRIGALDW 125
Cdd:MTH00030  88 VFNQLNLFSFWIVYTFLIVLAIGLAYEWIKGGLEW 122
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 49-125 5.48e-09

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 50.69  E-value: 5.48e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 49176207   49 PFESGIDSVGSARLRLSAKFYLVAMFFVIFDVE-ALYL-FAWSTSIrESGWVGFVEAAIFIFVLLAGLVYLVRIGALDW 125
Cdd:MTH00136  37 PYECGFDPLGSARLPFSLRFFLVAILFLLFDLEiALLLpLPWGDQL-PSPLLTFFWATAVLILLTLGLIYEWLQGGLEW 114
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 46-126 2.19e-08

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 49.17  E-value: 2.19e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 49176207   46 KNVPFESGIDSVGSARLRLSAKFYLVAMFFVIFDVE-ALYL-FAWSTSIRESGwVGFVEAAIFIFVLLAGLVYLVRIGAL 123
Cdd:MTH00106  33 KASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEiALLLpLPWASQTNNLN-TMLTMALLLISLLALSLAYEWTQKGL 111


                 ...
gi 49176207  124 DWT 126
Cdd:MTH00106 112 EWT 114
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 49-126 2.67e-08

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 49.11  E-value: 2.67e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 49176207   49 PFESGIDSVGSARLRLSAKFYLVAMFFVIFDVE-ALYL-FAWSTSiRESGWVGFVEAAIFIFVLLAGLVYLVRIGALDWT 126
Cdd:MTH00113  36 PYECGFDPLGSARLPFSIRFFLVAILFLLFDLEiALLLpLPWAIN-LTTPTTTLTWATIILTLLTLGLIYEWLQGGLEWA 114
PRK06432 PRK06432
NADH dehydrogenase subunit A; Validated
 49-125 3.46e-08

NADH dehydrogenase subunit A; Validated


Pssm-ID: 102372  Cd Length: 144  Bit Score: 49.43  E-value: 3.46e-08
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 49176207   49 PFESGIDSVGSARLRLSAKFYLVAMFFVIFDVEALYLFAWSTSIRESGWVGFVEAAIFIFVLLAGLVYLVRIGALDW 125
Cdd:PRK06432  66 PYESGEVAREIWGGPSINQYYIVVLLFVVFDVDMLLLFPWAFDFKRLGLIPFIETLIFLAMPLFAVYYAFKMGYMRW 142
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH