NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|90111442|ref|NP_416972|]
View 

outer membrane protein assembly factor BamC [Escherichia coli str. K-12 substr. MG1655]

Protein Classification

outer membrane protein assembly factor BamC( domain architecture ID 10013864)

outer membrane protein assembly factor BamC is part of the beta-barrel assembly machinery (BAM), a multi-subunit complex that inserts proteins with beta-barrel topology into the outer membrane

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PRK11679 PRK11679
outer membrane protein assembly factor BamC;
1-344 0e+00

outer membrane protein assembly factor BamC;


:

Pssm-ID: 236955  Cd Length: 346  Bit Score: 652.41  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111442    1 MAYSVQKSRLAKVAGVSLVLLLAACSSDSRYKRQVSGDEAYLEAAPLAELHAPAGMILPVTSGDYAIPVTNGSGAVGKAL 80
Cdd:PRK11679   1 MAYSVQKSRVAKVAGVSLVMLLAACSSDQRYKRQVSGDESYLEAPPLKELHAPAGMILPLQNGDYDIPVTNGSGAVGKAL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111442   81 DIRPPAQPLALVSGARTQFTGDTASLLVENG-RGNTLWPQVVSVLQAKNYTITQRDDAGQTLTTDWVQWNRLDEDEQYRG 159
Cdd:PRK11679  81 DIRPPAQPLALLSGARTQFSGDTATLLLENSpENSKLWPQVVSVLQAKNYPIAKRDDASQTLTTDWVTWNRADEDVQYRG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111442  160 RYQISVKPQGYQQAVTVKLLNLEQAGKPVADAASMQRYSTEMMNVISAGLDKSATDAANAAQNRASTTMDVQSAADDTGL 239
Cdd:PRK11679 161 RYQISVKPQGYQQALTVKLLDLEQGGKPVTDPANIQRYNTEMLNLISAGLDKQATDEANAAANRLVGQIDVQSGADDTGL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111442  240 PMLVVRGPFNVVWQRLPAALEKVGMKVTDSTRSQGNMAVTYKPLSDSDWQELGASDPGLASGDYKLQVGDLDNRSSLQFI 319
Cdd:PRK11679 241 PVLIVRAPYNVVWQRLPAALEKVGMKVTDRTRSQGTVAVTYKPPSDSFWQELGAKDPELASGDYKLQVGDLDNRSSLQFI 320

                        330       340
                 ....*....|....*....|....*
gi 90111442  320 DPKGHTLTQSQNDALVAVFQAAFSK 344
Cdd:PRK11679 321 DPKGHPLTQSQNDALVAVFQAAFSK 345
 
Name Accession Description Interval E-value
PRK11679 PRK11679
outer membrane protein assembly factor BamC;
1-344 0e+00

outer membrane protein assembly factor BamC;


Pssm-ID: 236955  Cd Length: 346  Bit Score: 652.41  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111442    1 MAYSVQKSRLAKVAGVSLVLLLAACSSDSRYKRQVSGDEAYLEAAPLAELHAPAGMILPVTSGDYAIPVTNGSGAVGKAL 80
Cdd:PRK11679   1 MAYSVQKSRVAKVAGVSLVMLLAACSSDQRYKRQVSGDESYLEAPPLKELHAPAGMILPLQNGDYDIPVTNGSGAVGKAL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111442   81 DIRPPAQPLALVSGARTQFTGDTASLLVENG-RGNTLWPQVVSVLQAKNYTITQRDDAGQTLTTDWVQWNRLDEDEQYRG 159
Cdd:PRK11679  81 DIRPPAQPLALLSGARTQFSGDTATLLLENSpENSKLWPQVVSVLQAKNYPIAKRDDASQTLTTDWVTWNRADEDVQYRG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111442  160 RYQISVKPQGYQQAVTVKLLNLEQAGKPVADAASMQRYSTEMMNVISAGLDKSATDAANAAQNRASTTMDVQSAADDTGL 239
Cdd:PRK11679 161 RYQISVKPQGYQQALTVKLLDLEQGGKPVTDPANIQRYNTEMLNLISAGLDKQATDEANAAANRLVGQIDVQSGADDTGL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111442  240 PMLVVRGPFNVVWQRLPAALEKVGMKVTDSTRSQGNMAVTYKPLSDSDWQELGASDPGLASGDYKLQVGDLDNRSSLQFI 319
Cdd:PRK11679 241 PVLIVRAPYNVVWQRLPAALEKVGMKVTDRTRSQGTVAVTYKPPSDSFWQELGAKDPELASGDYKLQVGDLDNRSSLQFI 320

                        330       340
                 ....*....|....*....|....*
gi 90111442  320 DPKGHTLTQSQNDALVAVFQAAFSK 344
Cdd:PRK11679 321 DPKGHPLTQSQNDALVAVFQAAFSK 345
Lipoprotein_18 pfam06804
NlpB/DapX lipoprotein; This family consists of a number of bacterial lipoproteins often known ...
 47-335 8.40e-138

NlpB/DapX lipoprotein; This family consists of a number of bacterial lipoproteins often known as NlpB or DapX. This lipoprotein is detected in outer membrane vesicles in Escherichia coli and appears to be nonessential.


Pssm-ID: 429129  Cd Length: 297  Bit Score: 393.21  E-value: 8.40e-138
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111442    47 LAELHAPAGMILPVTSGDYAIPVTNGSGAVGKALDIRPPAQPLALVSGARTQFTGDTASLLVENGRGNtLWPQVVSVLQA 126
Cdd:pfam06804   1 LAPLKVPAGLILPEQNGEYDIPAVANQGAVGKQLDIRPPLQVLPLIEGSRVEESGDSATLLFENSKDE-LWQQVNDFLAE 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111442   127 KNYTITQRDDAGQTLTTDWVQ-----WNRLDEDEQYRGRYQ--ISVKPQGYQQAVTVKLLNLEQAG--KPVADAASMQRY 197
Cdd:pfam06804  80 NNIPIAKRDDASGTLETDWITnqeslWNRSDEDVQLRQRYRftISVKPHGRQAALSVSLLDLEEGDdvKEVTSPADKQRY 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111442   198 STEMMNVISAGLDKSATDAANAAQNRASTTMDVQSAADDTGLPMLVVRGPFNVVWQRLPAALEKVGMKVTDSTRSQGNMA 277
Cdd:pfam06804 160 EADMLNNVIAYLDQERRQAEAALANRQSGGIDVQLGADDNGLPVLIVRAPYNVVWDRLPLVLPKLGFTVEDRDRSQGTYF 239

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 90111442   278 VTYKPLSDSDWQELGASDPGLASGDYKLQVGDLDNRSSLQFIDPKGHTLTQSQNDALV 335
Cdd:pfam06804 240 VKYKAPSSGFWSSLGGDELDLDEGEYRLQLGDLGNRTSITFLDAKGKPLTQEQNDALV 297
BamC COG3317
Outer membrane beta-barrel protein assembly factor BamC [Cell wall/membrane/envelope ...
 7-343 1.39e-119

Outer membrane beta-barrel protein assembly factor BamC [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442546  Cd Length: 354  Bit Score: 348.88  E-value: 1.39e-119
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111442   7 KSRLAKVAGVSLVLLLAACSSDSRYKRqvSGDEAYLEAAPLAELHAPAGMILPVTSGDYAIPvtNGSGAVGKALDIRPPA 86
Cdd:COG3317   1 KLSVRLVLLLLLVLLLAGCSSLQRYFR--SGKVDYLSAPKLPPLEVPPDLTAPSQDDRYDIP--AGGAATGSEYDIRPPA 76

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111442  87 QPLALVSGARTQFTGDTASLLVENgRGNTLWPQVVSVLQAKNYTITQRDDAGQTLTTDWVQWNRLDED------------ 154
Cdd:COG3317  77 QVLPLVDGVRIERSGDQRWLVVDA-SPEQLWPQLREFWQENGFTIASEDPAAGVMETDWAENRAKIPDfirrtlldglys 155

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111442 155 EQYRGRYQISVKPQ-GYQQAVTVKLLNLEQAG------KPVADAASmQRYSTEMMNVISAGLDKSATDAANAAQNRASTT 227
Cdd:COG3317 156 TGERDRFRTRVERGvGGTTEIYVSHRGMEEVGdqkdstVWQPRPAD-PRLEAEMLNRLMVYLGADEEQAAAALAAAQVGG 234

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111442 228 MDVQSAADDTGLPMLVVRGPFNVVWQRLPAALEKVGMKVTDSTRSQGNMAVTYKPLSDSD----WQELGASDPGLASGDY 303
Cdd:COG3317 235 IRVQLGKDADGLPVLIVRAPFDRAWRRVGLALDRVGFTVEDRDRSQGLYYVRYVDPDDGEkpgfWSRLFGSDPELKAGDY 314

                       330       340       350       360
                ....*....|....*....|....*....|....*....|
gi 90111442 304 KLQVGDLDNRSSLQFIDPKGHTLTQSQNDALVAVFQAAFS 343
Cdd:COG3317 315 RVQVGDLGNRTSVTVLDAKGKPLTSDTADRILSLLQAQLR 354
 
Name Accession Description Interval E-value
PRK11679 PRK11679
outer membrane protein assembly factor BamC;
1-344 0e+00

outer membrane protein assembly factor BamC;


Pssm-ID: 236955  Cd Length: 346  Bit Score: 652.41  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111442    1 MAYSVQKSRLAKVAGVSLVLLLAACSSDSRYKRQVSGDEAYLEAAPLAELHAPAGMILPVTSGDYAIPVTNGSGAVGKAL 80
Cdd:PRK11679   1 MAYSVQKSRVAKVAGVSLVMLLAACSSDQRYKRQVSGDESYLEAPPLKELHAPAGMILPLQNGDYDIPVTNGSGAVGKAL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111442   81 DIRPPAQPLALVSGARTQFTGDTASLLVENG-RGNTLWPQVVSVLQAKNYTITQRDDAGQTLTTDWVQWNRLDEDEQYRG 159
Cdd:PRK11679  81 DIRPPAQPLALLSGARTQFSGDTATLLLENSpENSKLWPQVVSVLQAKNYPIAKRDDASQTLTTDWVTWNRADEDVQYRG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111442  160 RYQISVKPQGYQQAVTVKLLNLEQAGKPVADAASMQRYSTEMMNVISAGLDKSATDAANAAQNRASTTMDVQSAADDTGL 239
Cdd:PRK11679 161 RYQISVKPQGYQQALTVKLLDLEQGGKPVTDPANIQRYNTEMLNLISAGLDKQATDEANAAANRLVGQIDVQSGADDTGL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111442  240 PMLVVRGPFNVVWQRLPAALEKVGMKVTDSTRSQGNMAVTYKPLSDSDWQELGASDPGLASGDYKLQVGDLDNRSSLQFI 319
Cdd:PRK11679 241 PVLIVRAPYNVVWQRLPAALEKVGMKVTDRTRSQGTVAVTYKPPSDSFWQELGAKDPELASGDYKLQVGDLDNRSSLQFI 320

                        330       340
                 ....*....|....*....|....*
gi 90111442  320 DPKGHTLTQSQNDALVAVFQAAFSK 344
Cdd:PRK11679 321 DPKGHPLTQSQNDALVAVFQAAFSK 345
Lipoprotein_18 pfam06804
NlpB/DapX lipoprotein; This family consists of a number of bacterial lipoproteins often known ...
 47-335 8.40e-138

NlpB/DapX lipoprotein; This family consists of a number of bacterial lipoproteins often known as NlpB or DapX. This lipoprotein is detected in outer membrane vesicles in Escherichia coli and appears to be nonessential.


Pssm-ID: 429129  Cd Length: 297  Bit Score: 393.21  E-value: 8.40e-138
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111442    47 LAELHAPAGMILPVTSGDYAIPVTNGSGAVGKALDIRPPAQPLALVSGARTQFTGDTASLLVENGRGNtLWPQVVSVLQA 126
Cdd:pfam06804   1 LAPLKVPAGLILPEQNGEYDIPAVANQGAVGKQLDIRPPLQVLPLIEGSRVEESGDSATLLFENSKDE-LWQQVNDFLAE 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111442   127 KNYTITQRDDAGQTLTTDWVQ-----WNRLDEDEQYRGRYQ--ISVKPQGYQQAVTVKLLNLEQAG--KPVADAASMQRY 197
Cdd:pfam06804  80 NNIPIAKRDDASGTLETDWITnqeslWNRSDEDVQLRQRYRftISVKPHGRQAALSVSLLDLEEGDdvKEVTSPADKQRY 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111442   198 STEMMNVISAGLDKSATDAANAAQNRASTTMDVQSAADDTGLPMLVVRGPFNVVWQRLPAALEKVGMKVTDSTRSQGNMA 277
Cdd:pfam06804 160 EADMLNNVIAYLDQERRQAEAALANRQSGGIDVQLGADDNGLPVLIVRAPYNVVWDRLPLVLPKLGFTVEDRDRSQGTYF 239

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 90111442   278 VTYKPLSDSDWQELGASDPGLASGDYKLQVGDLDNRSSLQFIDPKGHTLTQSQNDALV 335
Cdd:pfam06804 240 VKYKAPSSGFWSSLGGDELDLDEGEYRLQLGDLGNRTSITFLDAKGKPLTQEQNDALV 297
BamC COG3317
Outer membrane beta-barrel protein assembly factor BamC [Cell wall/membrane/envelope ...
 7-343 1.39e-119

Outer membrane beta-barrel protein assembly factor BamC [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442546  Cd Length: 354  Bit Score: 348.88  E-value: 1.39e-119
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111442   7 KSRLAKVAGVSLVLLLAACSSDSRYKRqvSGDEAYLEAAPLAELHAPAGMILPVTSGDYAIPvtNGSGAVGKALDIRPPA 86
Cdd:COG3317   1 KLSVRLVLLLLLVLLLAGCSSLQRYFR--SGKVDYLSAPKLPPLEVPPDLTAPSQDDRYDIP--AGGAATGSEYDIRPPA 76

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111442  87 QPLALVSGARTQFTGDTASLLVENgRGNTLWPQVVSVLQAKNYTITQRDDAGQTLTTDWVQWNRLDED------------ 154
Cdd:COG3317  77 QVLPLVDGVRIERSGDQRWLVVDA-SPEQLWPQLREFWQENGFTIASEDPAAGVMETDWAENRAKIPDfirrtlldglys 155

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111442 155 EQYRGRYQISVKPQ-GYQQAVTVKLLNLEQAG------KPVADAASmQRYSTEMMNVISAGLDKSATDAANAAQNRASTT 227
Cdd:COG3317 156 TGERDRFRTRVERGvGGTTEIYVSHRGMEEVGdqkdstVWQPRPAD-PRLEAEMLNRLMVYLGADEEQAAAALAAAQVGG 234

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111442 228 MDVQSAADDTGLPMLVVRGPFNVVWQRLPAALEKVGMKVTDSTRSQGNMAVTYKPLSDSD----WQELGASDPGLASGDY 303
Cdd:COG3317 235 IRVQLGKDADGLPVLIVRAPFDRAWRRVGLALDRVGFTVEDRDRSQGLYYVRYVDPDDGEkpgfWSRLFGSDPELKAGDY 314

                       330       340       350       360
                ....*....|....*....|....*....|....*....|
gi 90111442 304 KLQVGDLDNRSSLQFIDPKGHTLTQSQNDALVAVFQAAFS 343
Cdd:COG3317 315 RVQVGDLGNRTSVTVLDAKGKPLTSDTADRILSLLQAQLR 354
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH