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Conserved domains on  [gi|16131103|ref|NP_417680|]
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glutamate synthase subunit GltD [Escherichia coli str. K-12 substr. MG1655]

Protein Classification

glutamate synthase small subunit( domain architecture ID 11492237)

glutamate synthase small subunit (subunit beta, GltD) is part of the enzyme complex that catalyzes the conversion of L-glutamine and 2-oxoglutarate into two molecules of L-glutamate

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
gltD_gamma_fam TIGR01318
glutamate synthase small subunit family protein, proteobacterial; This model represents one of ...
6-472 0e+00

glutamate synthase small subunit family protein, proteobacterial; This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.


:

Pssm-ID: 273553 [Multi-domain]  Cd Length: 467  Bit Score: 948.47  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103     6 YQFIDLQRVDPPKKPLKIRKIEFVEIYEPFSEGQAKAQADRCLSCGNPYCEWKCPVHNYIPNWLKLANEGRIFEAAELSH 85
Cdd:TIGR01318   1 FQFIDLPRQDPDKIPVEERKTDFREIYGPFDKGQAQYQADRCLDCGNPYCEWKCPVHNAIPQWLQLVQEGRIDEAAELSH 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103    86 QTNTLPEVCGRVCPQDRLCEGSCTLNDEFGAVTIGNIERYINDKAFEMGWRPDMSGVKQTGKKVAIIGAGPAGLACADVL 165
Cdd:TIGR01318  81 QTNTLPEICGRVCPQDRLCEGACTLNDEGGAVTIGNLERYITDTALAMGWRPDLSHVQPTGKRVAVIGAGPAGLACADIL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103   166 TRNGVKAVVFDRHPEIGGLLTFGIPAFKLEKEVMTRRREIFTGMGIEFKLNTEVGRDVQLDDLLSDYDAVFLGVGTYQSM 245
Cdd:TIGR01318 161 ARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFRLNCEVGRDISLDDLLEDYDAVFLGVGTYRSM 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103   246 RGGLENEDADGVYAALPFLIANTKQLMGFGETRDEPFVSMEGKRVVVLGGGDTAMDCVRTSVRQGAKHVTCAYRRDEENM 325
Cdd:TIGR01318 241 RGGLPGEDAPGVLPALPFLIANTRQLMGLPEEPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGATKVTCAYRRDEANM 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103   326 PGSRREVKNAREEGVEFKFNVQPLGIEVNGNGKVSGVKMVRTEMGEPDAKGRRRAEIVAGSEHIVPADAVIMAFGFRPHN 405
Cdd:TIGR01318 321 PGSRREVANAREEGVEFLFNVQPVSIESDEDGQVIGVTVVRTKLGEPDANGRRRPVPVAGSEFVLPADVVIMAFGFSPHL 400
                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 16131103   406 MEWLAKHSVELDSQGRIIAPEGSDNAFQTSNPKIFAGGDIVRGSDLVVTAIAEGRKAADGIMNWLEV 472
Cdd:TIGR01318 401 MPWLAAHGITLDSWGRIITALSSGLTYQTTNPKIFAGGDAVRGADLVVTAVAEGRDAAQGILDWLGV 467
 
Name Accession Description Interval E-value
gltD_gamma_fam TIGR01318
glutamate synthase small subunit family protein, proteobacterial; This model represents one of ...
6-472 0e+00

glutamate synthase small subunit family protein, proteobacterial; This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.


Pssm-ID: 273553 [Multi-domain]  Cd Length: 467  Bit Score: 948.47  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103     6 YQFIDLQRVDPPKKPLKIRKIEFVEIYEPFSEGQAKAQADRCLSCGNPYCEWKCPVHNYIPNWLKLANEGRIFEAAELSH 85
Cdd:TIGR01318   1 FQFIDLPRQDPDKIPVEERKTDFREIYGPFDKGQAQYQADRCLDCGNPYCEWKCPVHNAIPQWLQLVQEGRIDEAAELSH 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103    86 QTNTLPEVCGRVCPQDRLCEGSCTLNDEFGAVTIGNIERYINDKAFEMGWRPDMSGVKQTGKKVAIIGAGPAGLACADVL 165
Cdd:TIGR01318  81 QTNTLPEICGRVCPQDRLCEGACTLNDEGGAVTIGNLERYITDTALAMGWRPDLSHVQPTGKRVAVIGAGPAGLACADIL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103   166 TRNGVKAVVFDRHPEIGGLLTFGIPAFKLEKEVMTRRREIFTGMGIEFKLNTEVGRDVQLDDLLSDYDAVFLGVGTYQSM 245
Cdd:TIGR01318 161 ARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFRLNCEVGRDISLDDLLEDYDAVFLGVGTYRSM 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103   246 RGGLENEDADGVYAALPFLIANTKQLMGFGETRDEPFVSMEGKRVVVLGGGDTAMDCVRTSVRQGAKHVTCAYRRDEENM 325
Cdd:TIGR01318 241 RGGLPGEDAPGVLPALPFLIANTRQLMGLPEEPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGATKVTCAYRRDEANM 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103   326 PGSRREVKNAREEGVEFKFNVQPLGIEVNGNGKVSGVKMVRTEMGEPDAKGRRRAEIVAGSEHIVPADAVIMAFGFRPHN 405
Cdd:TIGR01318 321 PGSRREVANAREEGVEFLFNVQPVSIESDEDGQVIGVTVVRTKLGEPDANGRRRPVPVAGSEFVLPADVVIMAFGFSPHL 400
                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 16131103   406 MEWLAKHSVELDSQGRIIAPEGSDNAFQTSNPKIFAGGDIVRGSDLVVTAIAEGRKAADGIMNWLEV 472
Cdd:TIGR01318 401 MPWLAAHGITLDSWGRIITALSSGLTYQTTNPKIFAGGDAVRGADLVVTAVAEGRDAAQGILDWLGV 467
PRK12769 PRK12769
putative oxidoreductase Fe-S binding subunit; Reviewed
13-472 0e+00

putative oxidoreductase Fe-S binding subunit; Reviewed


Pssm-ID: 183733 [Multi-domain]  Cd Length: 654  Bit Score: 850.19  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103   13 RVDPPKKPLKIRKIEFVEIYEPFSEGQAKAQADRCLSCGN-PYCEWKCPVHNYIPNWLKLANEGRIFEAAELSHQTNTLP 91
Cdd:PRK12769 193 RGEPDKLAIEARKTGFDEIYLPFRADQAQREASRCLKCGEhSICEWTCPLHNHIPQWIELVKAGNIDAAVELSHQTNSLP 272
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103   92 EVCGRVCPQDRLCEGSCTLNDEFGAVTIGNIERYINDKAFEMGWRPDMSGVKQTGKKVAIIGAGPAGLACADVLTRNGVK 171
Cdd:PRK12769 273 EITGRVCPQDRLCEGACTLRDEYGAVTIGNIERYISDQALAKGWRPDLSQVTKSDKRVAIIGAGPAGLACADVLARNGVA 352
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  172 AVVFDRHPEIGGLLTFGIPAFKLEKEVMTRRREIFTGMGIEFKLNTEVGRDVQLDDLLSDYDAVFLGVGTYQSMRGGLEN 251
Cdd:PRK12769 353 VTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKDISLESLLEDYDAVFVGVGTYRSMKAGLPN 432
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  252 EDADGVYAALPFLIANTKQLMGFGETRDEPFVSMEGKRVVVLGGGDTAMDCVRTSVRQGAKHVTCAYRRDEENMPGSRRE 331
Cdd:PRK12769 433 EDAPGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPGSKKE 512
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  332 VKNAREEGVEFKFNVQPLGIEVNGNGKVSGVKMVRTEMGEPDAKGRRRAEIVAGSEHIVPADAVIMAFGFRPHNMEWLAK 411
Cdd:PRK12769 513 VKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPWLES 592
                        410       420       430       440       450       460
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 16131103  412 HSVELDSQGRIIAPEGSDNAFQTSNPKIFAGGDIVRGSDLVVTAIAEGRKAADGIMNWLEV 472
Cdd:PRK12769 593 HGVTVDKWGRIIADVESQYRYQTSNPKIFAGGDAVRGADLVVTAMAEGRHAAQGIIDWLGV 653
GltD COG0493
NADPH-dependent glutamate synthase beta chain or related oxidoreductase [Amino acid transport ...
24-466 0e+00

NADPH-dependent glutamate synthase beta chain or related oxidoreductase [Amino acid transport and metabolism, General function prediction only]; NADPH-dependent glutamate synthase beta chain or related oxidoreductase is part of the Pathway/BioSystem: Glutamine biosynthesis


Pssm-ID: 440259 [Multi-domain]  Cd Length: 434  Bit Score: 665.30  E-value: 0e+00
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  24 RKIEFVEIYEPFSEGQAKAQADRCLSCGNPYCEWKCPVHNYIPNWLKLANEGRIFEAAELSHQTNTLPEVCGRVCPqdRL 103
Cdd:COG0493   1 RIKDFREVYPGLSEEEAIEQAARCLDCGDPPCQTGCPVGNDIPEWIRLIAEGDYEEALELIHETNPFPEVCGRVCP--AP 78
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103 104 CEGSCTLNDEFGAVTIGNIERYINDKAFEMGWRPDMSGVKQTGKKVAIIGAGPAGLACADVLTRNGVKAVVFDRHPEIGG 183
Cdd:COG0493  79 CEGACVRGIVDEPVAIGALERFIADKAFEEGWVKPPPPAPRTGKKVAVVGSGPAGLAAAYQLARAGHEVTVFEALDKPGG 158
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103 184 LLTFGIPAFKLEKEVMTRRREIFTGMGIEFKLNTEVGRDVQLDDLLSDYDAVFLGVGTYQSMRGGLENEDADGVYAALPF 263
Cdd:COG0493 159 LLRYGIPEFRLPKDVLDREIELIEALGVEFRTNVEVGKDITLDELLEEFDAVFLATGAGKPRDLGIPGEDLKGVHSAMDF 238
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103 264 LIANTKQlmgfgetRDEPFVSMEGKRVVVLGGGDTAMDCVRTSVRQGAKHVTCAYRRDEENMPGSRREVKNAREEGVEFK 343
Cdd:COG0493 239 LTAVNLG-------EAPDTILAVGKRVVVIGGGNTAMDCARTALRLGAESVTIVYRRTREEMPASKEEVEEALEEGVEFL 311
                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103 344 FNVQPLGIEVNGNGKVSGVKMVRTEMGEPDAKGRRRAEIVAGSEHIVPADAVIMAFGFRPHNMEWLAKHSVELDSQGRII 423
Cdd:COG0493 312 FLVAPVEIIGDENGRVTGLECVRMELGEPDESGRRRPVPIEGSEFTLPADLVILAIGQTPDPSGLEEELGLELDKRGTIV 391
                       410       420       430       440
                ....*....|....*....|....*....|....*....|...
gi 16131103 424 APEGSdnaFQTSNPKIFAGGDIVRGSDLVVTAIAEGRKAADGI 466
Cdd:COG0493 392 VDEET---YQTSLPGVFAGGDAVRGPSLVVWAIAEGRKAARAI 431
Fer4_20 pfam14691
Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster; Domain II of the enzyme ...
24-135 4.26e-60

Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster; Domain II of the enzyme dihydroprymidine dehydrogenase binds FAD. Dihydroprymidine dehydrogenase catalyzes the first and rate-limiting step of pyrimidine degradation by converting pyrimidines to the corresponding 5,6- dihydro compounds. This domain carries two Fe4-S4 clusters.


Pssm-ID: 434132 [Multi-domain]  Cd Length: 113  Bit Score: 192.37  E-value: 4.26e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103    24 RKIEFVEIYEPFSEGQAKAQADRCLSCGNPYCEWKCPVHNYIPNWLKLANEGRIFEAAELSHQTNTLPEVCGRVCPQDRL 103
Cdd:pfam14691   1 RIKNFEEVALGYTEEEAIAEASRCLQCKDPPCVKGCPVHIDIPEFIKLIAEGNFEGAARIILETNPLPAICGRVCPQERQ 80
                          90       100       110
                  ....*....|....*....|....*....|...
gi 16131103   104 CEGSCTLN-DEFGAVTIGNIERYINDKAFEMGW 135
Cdd:pfam14691  81 CEGACVLGkKGFEPVAIGRLERFAADWARENGI 113
PTDH cd12157
Thermostable Phosphite Dehydrogenase; Phosphite dehydrogenase (PTDH), a member of the ...
123-179 2.25e-04

Thermostable Phosphite Dehydrogenase; Phosphite dehydrogenase (PTDH), a member of the D-specific 2-hydroxyacid dehydrogenase family, catalyzes the NAD-dependent formation of phosphate from phosphite (hydrogen phosphonate). PTDH has been suggested as a potential enzyme for cofactor regeneration systems. The D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD-binding domain.


Pssm-ID: 240634 [Multi-domain]  Cd Length: 318  Bit Score: 43.04  E-value: 2.25e-04
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 16131103 123 ERYINDKAFEmGWRPDMSGVKQTGKKVAIIGAGPAGLACADVLTRNGVKAVVFDRHP 179
Cdd:cd12157 122 DRFVRSGKFG-GWRPKFYGTGLDGKTVGILGMGALGRAIARRLSGFGATLLYYDPHP 177
Malic_M smart00919
Malic enzyme, NAD binding domain; Malic enzymes (malate oxidoreductases) catalyse the ...
139-241 9.94e-04

Malic enzyme, NAD binding domain; Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate.


Pssm-ID: 214912  Cd Length: 231  Bit Score: 40.48  E-value: 9.94e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103    139 MSGVKQTGK-----KVAIIGAGPAGLACADVLTRNGVKA---VVFDRHpeigGLLTFGipafklEKEVMTRRREiftgmg 210
Cdd:smart00919  13 LNALKITGKkledqRIVVNGAGAAGIGIAKLLVAAGVKRkniWLVDSK----GLLTKG------REDNLNPYKK------ 76
                           90       100       110
                   ....*....|....*....|....*....|.
gi 16131103    211 iEFKLNTEVGRDVQLDDLLSDYDaVFLGVGT 241
Cdd:smart00919  77 -PFARKTNERETGTLEEAVKGAD-VLIGVSG 105
 
Name Accession Description Interval E-value
gltD_gamma_fam TIGR01318
glutamate synthase small subunit family protein, proteobacterial; This model represents one of ...
6-472 0e+00

glutamate synthase small subunit family protein, proteobacterial; This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.


Pssm-ID: 273553 [Multi-domain]  Cd Length: 467  Bit Score: 948.47  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103     6 YQFIDLQRVDPPKKPLKIRKIEFVEIYEPFSEGQAKAQADRCLSCGNPYCEWKCPVHNYIPNWLKLANEGRIFEAAELSH 85
Cdd:TIGR01318   1 FQFIDLPRQDPDKIPVEERKTDFREIYGPFDKGQAQYQADRCLDCGNPYCEWKCPVHNAIPQWLQLVQEGRIDEAAELSH 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103    86 QTNTLPEVCGRVCPQDRLCEGSCTLNDEFGAVTIGNIERYINDKAFEMGWRPDMSGVKQTGKKVAIIGAGPAGLACADVL 165
Cdd:TIGR01318  81 QTNTLPEICGRVCPQDRLCEGACTLNDEGGAVTIGNLERYITDTALAMGWRPDLSHVQPTGKRVAVIGAGPAGLACADIL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103   166 TRNGVKAVVFDRHPEIGGLLTFGIPAFKLEKEVMTRRREIFTGMGIEFKLNTEVGRDVQLDDLLSDYDAVFLGVGTYQSM 245
Cdd:TIGR01318 161 ARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFRLNCEVGRDISLDDLLEDYDAVFLGVGTYRSM 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103   246 RGGLENEDADGVYAALPFLIANTKQLMGFGETRDEPFVSMEGKRVVVLGGGDTAMDCVRTSVRQGAKHVTCAYRRDEENM 325
Cdd:TIGR01318 241 RGGLPGEDAPGVLPALPFLIANTRQLMGLPEEPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGATKVTCAYRRDEANM 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103   326 PGSRREVKNAREEGVEFKFNVQPLGIEVNGNGKVSGVKMVRTEMGEPDAKGRRRAEIVAGSEHIVPADAVIMAFGFRPHN 405
Cdd:TIGR01318 321 PGSRREVANAREEGVEFLFNVQPVSIESDEDGQVIGVTVVRTKLGEPDANGRRRPVPVAGSEFVLPADVVIMAFGFSPHL 400
                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 16131103   406 MEWLAKHSVELDSQGRIIAPEGSDNAFQTSNPKIFAGGDIVRGSDLVVTAIAEGRKAADGIMNWLEV 472
Cdd:TIGR01318 401 MPWLAAHGITLDSWGRIITALSSGLTYQTTNPKIFAGGDAVRGADLVVTAVAEGRDAAQGILDWLGV 467
PRK12769 PRK12769
putative oxidoreductase Fe-S binding subunit; Reviewed
13-472 0e+00

putative oxidoreductase Fe-S binding subunit; Reviewed


Pssm-ID: 183733 [Multi-domain]  Cd Length: 654  Bit Score: 850.19  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103   13 RVDPPKKPLKIRKIEFVEIYEPFSEGQAKAQADRCLSCGN-PYCEWKCPVHNYIPNWLKLANEGRIFEAAELSHQTNTLP 91
Cdd:PRK12769 193 RGEPDKLAIEARKTGFDEIYLPFRADQAQREASRCLKCGEhSICEWTCPLHNHIPQWIELVKAGNIDAAVELSHQTNSLP 272
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103   92 EVCGRVCPQDRLCEGSCTLNDEFGAVTIGNIERYINDKAFEMGWRPDMSGVKQTGKKVAIIGAGPAGLACADVLTRNGVK 171
Cdd:PRK12769 273 EITGRVCPQDRLCEGACTLRDEYGAVTIGNIERYISDQALAKGWRPDLSQVTKSDKRVAIIGAGPAGLACADVLARNGVA 352
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  172 AVVFDRHPEIGGLLTFGIPAFKLEKEVMTRRREIFTGMGIEFKLNTEVGRDVQLDDLLSDYDAVFLGVGTYQSMRGGLEN 251
Cdd:PRK12769 353 VTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKDISLESLLEDYDAVFVGVGTYRSMKAGLPN 432
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  252 EDADGVYAALPFLIANTKQLMGFGETRDEPFVSMEGKRVVVLGGGDTAMDCVRTSVRQGAKHVTCAYRRDEENMPGSRRE 331
Cdd:PRK12769 433 EDAPGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPGSKKE 512
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  332 VKNAREEGVEFKFNVQPLGIEVNGNGKVSGVKMVRTEMGEPDAKGRRRAEIVAGSEHIVPADAVIMAFGFRPHNMEWLAK 411
Cdd:PRK12769 513 VKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPWLES 592
                        410       420       430       440       450       460
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 16131103  412 HSVELDSQGRIIAPEGSDNAFQTSNPKIFAGGDIVRGSDLVVTAIAEGRKAADGIMNWLEV 472
Cdd:PRK12769 593 HGVTVDKWGRIIADVESQYRYQTSNPKIFAGGDAVRGADLVVTAMAEGRHAAQGIIDWLGV 653
gltD PRK12810
glutamate synthase subunit beta; Reviewed
2-472 0e+00

glutamate synthase subunit beta; Reviewed


Pssm-ID: 237213 [Multi-domain]  Cd Length: 471  Bit Score: 804.38  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103    2 SQNVYQFIDLQRVDPPKKPLKIRKIEFVEIYEPFSEGQAKAQADRCLSCGNPYCEWKCPVHNYIPNWLKLANEGRIFEAA 81
Cdd:PRK12810   1 MGKPTGFLEYDRVDPKKRPVAERIKDFKEFYEPFSEEQAKIQAARCMDCGIPFCHWGCPVHNYIPEWNDLVYRGRWEEAA 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103   82 ELSHQTNTLPEVCGRVCPQDrlCEGSCTLNDEFGAVTIGNIERYINDKAFEMGW-RPDmSGVKQTGKKVAIIGAGPAGLA 160
Cdd:PRK12810  81 ERLHQTNNFPEFTGRVCPAP--CEGACTLNINFGPVTIKNIERYIIDKAFEEGWvKPD-PPVKRTGKKVAVVGSGPAGLA 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  161 CADVLTRNGVKAVVFDRHPEIGGLLTFGIPAFKLEKEVMTRRREIFTGMGIEFKLNTEVGRDVQLDDLLSDYDAVFLGVG 240
Cdd:PRK12810 158 AADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVGKDITAEELLAEYDAVFLGTG 237
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  241 TYQSMRGGLENEDADGVYAALPFLIANTKQLMGFGetrDEPFVSMEGKRVVVLGGGDTAMDCVRTSVRQGAKHVTcayRR 320
Cdd:PRK12810 238 AYKPRDLGIPGRDLDGVHFAMDFLIQNTRRVLGDE---TEPFISAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVT---QR 311
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  321 DEENMPGSRR-------------EVKNAREEGVEFKFNVQPLGIeVNGNGKVSGVKMVRTEMGEPDakgrrrAEIVAGSE 387
Cdd:PRK12810 312 DIMPMPPSRRnknnpwpywpmklEVSNAHEEGVEREFNVQTKEF-EGENGKVTGVKVVRTELGEGD------FEPVEGSE 384
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  388 HIVPADAVIMAFGFRPHNMEWLAKHSVELDSQGRIIAPegsDNAFQTSNPKIFAGGDIVRGSDLVVTAIAEGRKAADGIM 467
Cdd:PRK12810 385 FVLPADLVLLAMGFTGPEAGLLAQFGVELDERGRVAAP---DNAYQTSNPKVFAAGDMRRGQSLVVWAIAEGRQAARAID 461

                 ....*
gi 16131103  468 NWLEV 472
Cdd:PRK12810 462 AYLMG 466
GltD COG0493
NADPH-dependent glutamate synthase beta chain or related oxidoreductase [Amino acid transport ...
24-466 0e+00

NADPH-dependent glutamate synthase beta chain or related oxidoreductase [Amino acid transport and metabolism, General function prediction only]; NADPH-dependent glutamate synthase beta chain or related oxidoreductase is part of the Pathway/BioSystem: Glutamine biosynthesis


Pssm-ID: 440259 [Multi-domain]  Cd Length: 434  Bit Score: 665.30  E-value: 0e+00
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  24 RKIEFVEIYEPFSEGQAKAQADRCLSCGNPYCEWKCPVHNYIPNWLKLANEGRIFEAAELSHQTNTLPEVCGRVCPqdRL 103
Cdd:COG0493   1 RIKDFREVYPGLSEEEAIEQAARCLDCGDPPCQTGCPVGNDIPEWIRLIAEGDYEEALELIHETNPFPEVCGRVCP--AP 78
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103 104 CEGSCTLNDEFGAVTIGNIERYINDKAFEMGWRPDMSGVKQTGKKVAIIGAGPAGLACADVLTRNGVKAVVFDRHPEIGG 183
Cdd:COG0493  79 CEGACVRGIVDEPVAIGALERFIADKAFEEGWVKPPPPAPRTGKKVAVVGSGPAGLAAAYQLARAGHEVTVFEALDKPGG 158
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103 184 LLTFGIPAFKLEKEVMTRRREIFTGMGIEFKLNTEVGRDVQLDDLLSDYDAVFLGVGTYQSMRGGLENEDADGVYAALPF 263
Cdd:COG0493 159 LLRYGIPEFRLPKDVLDREIELIEALGVEFRTNVEVGKDITLDELLEEFDAVFLATGAGKPRDLGIPGEDLKGVHSAMDF 238
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103 264 LIANTKQlmgfgetRDEPFVSMEGKRVVVLGGGDTAMDCVRTSVRQGAKHVTCAYRRDEENMPGSRREVKNAREEGVEFK 343
Cdd:COG0493 239 LTAVNLG-------EAPDTILAVGKRVVVIGGGNTAMDCARTALRLGAESVTIVYRRTREEMPASKEEVEEALEEGVEFL 311
                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103 344 FNVQPLGIEVNGNGKVSGVKMVRTEMGEPDAKGRRRAEIVAGSEHIVPADAVIMAFGFRPHNMEWLAKHSVELDSQGRII 423
Cdd:COG0493 312 FLVAPVEIIGDENGRVTGLECVRMELGEPDESGRRRPVPIEGSEFTLPADLVILAIGQTPDPSGLEEELGLELDKRGTIV 391
                       410       420       430       440
                ....*....|....*....|....*....|....*....|...
gi 16131103 424 APEGSdnaFQTSNPKIFAGGDIVRGSDLVVTAIAEGRKAADGI 466
Cdd:COG0493 392 VDEET---YQTSLPGVFAGGDAVRGPSLVVWAIAEGRKAARAI 431
PRK12809 PRK12809
putative oxidoreductase Fe-S binding subunit; Reviewed
10-463 0e+00

putative oxidoreductase Fe-S binding subunit; Reviewed


Pssm-ID: 183762 [Multi-domain]  Cd Length: 639  Bit Score: 636.30  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103   10 DLQRVDPPKKPLKI----RKIEFVEIYEPFSEGQAKAQADRCLSCGN-PYCEWKCPVHNYIPNWLKLANEGRIFEAAELS 84
Cdd:PRK12809 169 ALLPVNSRKGADKIsaseRKTHFGEIYCGLDPQQATYESDRCVYCAEkANCNWHCPLHNAIPDYIRLVQEGKIIEAAELC 248
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103   85 HQTNTLPEVCGRVCPQDRLCEGSCTLNDEFGAVTIGNIERYINDKAFEMGWRPDMSGVKQTGKKVAIIGAGPAGLACADV 164
Cdd:PRK12809 249 HQTSSLPEICGRVCPQDRLCEGACTLKDHSGAVSIGNLERYITDTALAMGWRPDVSKVVPRSEKVAVIGAGPAGLGCADI 328
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  165 LTRNGVKAVVFDRHPEIGGLLTFGIPAFKLEKEVMTRRREIFTGMGIEFKLNTEVGRDVQLDDLLSDYDAVFLGVGTYQS 244
Cdd:PRK12809 329 LARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDITFSDLTSEYDAVFIGVGTYGM 408
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  245 MRGGLENEDADGVYAALPFLIANTKQLMGFGETRDEPFVSMEGKRVVVLGGGDTAMDCVRTSVRQGAKHVTCAYRRDEEN 324
Cdd:PRK12809 409 MRADLPHEDAPGVIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVS 488
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  325 MPGSRREVKNAREEGVEFKFNVQPLGIEVNGNGKVSGVKMVRTEMGEPDAKGRRRAEIVAGSEHIVPADAVIMAFGFRPH 404
Cdd:PRK12809 489 MPGSRKEVVNAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAH 568
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 16131103  405 NMEWLAKHSVELDSQGRIIAPEGSDNAFQTSNPKIFAGGDIVRGSDLVVTAIAEGRKAA 463
Cdd:PRK12809 569 AMPWLQGSGIKLDKWGLIQTGDVGYLPTQTHLKKVFAGGDAVHGADLVVTAMAAGRQAA 627
PRK11749 PRK11749
dihydropyrimidine dehydrogenase subunit A; Provisional
7-471 0e+00

dihydropyrimidine dehydrogenase subunit A; Provisional


Pssm-ID: 236967 [Multi-domain]  Cd Length: 457  Bit Score: 585.61  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103    7 QFIDLQRVDPPKKPLKIRKIEFVEIYEPFSEGQAKAQADRCLSCGNPYCEWKCPVHNYIPNWLKLANEGRIFEAAELSHQ 86
Cdd:PRK11749   2 KFLTTPRIPMPRQDAEERAQNFDEVAPGYTPEEAIEEASRCLQCKDAPCVKACPVSIDIPEFIRLIAEGNLKGAAETILE 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103   87 TNTLPEVCGRVCPQDRLCEGSCTLNDEFGAVTIGNIERYINDKAFEMGWRPDMSGVKqTGKKVAIIGAGPAGLACADVLT 166
Cdd:PRK11749  82 TNPLPAVCGRVCPQERLCEGACVRGKKGEPVAIGRLERYITDWAMETGWVLFKRAPK-TGKKVAVIGAGPAGLTAAHRLA 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  167 RNGVKAVVFDRHPEIGGLLTFGIPAFKLEKEVMTRRREIFTGMGIEFKLNTEVGRDVQLDDLLSDYDAVFLGVGTYQSMR 246
Cdd:PRK11749 161 RKGYDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRTNTEVGRDITLDELRAGYDAVFIGTGAGLPRF 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  247 GGLENEDADGVYAALPFLiANTKQlmgfGETRDEPFVsmeGKRVVVLGGGDTAMDCVRTSVRQGAKHVTCAYRRDEENMP 326
Cdd:PRK11749 241 LGIPGENLGGVYSAVDFL-TRVNQ----AVADYDLPV---GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMP 312
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  327 GSRREVKNAREEGVEFKFNVQPLGIEVNGNGkVSGVKMVRTEMGEPDAKGRRRaEIVAGSEHIVPADAVIMAFGFRPHNM 406
Cdd:PRK11749 313 ASEEEVEHAKEEGVEFEWLAAPVEILGDEGR-VTGVEFVRMELGEPDASGRRR-VPIEGSEFTLPADLVIKAIGQTPNPL 390
                        410       420       430       440       450       460
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 16131103  407 EWLAKHSVELDSQGRIIApegSDNAFQTSNPKIFAGGDIVRGSDLVVTAIAEGRKAADGIMNWLE 471
Cdd:PRK11749 391 ILSTTPGLELNRWGTIIA---DDETGRTSLPGVFAGGDIVTGAATVVWAVGDGKDAAEAIHEYLE 452
PRK12831 PRK12831
putative oxidoreductase; Provisional
11-471 2.92e-132

putative oxidoreductase; Provisional


Pssm-ID: 183780 [Multi-domain]  Cd Length: 464  Bit Score: 390.15  E-value: 2.92e-132
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103   11 LQRVDPPKKPLKIRKIEFVEIYEPFSEGQAKAQADRCLSCGNPYCEWKCPVHNYIPNWLKLANEGRIFEAAELSHQTNTL 90
Cdd:PRK12831   6 KKRVPVREQDPEVRATNFEEVCLGYNEEEAVKEASRCLQCKKPKCVKGCPVSINIPGFISKLKEGDFEEAAKIIAKYNAL 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103   91 PEVCGRVCPQDRLCEGSCTLNDEFGAVTIGNIERYINDKAFEMGWRPdMSGVKQTGKKVAIIGAGPAGLACADVLTRNGV 170
Cdd:PRK12831  86 PAVCGRVCPQESQCEGKCVLGIKGEPVAIGKLERFVADWARENGIDL-SETEEKKGKKVAVIGSGPAGLTCAGDLAKMGY 164
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  171 KAVVFDRHPEIGGLLTFGIPAFKLEKE-VMTRRREIFTGMGIEFKLNTEVGRDVQLDDLLSD--YDAVFLGVGTYQSMRG 247
Cdd:PRK12831 165 DVTIFEALHEPGGVLVYGIPEFRLPKEtVVKKEIENIKKLGVKIETNVVVGKTVTIDELLEEegFDAVFIGSGAGLPKFM 244
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  248 GLENEDADGVYAALPFLIANtkQLM-GFGETRDEPFVSmeGKRVVVLGGGDTAMDCVRTSVRQGAKhVTCAYRRDEENMP 326
Cdd:PRK12831 245 GIPGENLNGVFSANEFLTRV--NLMkAYKPEYDTPIKV--GKKVAVVGGGNVAMDAARTALRLGAE-VHIVYRRSEEELP 319
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  327 GSRREVKNAREEGVEFKFNVQPLGIEVNGNGKVSGVKMVRTEMGEPDAKGRRRAEIVAGSEHIVPADAVIMAFGFRPHNM 406
Cdd:PRK12831 320 ARVEEVHHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPL 399
                        410       420       430       440       450       460
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 16131103  407 EWLAKHSVELDSQGRIIAPEgsdNAFQTSNPKIFAGGDIVRGSDLVVTAIAEGRKAADGIMNWLE 471
Cdd:PRK12831 400 ISSTTKGLKINKRGCIVADE---ETGLTSKEGVFAGGDAVTGAATVILAMGAGKKAAKAIDEYLS 461
GOGAT_sm_gam TIGR01317
glutamate synthases, NADH/NADPH, small subunit; This model represents one of three built for ...
8-463 2.08e-120

glutamate synthases, NADH/NADPH, small subunit; This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.


Pssm-ID: 162300 [Multi-domain]  Cd Length: 485  Bit Score: 360.68  E-value: 2.08e-120
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103     8 FIDLQRVDPPKKPLKIRKIEFVEIYEPFSEGQAKAQADRCLSCGNPYC--EWKCPVHNYIPNWLKLANEGRIFEAAELSH 85
Cdd:TIGR01317   5 FLEYKRRKPTERDPRTRLKDWKEFTNPFDKESAKYQAARCMDCGTPFChnDSGCPLNNLIPEFNDLVFRGRWKEALDRLH 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103    86 QTNTLPEVCGRVCPQDrlCEGSCTLNDEFGAVTIGNIERYINDKAFEMGWRPDMSGVKQTGKKVAIIGAGPAGLACADVL 165
Cdd:TIGR01317  85 ATNNFPEFTGRVCPAP--CEGACTLGISEDPVGIKSIERIIIDKGFQEGWVQPRPPSKRTGKKVAVVGSGPAGLAAADQL 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103   166 TRNGVKAVVFDRHPEIGGLLTFGIPAFKLEKEVMTRRREIFTGMGIEFKLNTEVGRDVQLDDLLSDYDAVFLGVGTYQSM 245
Cdd:TIGR01317 163 NRAGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGVDISADELKEQFDAVVLAGGATKPR 242
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103   246 RGGLENEDADGVYAALPFLIANTKQLMGfGETRDEPFVSMEGKRVVVLGGGDTAMDCVRTSVRQGAKHVT-------CAY 318
Cdd:TIGR01317 243 DLPIPGRELKGIHYAMEFLPSATKALLG-KDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHqfeimpkPPE 321
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103   319 RRDEENM----PGSRReVKNAREEGVEF------KFNVQPLGIEVNGNGKVSGVKMVRTEMgEPDAKGRRRAEIVAGSEH 388
Cdd:TIGR01317 322 ARAKDNPwpewPRVYR-VDYAHEEAAAHygrdprEYSILTKEFIGDDEGKVTALRTVRVEW-KKSQDGKWQFVEIPGSEE 399
                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 16131103   389 IVPADAVIMAFGFRPHNMEWLAKHSVELDSQGRIIAPEGSDnafQTSNPKIFAGGDIVRGSDLVVTAIAEGRKAA 463
Cdd:TIGR01317 400 VFEADLVLLAMGFVGPEQILLDDFGVKKTRRGNISAGYDDY---STSIPGVFAAGDCRRGQSLIVWAINEGRKAA 471
gltA TIGR01316
glutamate synthase (NADPH), homotetrameric; This protein is homologous to the small subunit of ...
16-470 1.83e-112

glutamate synthase (NADPH), homotetrameric; This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH. [Amino acid biosynthesis, Glutamate family]


Pssm-ID: 130383 [Multi-domain]  Cd Length: 449  Bit Score: 339.15  E-value: 1.83e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103    16 PPKKplkiRKIEFVEIYEPFSEGQAKAQADRCLSCGNPY--CEWKCPVHNYIPNWLKLANEGRIFEAAELSHQTNTLPEV 93
Cdd:TIGR01316   1 PPEE----RSKLFQEAALGYTEQLALVEAQRCLNCKDATkpCIKGCPVHVPIPEFIAKIQEGDFKGAVDIIKTTSLLPAI 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103    94 CGRVCPQDRLCEGSCTLNDEFG----AVTIGNIERYINDKAFEMGWRPDMSGVKQTGKKVAIIGAGPAGLACADVLTRNG 169
Cdd:TIGR01316  77 CGRVCPQERQCEGQCTVGKMFKdvgkPVSIGALERFVADWERQHGIETEPEKAPSTHKKVAVIGAGPAGLACASELAKAG 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103   170 VKAVVFDRHPEIGGLLTFGIPAFKLEKEVMTRRREIFTGMGIEFKLNTEVGRDVQLDDLLSDYDAVFLGVGTYQSMRGGL 249
Cdd:TIGR01316 157 HSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLVGKTATLEELFSQYDAVFIGTGAGLPKLMNI 236
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103   250 ENEDADGVYAALPFLIANTkqLMGFGETRDEPFVSMEGKRVVVLGGGDTAMDCVRTSVRQGAKhVTCAYRRDEENMPGSR 329
Cdd:TIGR01316 237 PGEELCGVYSANDFLTRAN--LMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGAE-VHCLYRRTREDMTARV 313
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103   330 REVKNAREEGVEFKFNVQPLGIEVNGNGKVSGVKMVRTEMGEPDAKGRRRAEIVAGSEHIVPADAVIMAFGFRPHNMewL 409
Cdd:TIGR01316 314 EEIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPI--M 391
                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 16131103   410 AKHS-VELDSQGRIIApegsDNAFQTSNPKIFAGGDIVRGSDLVVTAIAEGRKAADGIMNWL 470
Cdd:TIGR01316 392 AETTrLKTSERGTIVV----DEDQRTSIPGVFAGGDIILGAATVIRAMGQGKRAAKSINEYL 449
PRK12778 PRK12778
bifunctional dihydroorotate dehydrogenase B NAD binding subunit/NADPH-dependent glutamate ...
9-470 1.94e-112

bifunctional dihydroorotate dehydrogenase B NAD binding subunit/NADPH-dependent glutamate synthase;


Pssm-ID: 237200 [Multi-domain]  Cd Length: 752  Bit Score: 348.66  E-value: 1.94e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103    9 IDLQRVDPPKKPLKIRKI-EFVEIYEPFSEGQAKAQADRCLSCGNPYCEWKCPVHNYIPNWLKLANEGRIFEAAELSHQT 87
Cdd:PRK12778 292 TAIERVPMPELDPEYRAHnRFEEVNLGLTKEQAMTEAKRCLDCKNPGCVEGCPVGIDIPRFIKNIERGNFLEAAKILKET 371
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103   88 NTLPEVCGRVCPQDRLCEGSCTL---NDEfgAVTIGNIERYINDKAFEMGwRPDMSGVKQ-TGKKVAIIGAGPAGLACAD 163
Cdd:PRK12778 372 SALPAVCGRVCPQEKQCESKCIHgkmGEE--AVAIGYLERFVADYERESG-NISVPEVAEkNGKKVAVIGSGPAGLSFAG 448
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  164 VLTRNGVKAVVFDRHPEIGGLLTFGIPAFKLEKEVMTRRREIFTGMGIEFKLNTEVGRDVQLDDLLS-DYDAVFLGVGTY 242
Cdd:PRK12778 449 DLAKRGYDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFETDVIVGKTITIEELEEeGFKGIFIASGAG 528
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  243 QSMRGGLENEDADGVYAALPFLianTK-QLM-GFGETRDEPFVSmeGKRVVVLGGGDTAMDCVRTSVRQGAKHVTCAYRR 320
Cdd:PRK12778 529 LPNFMNIPGENSNGVMSSNEYL---TRvNLMdAASPDSDTPIKF--GKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRR 603
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  321 DEENMPGSRREVKNAREEGVEFKFNVQPLGIEVNGNGKVSGVKMVRTEMGEPDAKGRRRAEIVAGSEHIVPADAVIMAFG 400
Cdd:PRK12778 604 SEEEMPARLEEVKHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVG 683
                        410       420       430       440       450       460       470
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  401 FRPHNMEWLAKHSVELDSQGRIIApegsDNAFQTSNPKIFAGGDIVRGSDLVVTAIAEGRKAADGIMNWL 470
Cdd:PRK12778 684 VSPNPLVPSSIPGLELNRKGTIVV----DEEMQSSIPGIYAGGDIVRGGATVILAMGDGKRAAAAIDEYL 749
PRK12771 PRK12771
putative glutamate synthase (NADPH) small subunit; Provisional
53-470 2.31e-107

putative glutamate synthase (NADPH) small subunit; Provisional


Pssm-ID: 237198 [Multi-domain]  Cd Length: 564  Bit Score: 329.91  E-value: 2.31e-107
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103   53 PYCEWKCPVHNYIPNWLKLANEGRIFEAAELSHQTNTLPEVCGRVCPQDrlCEGSCTLNDEFGAVTIGNIERYINDKAFE 132
Cdd:PRK12771  47 PPCNAACPAGEDIRGWLALVRGGDYEYAWRRLTKDNPFPAVMGRVCYHP--CESGCNRGQVDDAVGINAVERFLGDYAIA 124
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  133 MGWRPDMSGVkQTGKKVAIIGAGPAGLACADVLTRNGVKAVVFDRHPEIGGLLTFGIPAFKLEKEVMtrRREI--FTGMG 210
Cdd:PRK12771 125 NGWKFPAPAP-DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVL--DAEIqrILDLG 201
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  211 IEFKLNTEVGRDVQLDDLLSDYDAVFLGVGTYQSMRGGLENEDADGVYAALPFLIAntkqlmgFGETRDePFVsmeGKRV 290
Cdd:PRK12771 202 VEVRLGVRVGEDITLEQLEGEFDAVFVAIGAQLGKRLPIPGEDAAGVLDAVDFLRA-------VGEGEP-PFL---GKRV 270
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  291 VVLGGGDTAMDCVRTSVRQGAKHVTCAYRRDEENMPGSRREVKNAREEGVEFKFNVQPLGIEVNGNGkVSGVKMVRTEMG 370
Cdd:PRK12771 271 VVIGGGNTAMDAARTARRLGAEEVTIVYRRTREDMPAHDEEIEEALREGVEINWLRTPVEIEGDENG-ATGLRVITVEKM 349
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  371 EPDAKGRRRAeiVAGSEHIVPADAVIMAFGfRPHNMEWLAKHSVELDSQGRIIApegsDNAFQ-TSNPKIFAGGDIVRGS 449
Cdd:PRK12771 350 ELDEDGRPSP--VTGEEETLEADLVVLAIG-QDIDSAGLESVPGVEVGRGVVQV----DPNFMmTGRPGVFAGGDMVPGP 422
                        410       420
                 ....*....|....*....|.
gi 16131103  450 DLVVTAIAEGRKAADGIMNWL 470
Cdd:PRK12771 423 RTVTTAIGHGKKAARNIDAFL 443
PRK12775 PRK12775
putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin ...
17-470 9.19e-94

putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional


Pssm-ID: 183738 [Multi-domain]  Cd Length: 1006  Bit Score: 304.94  E-value: 9.19e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103    17 PKKPLKIRKIEFVEIYEPFSEGQAKAQADRCLSCGNPYCEWKCPVHNYIPNWLKLANEgRIFEAA-ELSHQTNTLPEVCG 95
Cdd:PRK12775  303 PERDAVERARNFKEVNLGYSLEDALQEAERCIQCAKPTCIAGCPVQIDIPVFIRHVVV-RDFDGAlEVIYEASIFPSICG 381
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103    96 RVCPQDRLCEGSCTLNDEFGAVTIGNIERYINDKA-FEMGWRPDMSgvKQTGKkVAIIGAGPAGLACADVLTRNGVKAVV 174
Cdd:PRK12775  382 RVCPQETQCEAQCIIAKKHESVGIGRLERFVGDNArAKPVKPPRFS--KKLGK-VAICGSGPAGLAAAADLVKYGVDVTV 458
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103   175 FDRHPEIGGLLTFGIPAFKLEKEVMTRRREIFTGMGIEFKLNTEVGRDVQLDDLLSD--YDAVFLGVGTYQSMRGGLENE 252
Cdd:PRK12775  459 YEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIGVKIETNKVIGKTFTVPQLMNDkgFDAVFLGVGAGAPTFLGIPGE 538
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103   253 DADGVYAALPFLiaNTKQLMGfGET---RDEPfVSMeGKRVVVLGGGDTAMDCVRTSVRQGAKHVTCAYRRDEENMPGSR 329
Cdd:PRK12775  539 FAGQVYSANEFL--TRVNLMG-GDKfpfLDTP-ISL-GKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEAEAPARI 613
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103   330 REVKNAREEGVEFKFNVQPLGIEVNGNGKVSGVKMVRTEMGEPDAKGRRRAeIVAGSEHIVPADAVIMAFGFRPHNMEWL 409
Cdd:PRK12775  614 EEIRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKP-MPTGEFKDLECDTVIYALGTKANPIITQ 692
                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 16131103   410 AKHSVELDSQGRIIAPEGSDNAFQTSN-PKIFAGGDIVRGSDLVVTAIAEGRKAADGIMNWL 470
Cdd:PRK12775  693 STPGLALNKWGNIAADDGKLESTQSTNlPGVFAGGDIVTGGATVILAMGAGRRAARSIATYL 754
PRK12814 PRK12814
putative NADPH-dependent glutamate synthase small subunit; Provisional
44-470 1.38e-93

putative NADPH-dependent glutamate synthase small subunit; Provisional


Pssm-ID: 139246 [Multi-domain]  Cd Length: 652  Bit Score: 296.64  E-value: 1.38e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103   44 ADRCLSCGNPyCEWKCPVHNYIPNWLKLANEGRIFEAAELSHQTNTLPEVCGRVCPQDrlCEGSCTLN--DEfgAVTIGN 121
Cdd:PRK12814  94 EQHCGDCLGP-CELACPAGCNIPGFIAAIARGDDREAIRIIKETIPLPGILGRICPAP--CEEACRRHgvDE--PVSICA 168
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  122 IERYINDKAFEMGWR--PDMSgvKQTGKKVAIIGAGPAGLACADVLTRNGVKAVVFDRHPEIGGLLTFGIPAFKLEKEVM 199
Cdd:PRK12814 169 LKRYAADRDMESAERyiPERA--PKSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVI 246
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  200 TRRREIFTGMGIEFKLNTEVGRDVQLDDLLSDYDAVFLGVGTYQSMRGGLENEDADGVYAALPFL--IANTKQLmgfget 277
Cdd:PRK12814 247 DADIAPLRAMGAEFRFNTVFGRDITLEELQKEFDAVLLAVGAQKASKMGIPGEELPGVISGIDFLrnVALGTAL------ 320
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  278 rdEPfvsmeGKRVVVLGGGDTAMDCVRTSVRQGAKHVTCAYRRDEENMPGSRREVKNAREEGVEFKFNVQPLGIE-VNGN 356
Cdd:PRK12814 321 --HP-----GKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPANRAEIEEALAEGVSLRELAAPVSIErSEGG 393
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  357 GKVSGVKMvrtEMGEPDAKGRRRAEIVAGSEHIVPADAVIMAFGfRPHNMEWLAKHSVELDSQGRIIAPEGSdnaFQTSN 436
Cdd:PRK12814 394 LELTAIKM---QQGEPDESGRRRPVPVEGSEFTLQADTVISAIG-QQVDPPIAEAAGIGTSRNGTVKVDPET---LQTSV 466
                        410       420       430
                 ....*....|....*....|....*....|....
gi 16131103  437 PKIFAGGDIVRGSDLVVTAIAEGRKAADGIMNWL 470
Cdd:PRK12814 467 AGVFAGGDCVTGADIAINAVEQGKRAAHAIDLFL 500
PRK13984 PRK13984
putative oxidoreductase; Provisional
7-466 2.85e-82

putative oxidoreductase; Provisional


Pssm-ID: 172486 [Multi-domain]  Cd Length: 604  Bit Score: 265.86  E-value: 2.85e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103    7 QFIDLQRVDPPKKPLKIRKIEFVEIYEPFSEGQAKAQADRCLSCGnpYCEWKCPVHNYIPNWLKLANEGRIFEAAELSHQ 86
Cdd:PRK13984 147 ELLDLERVEMEEIPPEERVKSFIEIVKGYSKEQAMQEAARCVECG--ICTDTCPAHMDIPQYIKAIYKDDLEEGLRWLYK 224
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103   87 TNTLPEVCGRVCPQDrlCEGSCTLNDEFGAVTIGNIERYINDKAFEMGWRP--DMSGVKQtGKKVAIIGAGPAGLACADV 164
Cdd:PRK13984 225 TNPLSMVCGRVCTHK--CETVCSIGHRGEPIAIRWLKRYIVDNVPVEKYSEilDDEPEKK-NKKVAIVGSGPAGLSAAYF 301
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  165 LTRNGVKAVVFDRHPEIGGLLTFGIPAFKLEKEVMTRRREIFTGMGIEFKLNTEVGRDVQLDDLLSDYDAVFLGVGTYQS 244
Cdd:PRK13984 302 LATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNTRVGKDIPLEELREKHDAVFLSTGFTLG 381
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  245 MRGGLENEDADGVYAALPFLIANTKQLMGFGEtrdEPFVSmegKRVVVLGGGDTAMDCVRTSVR----QGAK---HVTCa 317
Cdd:PRK13984 382 RSTRIPGTDHPDVIQALPLLREIRDYLRGEGP---KPKIP---RSLVVIGGGNVAMDIARSMARlqkmEYGEvnvKVTS- 454
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  318 YRRDEENMPGSRREVKNAREEGVEFKFNVQPLGIEVNgNGKVSGVKMVR-TEMGepDAKGRRRAEIVAGSEHIVPADAVI 396
Cdd:PRK13984 455 LERTFEEMPADMEEIEEGLEEGVVIYPGWGPMEVVIE-NDKVKGVKFKKcVEVF--DEEGRFNPKFDESDQIIVEADMVV 531
                        410       420       430       440       450       460       470
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 16131103  397 MAFGFRPhNMEWLA---KHSVELdSQGRIIapegSDNAFQTSNPKIFAGGDIVRGSDlVVTAIAEGRKAADGI 466
Cdd:PRK13984 532 EAIGQAP-DYSYLPeelKSKLEF-VRGRIL----TNEYGQTSIPWLFAGGDIVHGPD-IIHGVADGYWAAEGI 597
PRK12770 PRK12770
putative glutamate synthase subunit beta; Provisional
145-471 1.67e-81

putative glutamate synthase subunit beta; Provisional


Pssm-ID: 237197 [Multi-domain]  Cd Length: 352  Bit Score: 256.07  E-value: 1.67e-81
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  145 TGKKVAIIGAGPAGLACADVLTRNGVKAVVFDRHPEIGGLLTFGIPAFKLEKEVMTRRREIFTGMGIEFKLNTEV----- 219
Cdd:PRK12770  17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEAGVVFHTRTKVccgep 96
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  220 ----------GRDVQLDDLLSDYDAVFLGVGTYQSMRGGLENEDADGVYAALPFLIAntKQLMGFGETRDEPFVSMEGKR 289
Cdd:PRK12770  97 lheeegdefvERIVSLEELVKKYDAVLIATGTWKSRKLGIPGEDLPGVYSALEYLFR--IRAAKLGYLPWEKVPPVEGKK 174
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  290 VVVLGGGDTAMDCVRTSVRQGAKHVTCAYRRDEENMPGSRREVKNAREEGVEFKFNVQPlgIEVNGNGKVSGVKMVRTEM 369
Cdd:PRK12770 175 VVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEAPAGKYEIERLIARGVEFLELVTP--VRIIGEGRVEGVELAKMRL 252
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  370 GEPDAKGRRRAEIVAGSEHIVPADAVIMAFGFRPHNMEWLAKHSVELDSQGRIIApegsDNAFQTSNPKIFAGGDIVRGS 449
Cdd:PRK12770 253 GEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPFAKECLGIELNRKGEIVV----DEKHMTSREGVFAAGDVVTGP 328
                        330       340
                 ....*....|....*....|..
gi 16131103  450 DLVVTAIAEGRKAADGIMNWLE 471
Cdd:PRK12770 329 SKIGKAIKSGLRAAQSIHEWLD 350
PRK12779 PRK12779
putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; ...
59-466 3.04e-60

putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional


Pssm-ID: 183740 [Multi-domain]  Cd Length: 944  Bit Score: 212.38  E-value: 3.04e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103   59 CPVHNYIPNWLKLANEGRIFEAAELSHQTNTLPEVCGRVCPQDRLCEGSCTLNDEfgAVTIGNIERY-----------IN 127
Cdd:PRK12779 214 CPVKIHIPEMLDLLGNGKHREALELIESCNPLPNVTGRVCPQELQCQGVCTHTKR--PIEIGQLEWYlpqheklvnpnAN 291
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  128 DKaFEMGWRPDMSGVKqtgKKVAIIGAGPAGLACADVLTRNGVKAVVFDRHPEIGGLLTFGIPAFKLEKEVMTRRREIFT 207
Cdd:PRK12779 292 ER-FAGRISPWAAAVK---PPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIK 367
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  208 GMGIEFKLNTEVGRDVQLDDLLSD-YDAVFLGVG----TYQSMRGglenEDADGVYAALPFLianTK-QLM-GFGETRDE 280
Cdd:PRK12779 368 LLGGRFVKNFVVGKTATLEDLKAAgFWKIFVGTGaglpTFMNVPG----EHLLGVMSANEFL---TRvNLMrGLDDDYET 440
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  281 PFVSMEGKRVVVLGGGDTAMDCVRTSVRQGAkHVTCAYRRDEENMPGSRREVKNAREEGVEFKFNVQPLgiEVNGNGK-- 358
Cdd:PRK12779 441 PLPEVKGKEVFVIGGGNTAMDAARTAKRLGG-NVTIVYRRTKSEMPARVEELHHALEEGINLAVLRAPR--EFIGDDHth 517
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  359 -VSGVKMVRTEMGEPDAKGRRRAEIVAGSEHiVPADAVIMAFGFRPHNMEWLAKHSVELDSQGRIIAPEGSDnafQTSNP 437
Cdd:PRK12779 518 fVTHALLDVNELGEPDKSGRRSPKPTGEIER-VPVDLVIMALGNTANPIMKDAEPGLKTNKWGTIEVEKGSQ---RTSIK 593
                        410       420
                 ....*....|....*....|....*....
gi 16131103  438 KIFAGGDIVRGSDLVVTAIAEGRKAADGI 466
Cdd:PRK12779 594 GVYSGGDAARGGSTAIRAAGDGQAAAKEI 622
Fer4_20 pfam14691
Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster; Domain II of the enzyme ...
24-135 4.26e-60

Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster; Domain II of the enzyme dihydroprymidine dehydrogenase binds FAD. Dihydroprymidine dehydrogenase catalyzes the first and rate-limiting step of pyrimidine degradation by converting pyrimidines to the corresponding 5,6- dihydro compounds. This domain carries two Fe4-S4 clusters.


Pssm-ID: 434132 [Multi-domain]  Cd Length: 113  Bit Score: 192.37  E-value: 4.26e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103    24 RKIEFVEIYEPFSEGQAKAQADRCLSCGNPYCEWKCPVHNYIPNWLKLANEGRIFEAAELSHQTNTLPEVCGRVCPQDRL 103
Cdd:pfam14691   1 RIKNFEEVALGYTEEEAIAEASRCLQCKDPPCVKGCPVHIDIPEFIKLIAEGNFEGAARIILETNPLPAICGRVCPQERQ 80
                          90       100       110
                  ....*....|....*....|....*....|...
gi 16131103   104 CEGSCTLN-DEFGAVTIGNIERYINDKAFEMGW 135
Cdd:pfam14691  81 CEGACVLGkKGFEPVAIGRLERFAADWARENGI 113
TrxB COG0492
Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones];
148-471 2.84e-38

Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440258 [Multi-domain]  Cd Length: 305  Bit Score: 141.41  E-value: 2.84e-38
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103 148 KVAIIGAGPAGLACADVLTRNGVKAVVFDRhPEIGGLLT--------FGIPAFKLEKEVMTRRREIFTGMGIEFKLnTEV 219
Cdd:COG0492   2 DVVIIGAGPAGLTAAIYAARAGLKTLVIEG-GEPGGQLAttkeienyPGFPEGISGPELAERLREQAERFGAEILL-EEV 79
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103 220 gRDVQLDD-----LLSDY-----DAVFLGVGTyQSMRGGLENEDA---DGVYAALpfliantkqlmgfgeTRDEPFvsME 286
Cdd:COG0492  80 -TSVDKDDgpfrvTTDDGteyeaKAVIIATGA-GPRKLGLPGEEEfegRGVSYCA---------------TCDGFF--FR 140
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103 287 GKRVVVLGGGDTAMDCVRTsVRQGAKHVTCAYRRDEenMPGSRREVKNARE-EGVEFKFNVQPlgIEVNGNGKVSGVKMV 365
Cdd:COG0492 141 GKDVVVVGGGDSALEEALY-LTKFASKVTLIHRRDE--LRASKILVERLRAnPKIEVLWNTEV--TEIEGDGRVEGVTLK 215
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103 366 RTEMGEpdakgrrraeivagsEHIVPADAVIMAFGFRPHNmEWLAKHSVELDSQGRIIApegsDNAFQTSNPKIFAGGDI 445
Cdd:COG0492 216 NVKTGE---------------EKELEVDGVFVAIGLKPNT-ELLKGLGLELDEDGYIVV----DEDMETSVPGVFAAGDV 275
                       330       340
                ....*....|....*....|....*..
gi 16131103 446 VRGS-DLVVTAIAEGRKAADGIMNWLE 471
Cdd:COG0492 276 RDYKyRQAATAAGEGAIAALSAARYLE 302
Pyr_redox_2 pfam07992
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ...
147-459 8.95e-28

Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.


Pssm-ID: 400379 [Multi-domain]  Cd Length: 301  Bit Score: 112.41  E-value: 8.95e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103   147 KKVAIIGAGPAGLACADVLTRNGVKAVVFDR---HPEIGGLLTFGIPA-------FKLEKEVMTRRREIFTGM--GIEFK 214
Cdd:pfam07992   1 YDVVVIGGGPAGLAAALTLAQLGGKVTLIEDegtCPYGGCVLSKALLGaaeapeiASLWADLYKRKEEVVKKLnnGIEVL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103   215 LNTEV------GRDVQLDDLLSD------YDAVFLGVGTyQSMRGGLENEDaDGVYAALPFLiantkqlmgfgETRDEPF 282
Cdd:pfam07992  81 LGTEVvsidpgAKKVVLEELVDGdgetitYDRLVIATGA-RPRLPPIPGVE-LNVGFLVRTL-----------DSAEALR 147
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103   283 VSMEGKRVVVLGGGDTAMDCVRTSVRQGaKHVTCAYRRDE----ENMPGSRREVKNAREEGVEFKFNVQPLGIEVNGNGk 358
Cdd:pfam07992 148 LKLLPKRVVVVGGGYIGVELAAALAKLG-KEVTLIEALDRllraFDEEISAALEKALEKNGVEVRLGTSVKEIIGDGDG- 225
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103   359 vsgvkmvrtemgepdakgrrrAEIVAGSEHIVPADAVIMAFGFRPhNMEWLAKHSVELDSQGRIIApegsDNAFQTSNPK 438
Cdd:pfam07992 226 ---------------------VEVILKDGTEIDADLVVVAIGRRP-NTELLEAAGLELDERGGIVV----DEYLRTSVPG 279
                         330       340
                  ....*....|....*....|..
gi 16131103   439 IFAGGDI-VRGSDLVVTAIAEG 459
Cdd:pfam07992 280 IYAAGDCrVGGPELAQNAVAQG 301
TRX_reduct TIGR01292
thioredoxin-disulfide reductase; This model describes thioredoxin-disulfide reductase, a ...
148-470 2.48e-24

thioredoxin-disulfide reductase; This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070). [Energy metabolism, Electron transport]


Pssm-ID: 273540 [Multi-domain]  Cd Length: 299  Bit Score: 102.71  E-value: 2.48e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103   148 KVAIIGAGPAGLACADVLTRNGVKAVVFDRHPEIGGLLTFGI----PAFK---LEKEVMTRRREIFTGMGIEFKLNtevg 220
Cdd:TIGR01292   1 DVIIIGAGPAGLTAAIYAARANLKPLLIEGMEPGGQLTTTTEvenyPGFPegiSGPELMEKMKEQAVKFGAEIIYE---- 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103   221 rDVQLDDLLSDYDAVFLGVG-TYQSM-----------RGGLENEDAdgvyaalpfliantkqLMGFG----ETRDEPFvs 284
Cdd:TIGR01292  77 -EVIKVDKSDRPFKVYTGDGkEYTAKaviiatgasarKLGIPGEDE----------------FWGRGvsycATCDGPF-- 137
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103   285 MEGKRVVVLGGGDTAMD--CVRTSVrqgAKHVTCAYRRDeenmpGSRRE---VKNARE-EGVEFKFNVQPlgIEVNGNGK 358
Cdd:TIGR01292 138 FKNKEVAVVGGGDSAIEeaLYLTRI---AKKVTLVHRRD-----KFRAEkilLDRLKKnPKIEFLWNSTV--EEIVGDNK 207
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103   359 VSGVKMVRTEMGEpdakgrrraeivagsEHIVPADAVIMAFGFRPHNMewLAKHSVELDSQGRIIAPEGSdnafQTSNPK 438
Cdd:TIGR01292 208 VEGVKIKNTVTGE---------------EEELEVDGVFIAIGHEPNTE--LLKGLLELDENGYIVTDEGM----RTSVPG 266
                         330       340       350
                  ....*....|....*....|....*....|...
gi 16131103   439 IFAGGDIV-RGSDLVVTAIAEGRKAADGIMNWL 470
Cdd:TIGR01292 267 VFAAGDVRdKGYRQAVTAAGDGCIAALSAERYL 299
Lpd COG1249
Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex ...
149-468 7.99e-17

Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase [Energy production and conversion]; Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase is part of the Pathway/BioSystem: Glycine cleavagePyruvate oxidation


Pssm-ID: 440861 [Multi-domain]  Cd Length: 456  Bit Score: 82.44  E-value: 7.99e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103 149 VAIIGAGPAGLACADVLTRNGVKAVVFDRHPeIGG------------LL-------------TFGIPAFKLE---KEVMT 200
Cdd:COG1249   6 LVVIGAGPGGYVAAIRAAQLGLKVALVEKGR-LGGtclnvgcipskaLLhaaevahearhaaEFGISAGAPSvdwAALMA 84
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103 201 RRREIFTGM--GIEFKLNtevGRDVqldDLLSDYdAVFLGVGTYQsmrggLENEDadgVYAALPFLIA-----NTKQLMG 273
Cdd:COG1249  85 RKDKVVDRLrgGVEELLK---KNGV---DVIRGR-ARFVDPHTVE-----VTGGE---TLTADHIVIAtgsrpRVPPIPG 149
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103 274 FGETR----DEpFVSME--GKRVVVLGGGDTAMDCVrtSV--RQGAKhVTCAYRR-------DEEnmpgSRREVKNA-RE 337
Cdd:COG1249 150 LDEVRvltsDE-ALELEelPKSLVVIGGGYIGLEFA--QIfaRLGSE-VTLVERGdrllpgeDPE----ISEALEKAlEK 221
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103 338 EGVEFKFNVQPLGIEVNGNGKVsgvkmVRTEMGepdakgrrraeivaGSEHIVPADAVIMAFGFRPhNMEW--LAKHSVE 415
Cdd:COG1249 222 EGIDILTGAKVTSVEKTGDGVT-----VTLEDG--------------GGEEAVEADKVLVATGRRP-NTDGlgLEAAGVE 281
                       330       340       350       360       370
                ....*....|....*....|....*....|....*....|....*....|...
gi 16131103 416 LDSQGRIIApegsDNAFQTSNPKIFAGGDIVRGSDLVVTAIAEGRKAADGIMN 468
Cdd:COG1249 282 LDERGGIKV----DEYLRTSVPGIYAIGDVTGGPQLAHVASAEGRVAAENILG 330
PLN02852 PLN02852
ferredoxin-NADP+ reductase
149-402 8.72e-16

ferredoxin-NADP+ reductase


Pssm-ID: 215457  Cd Length: 491  Bit Score: 79.36  E-value: 8.72e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  149 VAIIGAGPAGLACADVLTR--NGVKAVVFDRHPEIGGLLTFGI-PAFKLEKEVMTRRREIFTGMGIEFKLNTEVGRDVQL 225
Cdd:PLN02852  29 VCVVGSGPAGFYTADKLLKahDGARVDIIERLPTPFGLVRSGVaPDHPETKNVTNQFSRVATDDRVSFFGNVTLGRDVSL 108
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  226 DDLLSDYDAVFLGVGTYQSMRGGLENEDADGVYAALPFLIANTkqlmGFGETRDEPFVSMEGKRVVVLGGGDTAMDCVRT 305
Cdd:PLN02852 109 SELRDLYHVVVLAYGAESDRRLGIPGEDLPGVLSAREFVWWYN----GHPDCVHLPPDLKSSDTAVVLGQGNVALDCARI 184
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  306 SVR--------------------QGAKHVTCAYRR-----------------------------------DEENMPGSR- 329
Cdd:PLN02852 185 LLRptdelastdiaehalealrgSSVRKVYLVGRRgpvqaactakelrellglknvrvrikeadltlspeDEEELKASRp 264
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  330 ----RE--VKNAREEG---------VEFKFNVQPLGIEV--NGNGKVSGVKMVRTEMgEPDAKGRRRAEIVAGSEHIVPA 392
Cdd:PLN02852 265 krrvYEllSKAAAAGKcapsggqreLHFVFFRNPTRFLDsgDGNGHVAGVKLERTVL-EGAAGSGKQVAVGTGEFEDLPC 343
                        330
                 ....*....|
gi 16131103  393 DAVIMAFGFR 402
Cdd:PLN02852 344 GLVLKSIGYK 353
NirB COG1251
NAD(P)H-nitrite reductase, large subunit [Energy production and conversion];
147-467 1.38e-14

NAD(P)H-nitrite reductase, large subunit [Energy production and conversion];


Pssm-ID: 440863 [Multi-domain]  Cd Length: 402  Bit Score: 75.18  E-value: 1.38e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103 147 KKVAIIGAGPAGLACADVLTRNGVKA--VVF--DRHP---------EIGGLLTfgipafklEKEVMTRRREIFTGMGIEF 213
Cdd:COG1251   2 MRIVIIGAGMAGVRAAEELRKLDPDGeiTVIgaEPHPpynrpplskVLAGETD--------EEDLLLRPADFYEENGIDL 73
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103 214 KLNTEV------GRDVQLDDLLS-DYDAVFLGVGTYqSMRGGLENEDADGVYAalpfL--IANTKQLMGFGEtrdepfvs 284
Cdd:COG1251  74 RLGTRVtaidraARTVTLADGETlPYDKLVLATGSR-PRVPPIPGADLPGVFT----LrtLDDADALRAALA-------- 140
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103 285 mEGKRVVVLGGG----DTAMDC----VRTSVRQGAKHVtcaYRR--DEEnmpGSRREVKNAREEGVEFKFNVQPLGIEvn 354
Cdd:COG1251 141 -PGKRVVVIGGGliglEAAAALrkrgLEVTVVERAPRL---LPRqlDEE---AGALLQRLLEALGVEVRLGTGVTEIE-- 211
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103 355 GNGKVSGVKMvrtemgepdAKGRRraeivagsehiVPADAVIMAFGFRPhNMEWLAKHSVELDsqGRIIApegsDNAFQT 434
Cdd:COG1251 212 GDDRVTGVRL---------ADGEE-----------LPADLVVVAIGVRP-NTELARAAGLAVD--RGIVV----DDYLRT 264
                       330       340       350       360
                ....*....|....*....|....*....|....*....|..
gi 16131103 435 SNPKIFAGGDIV---------RGSDLVVTAIAEGRKAADGIM 467
Cdd:COG1251 265 SDPDIYAAGDCAehpgpvygrRVLELVAPAYEQARVAAANLA 306
PRK06292 PRK06292
dihydrolipoamide dehydrogenase; Validated
149-468 3.56e-12

dihydrolipoamide dehydrogenase; Validated


Pssm-ID: 235774 [Multi-domain]  Cd Length: 460  Bit Score: 68.28  E-value: 3.56e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  149 VAIIGAGPAGLACADVLTRNGVKAVVFDRHP------------------------EIGGLLTFGIPAFKLE---KEVMTR 201
Cdd:PRK06292   6 VIVIGAGPAGYVAARRAAKLGKKVALIEKGPlggtclnvgcipskaliaaaeafhEAKHAEEFGIHADGPKidfKKVMAR 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  202 RREI---FTGMGIEF--KLNTE-----VGR--D---VQLDDLLSDYDAVFLGVGTYQSMRGGLENEDADGvyaalpfLIA 266
Cdd:PRK06292  86 VRRErdrFVGGVVEGleKKPKIdkikgTARfvDpntVEVNGERIEAKNIVIATGSRVPPIPGVWLILGDR-------LLT 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  267 NTKQLmgfgETRDEPfvsmegKRVVVLGGG----DTAmdcvrtSV--RQGAKhVTCAYRRDEEnMPGSRREVKN-AR--- 336
Cdd:PRK06292 159 SDDAF----ELDKLP------KSLAVIGGGviglELG------QAlsRLGVK-VTVFERGDRI-LPLEDPEVSKqAQkil 220
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  337 EEGVEFKFNVQPLGIEVNGNGKVsgvkmvrtemgepdakgrrRAEIVAGSEHIVPADAVIMAFGFRPhNMEWL--AKHSV 414
Cdd:PRK06292 221 SKEFKIKLGAKVTSVEKSGDEKV-------------------EELEKGGKTETIEADYVLVATGRRP-NTDGLglENTGI 280
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....
gi 16131103  415 ELDSQGRIIApegsDNAFQTSNPKIFAGGDIVRGSDLVVTAIAEGRKAADGIMN 468
Cdd:PRK06292 281 ELDERGRPVV----DEHTQTSVPGIYAAGDVNGKPPLLHEAADEGRIAAENAAG 330
FadH2 COG0446
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase ...
173-467 6.77e-12

NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase [Lipid transport and metabolism];


Pssm-ID: 440215 [Multi-domain]  Cd Length: 322  Bit Score: 66.37  E-value: 6.77e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103 173 VVFDRHPEIG----GLLTFGIPAFKLEKEVMTRRREIFTGMGIEFKLNTEV------GRDVQLDD--LLSdYDAVFLGVG 240
Cdd:COG0446   9 TVIEKGPHHSyqpcGLPYYVGGGIKDPEDLLVRTPESFERKGIDVRTGTEVtaidpeAKTVTLRDgeTLS-YDKLVLATG 87
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103 241 TyQSMRGGLENEDADGVYAALPFLIA-NTKQLMGfgetrdepfvSMEGKRVVVLGGG------DTAMdcvrtsVRQGAKh 313
Cdd:COG0446  88 A-RPRPPPIPGLDLPGVFTLRTLDDAdALREALK----------EFKGKRAVVIGGGpiglelAEAL------RKRGLK- 149
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103 314 VTCAYRRDEEnMPGSRREV-----KNAREEGVEFKFNVQPLGIEvnGNGKVSgvkmVRTEMGEpdakgrrraeivagseh 388
Cdd:COG0446 150 VTLVERAPRL-LGVLDPEMaalleEELREHGVELRLGETVVAID--GDDKVA----VTLTDGE----------------- 205
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103 389 IVPADAVIMAFGFRPhNMEWLAKHSVELDSQGRIIApegsDNAFQTSNPKIFAGGDIVRGSDLVV----------TAIAE 458
Cdd:COG0446 206 EIPADLVVVAPGVRP-NTELAKDAGLALGERGWIKV----DETLQTSDPDVYAAGDCAEVPHPVTgktvyiplasAANKQ 280

                ....*....
gi 16131103 459 GRKAADGIM 467
Cdd:COG0446 281 GRVAAENIL 289
PRK09564 PRK09564
coenzyme A disulfide reductase; Reviewed
147-444 6.14e-10

coenzyme A disulfide reductase; Reviewed


Pssm-ID: 181958 [Multi-domain]  Cd Length: 444  Bit Score: 61.21  E-value: 6.14e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  147 KKVAIIGAGPAGLACADVLTRNGVKA--VVFDRHPEIG----GLLTFGIPAFKLEKEVMTRRREIFTGMGIEFKLNTEVG 220
Cdd:PRK09564   1 MKIIIIGGTAAGMSAAAKAKRLNKELeiTVYEKTDIVSfgacGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVV 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  221 -----------RDVQLDDLLSD-YDAVFLGVGTyQSMRGGLENEDADGVYaalpflianTKQLMGFGETRDEPFVSMEGK 288
Cdd:PRK09564  81 kvdaknktitvKNLKTGSIFNDtYDKLMIATGA-RPIIPPIKNINLENVY---------TLKSMEDGLALKELLKDEEIK 150
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  289 RVVVLGGGDTAMDCVRTSVRQGaKHVTcAYRRDEENMPGS-RREV-----KNAREEGVEFKFNVQPLgiEVNGNGKVSGV 362
Cdd:PRK09564 151 NIVIIGAGFIGLEAVEAAKHLG-KNVR-IIQLEDRILPDSfDKEItdvmeEELRENGVELHLNEFVK--SLIGEDKVEGV 226
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  363 kmvRTEMGEPDAkgrrraeivagsehivpaDAVIMAFGFRPhNMEWLAKHSVELDSQGRIIApegsDNAFQTSNPKIFAG 442
Cdd:PRK09564 227 ---VTDKGEYEA------------------DVVIVATGVKP-NTEFLEDTGLKTLKNGAIIV----DEYGETSIENIYAA 280

                 ..
gi 16131103  443 GD 444
Cdd:PRK09564 281 GD 282
CzcO COG2072
Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ...
149-320 9.38e-10

Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ion transport and metabolism];


Pssm-ID: 441675 [Multi-domain]  Cd Length: 414  Bit Score: 60.26  E-value: 9.38e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103 149 VAIIGAGPAGLACADVLTRNGVKAVVFDRHPEIGGL--------LTFGIPAFKL---------EKEVMTRRREIF----- 206
Cdd:COG2072   9 VVVIGAGQAGLAAAYHLRRAGIDFVVLEKADDVGGTwrdnrypgLRLDTPSHLYslpffpnwsDDPDFPTGDEILaylea 88
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103 207 ----TGMGIEFKLNTEVgRDVQLDD-------LLSD-----YDAVFLGVGTYQsmrgglenedaDGVYAALPfliantkq 270
Cdd:COG2072  89 yadkFGLRRPIRFGTEV-TSARWDEadgrwtvTTDDgetltARFVVVATGPLS-----------RPKIPDIP-------- 148
                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 16131103 271 lmgfGETR-----------DEPfVSMEGKRVVVLGGGDTAMDCVRTSVRQgAKHVTCAYRR 320
Cdd:COG2072 149 ----GLEDfageqlhsadwRNP-VDLAGKRVLVVGTGASAVQIAPELARV-AAHVTVFQRT 203
PRK07233 PRK07233
hypothetical protein; Provisional
148-196 8.18e-09

hypothetical protein; Provisional


Pssm-ID: 235977 [Multi-domain]  Cd Length: 434  Bit Score: 57.59  E-value: 8.18e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 16131103  148 KVAIIGAGPAGLACADVLTRNGVKAVVFDRHPEIGGLL-TFGIPAFKLEK 196
Cdd:PRK07233   1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAaSFEFGGLPIER 50
Ndh COG1252
NADH dehydrogenase, FAD-containing subunit [Energy production and conversion];
147-471 2.12e-08

NADH dehydrogenase, FAD-containing subunit [Energy production and conversion];


Pssm-ID: 440864 [Multi-domain]  Cd Length: 386  Bit Score: 55.91  E-value: 2.12e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103 147 KKVAIIGAGPAGLACADVLTRN---GVKAVVFDRHPE----------IGGLLTFGipafklekEVMTRRREIFTGMGIEF 213
Cdd:COG1252   2 KRIVIVGGGFAGLEAARRLRKKlggDAEVTLIDPNPYhlfqpllpevAAGTLSPD--------DIAIPLRELLRRAGVRF 73
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103 214 ------KLNTEvGRDVQLDDLLS-DYDAVFLGVGTYQSMRG--GLEnEDADGVY---AALPFLiantKQLMGFGETRDEP 281
Cdd:COG1252  74 iqgevtGIDPE-ARTVTLADGRTlSYDYLVIATGSVTNFFGipGLA-EHALPLKtleDALALR----ERLLAAFERAERR 147
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103 282 fvsmEGKRVVVLGGGDT------AMD------CVRTSVRQGAKHVTCAYRRDE--ENMPG-SRREVKNAREEgvefkfnv 346
Cdd:COG1252 148 ----RLLTIVVVGGGPTgvelagELAellrklLRYPGIDPDKVRITLVEAGPRilPGLGEkLSEAAEKELEK-------- 215
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103 347 qpLGIEVNGNGKVSGVkmvrtemgEPDAkgrrraeIVAGSEHIVPADAVIMAFGFRPHnmEWLAKHSVELDSQGRIIApe 426
Cdd:COG1252 216 --RGVEVHTGTRVTEV--------DADG-------VTLEDGEEIPADTVIWAAGVKAP--PLLADLGLPTDRRGRVLV-- 274
                       330       340       350       360       370
                ....*....|....*....|....*....|....*....|....*....|....
gi 16131103 427 gsDNAFQT-SNPKIFAGGDIVRGSD--------LVVTAIAEGRKAADGIMNWLE 471
Cdd:COG1252 275 --DPTLQVpGHPNVFAIGDCAAVPDpdgkpvpkTAQAAVQQAKVLAKNIAALLR 326
COG3380 COG3380
Predicted NAD/FAD-dependent oxidoreductase [General function prediction only];
147-183 3.61e-08

Predicted NAD/FAD-dependent oxidoreductase [General function prediction only];


Pssm-ID: 442607 [Multi-domain]  Cd Length: 331  Bit Score: 54.88  E-value: 3.61e-08
                        10        20        30
                ....*....|....*....|....*....|....*..
gi 16131103 147 KKVAIIGAGPAGLACADVLTRNGVKAVVFDRHPEIGG 183
Cdd:COG3380   4 PDIAIIGAGIAGLAAARALQDAGHEVTVFEKSRGVGG 40
PRK06370 PRK06370
FAD-containing oxidoreductase;
151-445 4.14e-08

FAD-containing oxidoreductase;


Pssm-ID: 235787 [Multi-domain]  Cd Length: 463  Bit Score: 55.21  E-value: 4.14e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  151 IIGAGPAGLACADVLTRNGVKAVVFDRHPeIGG-LLTFG-IP---------AFKLE------------------KEVMTR 201
Cdd:PRK06370  10 VIGAGQAGPPLAARAAGLGMKVALIERGL-LGGtCVNTGcVPtktliasarAAHLArraaeygvsvggpvsvdfKAVMAR 88
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  202 RREI-----------FTGM-GIEFKLNT---EVGRDVQLDDLLSDYDAVFLGVGTyqsmRgglenedadgvyAALPflia 266
Cdd:PRK06370  89 KRRIrarsrhgseqwLRGLeGVDVFRGHarfESPNTVRVGGETLRAKRIFINTGA----R------------AAIP---- 148
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  267 ntkQLMGFGETR---DEPFVSMEG--KRVVVLGGGDTAMDCVRTSVRQGAKhVTCAyRRDEENMPGSRREVKNA-----R 336
Cdd:PRK06370 149 ---PIPGLDEVGyltNETIFSLDElpEHLVIIGGGYIGLEFAQMFRRFGSE-VTVI-ERGPRLLPREDEDVAAAvreilE 223
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  337 EEGVEFKFNVQPLGIEVNGNGKVSGVKmvrtemgepdakgrrraeiVAGSEHIVPADAVIMAFGFRPhNMEW--LAKHSV 414
Cdd:PRK06370 224 REGIDVRLNAECIRVERDGDGIAVGLD-------------------CNGGAPEITGSHILVAVGRVP-NTDDlgLEAAGV 283
                        330       340       350
                 ....*....|....*....|....*....|.
gi 16131103  415 ELDSQGRIIApegsDNAFQTSNPKIFAGGDI 445
Cdd:PRK06370 284 ETDARGYIKV----DDQLRTTNPGIYAAGDC 310
PRK07208 PRK07208
hypothetical protein; Provisional
147-184 1.20e-07

hypothetical protein; Provisional


Pssm-ID: 235967 [Multi-domain]  Cd Length: 479  Bit Score: 53.74  E-value: 1.20e-07
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 16131103  147 KKVAIIGAGPAGLACADVLTRNGVKAVVFDRHPEIGGL 184
Cdd:PRK07208   5 KSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGI 42
COG1233 COG1233
Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and ...
147-183 1.33e-07

Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 440846 [Multi-domain]  Cd Length: 491  Bit Score: 53.70  E-value: 1.33e-07
                        10        20        30
                ....*....|....*....|....*....|....*..
gi 16131103 147 KKVAIIGAGPAGLACADVLTRNGVKAVVFDRHPEIGG 183
Cdd:COG1233   4 YDVVVIGAGIGGLAAAALLARAGYRVTVLEKNDTPGG 40
NAD_binding_8 pfam13450
NAD(P)-binding Rossmann-like domain;
151-183 1.43e-07

NAD(P)-binding Rossmann-like domain;


Pssm-ID: 433218 [Multi-domain]  Cd Length: 67  Bit Score: 48.30  E-value: 1.43e-07
                          10        20        30
                  ....*....|....*....|....*....|...
gi 16131103   151 IIGAGPAGLACADVLTRNGVKAVVFDRHPEIGG 183
Cdd:pfam13450   1 IVGAGLAGLVAAALLAKRGFRVLVLEKRDRLGG 33
Pyr_redox_2 pfam07992
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ...
143-257 1.57e-07

Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.


Pssm-ID: 400379 [Multi-domain]  Cd Length: 301  Bit Score: 52.71  E-value: 1.57e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103   143 KQTGKKVAIIGAGPAGLACADVLTRNGVKAVVFDRHPEIgglltfgipAFKLEKEVMTRRREIFTGMGIEFKLNTEVGRD 222
Cdd:pfam07992 149 KLLPKRVVVVGGGYIGVELAAALAKLGKEVTLIEALDRL---------LRAFDEEISAALEKALEKNGVEVRLGTSVKEI 219
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 16131103   223 VQLDDLLS---------DYDAVFLGVGtyqsMRGGLENEDADGV 257
Cdd:pfam07992 220 IGDGDGVEvilkdgteiDADLVVVAIG----RRPNTELLEAAGL 259
HemY COG1232
Protoporphyrinogen oxidase HemY/PPOX [Coenzyme transport and metabolism]; Protoporphyrinogen ...
147-185 1.92e-07

Protoporphyrinogen oxidase HemY/PPOX [Coenzyme transport and metabolism]; Protoporphyrinogen oxidase HemY/PPOX is part of the Pathway/BioSystem: Heme biosynthesis


Pssm-ID: 440845 [Multi-domain]  Cd Length: 443  Bit Score: 53.30  E-value: 1.92e-07
                        10        20        30
                ....*....|....*....|....*....|....*....
gi 16131103 147 KKVAIIGAGPAGLACADVLTRNGVKAVVFDRHPEIGGLL 185
Cdd:COG1232   2 KRVAVIGGGIAGLTAAYRLAKAGHEVTVLEASDRVGGLI 40
Pyr_redox pfam00070
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ...
148-227 2.83e-07

Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.


Pssm-ID: 425450 [Multi-domain]  Cd Length: 80  Bit Score: 47.97  E-value: 2.83e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103   148 KVAIIGAGPAGLACADVLTRNGVKAVVFDRHPEIGGlltfgipafKLEKEVMTRRREIFTGMGIEFKLNTEVGRDVQLDD 227
Cdd:pfam00070   1 RVVVVGGGYIGLELAGALARLGSKVTVVERRDRLLP---------GFDPEIAKILQEKLEKNGIEFLLNTTVEAIEGNGD 71
Pyr_redox_3 pfam13738
Pyridine nucleotide-disulphide oxidoreductase;
156-443 7.34e-07

Pyridine nucleotide-disulphide oxidoreductase;


Pssm-ID: 404603 [Multi-domain]  Cd Length: 296  Bit Score: 50.69  E-value: 7.34e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103   156 PAGLACADVLTRNGVKAVV----------FDRHPEIGGLLT-------FGI-----------PAFKLEKEVMTRR----- 202
Cdd:pfam13738   1 PAGIGCAIALKKAGLEDYLilekgnignsFYRYPTHMTFFSpsftsngFGIpdlnaispgtsPAFTFNREHPSGNeyaey 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103   203 -REIFTGMGIEFKLNTEVgRDVQLDDLL-------SDYDAVFLGVGTyqsmrgglenedadGVYAalpflIANtkqLMGF 274
Cdd:pfam13738  81 lRRVADHFELPINLFEEV-TSVKKEDDGfvvttskGTYQARYVIIAT--------------GEFD-----FPN---KLGV 137
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103   275 GETR-----DEPFVSMEGKRVVVLGGGDTAMDCVRTSVRQGAkHVTCAYRRDEENMPGS----------RREVKNAREEG 339
Cdd:pfam13738 138 PELPkhysyVKDFHPYAGQKVVVIGGYNSAVDAALELVRKGA-RVTVLYRGSEWEDRDSdpsyslspdtLNRLEELVKNG 216
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103   340 VefkfnvqplgIEVNGNGKVsgvkmvrTEMGEPDAKGRRRAEivAGSEHIVPaDAVIMAFGFRPhNMEWLAKHSVELDSQ 419
Cdd:pfam13738 217 K----------IKAHFNAEV-------KEITEVDVSYKVHTE--DGRKVTSN-DDPILATGYHP-DLSFLKKGLFELDED 275
                         330       340
                  ....*....|....*....|....
gi 16131103   420 GRiiaPEGSDNAFQTSNPKIFAGG 443
Cdd:pfam13738 276 GR---PVLTEETESTNVPGLFLAG 296
FadH2 COG0446
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase ...
143-240 9.44e-07

NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase [Lipid transport and metabolism];


Pssm-ID: 440215 [Multi-domain]  Cd Length: 322  Bit Score: 50.58  E-value: 9.44e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103 143 KQTGKKVAIIGAGPAGLACADVLTRNGVKAVVFDRHPEIGGlltfgipafKLEKEVMTRRREIFTGMGIEFKLNTEV--- 219
Cdd:COG0446 121 EFKGKRAVVIGGGPIGLELAEALRKRGLKVTLVERAPRLLG---------VLDPEMAALLEEELREHGVELRLGETVvai 191
                        90       100
                ....*....|....*....|....*...
gi 16131103 220 -GRD---VQLDD---LlsDYDAVFLGVG 240
Cdd:COG0446 192 dGDDkvaVTLTDgeeI--PADLVVVAPG 217
Pyr_redox pfam00070
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ...
289-359 1.13e-06

Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.


Pssm-ID: 425450 [Multi-domain]  Cd Length: 80  Bit Score: 46.04  E-value: 1.13e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 16131103   289 RVVVLGGGDTAMDCVRTSVRQGaKHVTCAYRRDE----ENMPGSRREVKNAREEGVEFKFNVQPLGIEVNGNGKV 359
Cdd:pfam00070   1 RVVVVGGGYIGLELAGALARLG-SKVTVVERRDRllpgFDPEIAKILQEKLEKNGIEFLLNTTVEAIEGNGDGVV 74
PTZ00188 PTZ00188
adrenodoxin reductase; Provisional
148-253 1.14e-06

adrenodoxin reductase; Provisional


Pssm-ID: 240308  Cd Length: 506  Bit Score: 51.04  E-value: 1.14e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  148 KVAIIGAGPAGLACADVLTRN-GVKAVVFDRHPEIGGLLTFGI-PAFKLEKEVMTRRREIFTGMGIEFKLNTEVGRDVQL 225
Cdd:PTZ00188  41 KVGIIGAGPSALYCCKHLLKHeRVKVDIFEKLPNPYGLIRYGVaPDHIHVKNTYKTFDPVFLSPNYRFFGNVHVGVDLKM 120
                         90       100
                 ....*....|....*....|....*....
gi 16131103  226 DDLLSDYDAVFLGVGTYQ-SMRGGLENED 253
Cdd:PTZ00188 121 EELRNHYNCVIFCCGASEvSIPIGQQDED 149
YobN COG1231
Monoamine oxidase [Amino acid transport and metabolism];
144-183 1.58e-06

Monoamine oxidase [Amino acid transport and metabolism];


Pssm-ID: 440844 [Multi-domain]  Cd Length: 440  Bit Score: 50.30  E-value: 1.58e-06
                        10        20        30        40
                ....*....|....*....|....*....|....*....|
gi 16131103 144 QTGKKVAIIGAGPAGLACADVLTRNGVKAVVFDRHPEIGG 183
Cdd:COG1231   5 ARGKDVVIVGAGLAGLAAARELRKAGLDVTVLEARDRVGG 44
PRK06116 PRK06116
glutathione reductase; Validated
288-464 1.98e-06

glutathione reductase; Validated


Pssm-ID: 235701 [Multi-domain]  Cd Length: 450  Bit Score: 50.15  E-value: 1.98e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  288 KRVVVLGGGDTAMD--CVRTSVrqGAKhVTCAYRRDE--ENMPGSRRE--VKNAREEGVEFKFNVQPLGIEVNGNGKVSg 361
Cdd:PRK06116 168 KRVAVVGAGYIAVEfaGVLNGL--GSE-THLFVRGDAplRGFDPDIREtlVEEMEKKGIRLHTNAVPKAVEKNADGSLT- 243
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  362 vkmVRTEMGEpdakgrrraeivagsehIVPADAVIMAFGFRP--HNMEwLAKHSVELDSQGRIIApegsDNAFQTSNPKI 439
Cdd:PRK06116 244 ---LTLEDGE-----------------TLTVDCLIWAIGREPntDGLG-LENAGVKLNEKGYIIV----DEYQNTNVPGI 298
                        170       180
                 ....*....|....*....|....*
gi 16131103  440 FAGGDIVRGSDLVVTAIAEGRKAAD 464
Cdd:PRK06116 299 YAVGDVTGRVELTPVAIAAGRRLSE 323
UbiH COG0654
2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme ...
148-182 3.41e-06

2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme transport and metabolism, Energy production and conversion]; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases is part of the Pathway/BioSystem: Ubiquinone biosynthesis


Pssm-ID: 440419 [Multi-domain]  Cd Length: 326  Bit Score: 48.78  E-value: 3.41e-06
                        10        20        30
                ....*....|....*....|....*....|....*
gi 16131103 148 KVAIIGAGPAGLACADVLTRNGVKAVVFDRHPEIG 182
Cdd:COG0654   5 DVLIVGGGPAGLALALALARAGIRVTVVERAPPPR 39
DAO pfam01266
FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: ...
148-213 4.01e-06

FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.


Pssm-ID: 426168 [Multi-domain]  Cd Length: 339  Bit Score: 48.55  E-value: 4.01e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103   148 KVAIIGAGPAGLACADVLTRNGVKAVVFDRHPEIG--------GLLTFGI------PAFKLEKEVMTRRREIFTGMGIEF 213
Cdd:pfam01266   1 DVVVIGGGIVGLSTAYELARRGLSVTLLERGDDPGsgasgrnaGLIHPGLrylepsELARLALEALDLWEELEEELGIDC 80
YhiN COG2081
Predicted flavoprotein YhiN [General function prediction only];
150-182 5.60e-06

Predicted flavoprotein YhiN [General function prediction only];


Pssm-ID: 441684 [Multi-domain]  Cd Length: 402  Bit Score: 48.51  E-value: 5.60e-06
                        10        20        30
                ....*....|....*....|....*....|...
gi 16131103 150 AIIGAGPAGLACADVLTRNGVKAVVFDRHPEIG 182
Cdd:COG2081   1 IVIGAGAAGLMAAITAAERGARVLLLEKNPKVG 33
PLN02172 PLN02172
flavin-containing monooxygenase FMO GS-OX
145-184 7.96e-06

flavin-containing monooxygenase FMO GS-OX


Pssm-ID: 215116 [Multi-domain]  Cd Length: 461  Bit Score: 48.32  E-value: 7.96e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 16131103  145 TGKKVAIIGAGPAGLACADVLTRNGVKAVVFDRHPEIGGL 184
Cdd:PLN02172   9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGL 48
COG2509 COG2509
FAD-dependent dehydrogenase [General function prediction only];
141-177 9.31e-06

FAD-dependent dehydrogenase [General function prediction only];


Pssm-ID: 441999 [Multi-domain]  Cd Length: 466  Bit Score: 47.80  E-value: 9.31e-06
                        10        20        30
                ....*....|....*....|....*....|....*..
gi 16131103 141 GVKQTGKKVAIIGAGPAGLACADVLTRNGVKAVVFDR 177
Cdd:COG2509  25 GIPSLKYDVVIVGAGPAGLFAALELAEAGLKPLVLER 61
COG3349 COG3349
Uncharacterized protein, contains NAD-binding domain and a Fe-S cluster [General function ...
145-183 1.38e-05

Uncharacterized protein, contains NAD-binding domain and a Fe-S cluster [General function prediction only];


Pssm-ID: 442577 [Multi-domain]  Cd Length: 445  Bit Score: 47.16  E-value: 1.38e-05
                        10        20        30
                ....*....|....*....|....*....|....*....
gi 16131103 145 TGKKVAIIGAGPAGLACADVLTRNGVKAVVFDRHPEIGG 183
Cdd:COG3349   2 MPPRVVVVGGGLAGLAAAVELAEAGFRVTLLEARPRLGG 40
PRK08243 PRK08243
4-hydroxybenzoate 3-monooxygenase; Validated
148-177 2.48e-05

4-hydroxybenzoate 3-monooxygenase; Validated


Pssm-ID: 236198 [Multi-domain]  Cd Length: 392  Bit Score: 46.33  E-value: 2.48e-05
                         10        20        30
                 ....*....|....*....|....*....|
gi 16131103  148 KVAIIGAGPAGLACADVLTRNGVKAVVFDR 177
Cdd:PRK08243   4 QVAIIGAGPAGLLLGQLLHLAGIDSVVLER 33
HI0933_like pfam03486
HI0933-like protein;
147-182 2.82e-05

HI0933-like protein;


Pssm-ID: 427330 [Multi-domain]  Cd Length: 406  Bit Score: 46.42  E-value: 2.82e-05
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 16131103   147 KKVAIIGAGPAGLACADVLTRNGVKAVVFDRHPEIG 182
Cdd:pfam03486   1 FDVIVIGGGAAGLMAAISAAKRGRRVLLIEKGKKLG 36
PRK15317 PRK15317
alkyl hydroperoxide reductase subunit F; Provisional
279-463 3.38e-05

alkyl hydroperoxide reductase subunit F; Provisional


Pssm-ID: 237942 [Multi-domain]  Cd Length: 517  Bit Score: 46.30  E-value: 3.38e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  279 DEPFvsMEGKRVVVLGGGDT----AMDCVrtsvrqG-AKHVTCAyrrdeENMPGSR---------REVKNareegVEFKF 344
Cdd:PRK15317 345 DGPL--FKGKRVAVIGGGNSgveaAIDLA------GiVKHVTVL-----EFAPELKadqvlqdklRSLPN-----VTIIT 406
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  345 NVQPlgIEVNGNG-KVSGVKMVRTEMGEpdakgrrraeivagsEHIVPADAVIMAFGFRPhNMEWLaKHSVELDSQGRII 423
Cdd:PRK15317 407 NAQT--TEVTGDGdKVTGLTYKDRTTGE---------------EHHLELEGVFVQIGLVP-NTEWL-KGTVELNRRGEII 467
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 16131103  424 ApegsDNAFQTSNPKIFAGGDIvrgSDL----VVTAIAEGRKAA 463
Cdd:PRK15317 468 V----DARGATSVPGVFAAGDC---TTVpykqIIIAMGEGAKAA 504
PRK09126 PRK09126
FAD-dependent hydroxylase;
149-180 4.61e-05

FAD-dependent hydroxylase;


Pssm-ID: 236385 [Multi-domain]  Cd Length: 392  Bit Score: 45.70  E-value: 4.61e-05
                         10        20        30
                 ....*....|....*....|....*....|..
gi 16131103  149 VAIIGAGPAGLACADVLTRNGVKAVVFDRHPE 180
Cdd:PRK09126   6 IVVVGAGPAGLSFARSLAGSGLKVTLIERQPL 37
FAD_oxidored pfam12831
FAD dependent oxidoreductase; This family of proteins contains FAD dependent oxidoreductases ...
149-188 1.04e-04

FAD dependent oxidoreductase; This family of proteins contains FAD dependent oxidoreductases and related proteins.


Pssm-ID: 432816 [Multi-domain]  Cd Length: 420  Bit Score: 44.52  E-value: 1.04e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 16131103   149 VAIIGAGPAGLACADVLTRNGVKAVVFDRHPEIGGLLTFG 188
Cdd:pfam12831   2 VVVVGGGPAGVAAAIAAARAGAKVLLVERRGFLGGMLTSG 41
MurD COG0771
UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell wall/membrane/envelope biogenesis]; ...
146-180 1.97e-04

UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell wall/membrane/envelope biogenesis]; UDP-N-acetylmuramoylalanine-D-glutamate ligase is part of the Pathway/BioSystem: Mureine biosynthesis


Pssm-ID: 440534 [Multi-domain]  Cd Length: 445  Bit Score: 43.53  E-value: 1.97e-04
                        10        20        30
                ....*....|....*....|....*....|....*
gi 16131103 146 GKKVAIIGAGPAGLACADVLTRNGVKAVVFDRHPE 180
Cdd:COG0771   4 GKKVLVLGLGKSGLAAARLLAKLGAEVTVSDDRPA 38
PRK12771 PRK12771
putative glutamate synthase (NADPH) small subunit; Provisional
3-60 2.12e-04

putative glutamate synthase (NADPH) small subunit; Provisional


Pssm-ID: 237198 [Multi-domain]  Cd Length: 564  Bit Score: 43.71  E-value: 2.12e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 16131103    3 QNVYQFIDLQRVDPPKKPLKIRKIEFVEIYEPFSEGQAKAQADRCLSCGNPY----CEWKCP 60
Cdd:PRK12771 462 LNLWYFTDAPRAQRPELDADERVGDFDEVLGGLTEEEARQEAARCLSCGNCFecdnCYGACP 523
PTDH cd12157
Thermostable Phosphite Dehydrogenase; Phosphite dehydrogenase (PTDH), a member of the ...
123-179 2.25e-04

Thermostable Phosphite Dehydrogenase; Phosphite dehydrogenase (PTDH), a member of the D-specific 2-hydroxyacid dehydrogenase family, catalyzes the NAD-dependent formation of phosphate from phosphite (hydrogen phosphonate). PTDH has been suggested as a potential enzyme for cofactor regeneration systems. The D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD-binding domain.


Pssm-ID: 240634 [Multi-domain]  Cd Length: 318  Bit Score: 43.04  E-value: 2.25e-04
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 16131103 123 ERYINDKAFEmGWRPDMSGVKQTGKKVAIIGAGPAGLACADVLTRNGVKAVVFDRHP 179
Cdd:cd12157 122 DRFVRSGKFG-GWRPKFYGTGLDGKTVGILGMGALGRAIARRLSGFGATLLYYDPHP 177
PLN02976 PLN02976
amine oxidase
146-183 3.19e-04

amine oxidase


Pssm-ID: 215527 [Multi-domain]  Cd Length: 1713  Bit Score: 43.32  E-value: 3.19e-04
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 16131103   146 GKKVAIIGAGPAGLACADVLTRNGVKAVVFDRHPEIGG 183
Cdd:PLN02976  693 RKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGG 730
FAD_binding_3 pfam01494
FAD binding domain; This domain is involved in FAD binding in a number of enzymes.
148-180 3.56e-04

FAD binding domain; This domain is involved in FAD binding in a number of enzymes.


Pssm-ID: 396193 [Multi-domain]  Cd Length: 348  Bit Score: 42.70  E-value: 3.56e-04
                          10        20        30
                  ....*....|....*....|....*....|...
gi 16131103   148 KVAIIGAGPAGLACADVLTRNGVKAVVFDRHPE 180
Cdd:pfam01494   3 DVLIVGGGPAGLMLALLLARAGVRVVLVERHAT 35
Thi4 pfam01946
Thi4 family; This family includes Swiss:P32318 a putative thiamine biosynthetic enzyme.
149-183 4.84e-04

Thi4 family; This family includes Swiss:P32318 a putative thiamine biosynthetic enzyme.


Pssm-ID: 460393  Cd Length: 232  Bit Score: 41.69  E-value: 4.84e-04
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 16131103   149 VAIIGAGPAGLACADVLTRN-GVKAVVFDRHPEIGG 183
Cdd:pfam01946  20 VVIVGAGSSGLTAAYYLAKNrGLKVAIIERSVSPGG 55
YdhS COG4529
Uncharacterized NAD(P)/FAD-binding protein YdhS [General function prediction only];
147-182 5.32e-04

Uncharacterized NAD(P)/FAD-binding protein YdhS [General function prediction only];


Pssm-ID: 443597 [Multi-domain]  Cd Length: 466  Bit Score: 42.25  E-value: 5.32e-04
                        10        20        30
                ....*....|....*....|....*....|....*....
gi 16131103 147 KKVAIIGAGPAGLACADVLTRN---GVKAVVFDRHPEIG 182
Cdd:COG4529   6 KRIAIIGGGASGTALAIHLLRRapePLRITLFEPRPELG 44
PRK06292 PRK06292
dihydrolipoamide dehydrogenase; Validated
125-219 5.47e-04

dihydrolipoamide dehydrogenase; Validated


Pssm-ID: 235774 [Multi-domain]  Cd Length: 460  Bit Score: 42.09  E-value: 5.47e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  125 YINDKAFEMGWRPdmsgvkqtgKKVAIIGAGPAGLACADVLTRNGVKAVVFDRHPEIGGLltfgipafkLEKEVMTRRRE 204
Cdd:PRK06292 157 LTSDDAFELDKLP---------KSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPL---------EDPEVSKQAQK 218
                         90
                 ....*....|....*
gi 16131103  205 IFTGMgIEFKLNTEV 219
Cdd:PRK06292 219 ILSKE-FKIKLGAKV 232
PRK06126 PRK06126
hypothetical protein; Provisional
148-180 6.26e-04

hypothetical protein; Provisional


Pssm-ID: 235704 [Multi-domain]  Cd Length: 545  Bit Score: 42.29  E-value: 6.26e-04
                         10        20        30
                 ....*....|....*....|....*....|...
gi 16131103  148 KVAIIGAGPAGLACADVLTRNGVKAVVFDRHPE 180
Cdd:PRK06126   9 PVLIVGGGPVGLALALDLGRRGVDSILVERKDG 41
PRK04965 PRK04965
NADH:flavorubredoxin reductase NorW;
285-444 7.36e-04

NADH:flavorubredoxin reductase NorW;


Pssm-ID: 179902 [Multi-domain]  Cd Length: 377  Bit Score: 41.83  E-value: 7.36e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  285 MEGKRVVVLGGG----DTAMDCVRTsvrqgAKHVT---CAYRRDEENMPG--SRREVKNAREEGVEFKFNVQPLGIEVNG 355
Cdd:PRK04965 139 RDAQRVLVVGGGligtELAMDLCRA-----GKAVTlvdNAASLLASLMPPevSSRLQHRLTEMGVHLLLKSQLQGLEKTD 213
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  356 NGKvsgvkmvrtemgepdakgrrRAEIVAGSEHIVpaDAVIMAFGFRPhNMEwLAKHSvELDSQGRIIApegsDNAFQTS 435
Cdd:PRK04965 214 SGI--------------------RATLDSGRSIEV--DAVIAAAGLRP-NTA-LARRA-GLAVNRGIVV----DSYLQTS 264

                 ....*....
gi 16131103  436 NPKIFAGGD 444
Cdd:PRK04965 265 APDIYALGD 273
PRK08132 PRK08132
FAD-dependent oxidoreductase; Provisional
136-182 7.39e-04

FAD-dependent oxidoreductase; Provisional


Pssm-ID: 236158 [Multi-domain]  Cd Length: 547  Bit Score: 41.78  E-value: 7.39e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 16131103  136 RPDMSGVKQTGKKVAIIGAGPAGLACADVLTRNGVKAVVFDRHPEIG 182
Cdd:PRK08132  13 HADQDADDPARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLS 59
trypano_reduc TIGR01423
trypanothione-disulfide reductase; Trypanothione, a glutathione-modified derivative of ...
277-466 8.22e-04

trypanothione-disulfide reductase; Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.


Pssm-ID: 200098 [Multi-domain]  Cd Length: 486  Bit Score: 41.88  E-value: 8.22e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103   277 TRDEPFVSMEG-KRVVVLGGGDTAMDC--VRTSVRQGAKHVTCAYRRD------EENMpgsRREV-KNAREEGVEFKFNV 346
Cdd:TIGR01423 176 SSNEAFYLDEPpRRVLTVGGGFISVEFagIFNAYKPRGGKVTLCYRNNmilrgfDSTL---RKELtKQLRANGINIMTNE 252
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103   347 QPLGIEVNGNGKvsgvKMVRTEMGEPdakgrrraeivagsehiVPADAVIMAFGFRPHNmewlakHSVELDSQGRIIAPE 426
Cdd:TIGR01423 253 NPAKVTLNADGS----KHVTFESGKT-----------------LDVDVVMMAIGRVPRT------QTLQLDKVGVELTKK 305
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 16131103   427 GS---DNAFQTSNPKIFAGGDIVRGSDLVVTAIAEGRKAADGI 466
Cdd:TIGR01423 306 GAiqvDEFSRTNVPNIYAIGDVTDRVMLTPVAINEGAAFVDTV 348
PRK07251 PRK07251
FAD-containing oxidoreductase;
147-253 8.53e-04

FAD-containing oxidoreductase;


Pssm-ID: 180907 [Multi-domain]  Cd Length: 438  Bit Score: 41.66  E-value: 8.53e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  147 KKVAIIGAGPAGLACADVLTRNGVKAVVFDRHPEIGGlltfgipafKLEKEVMTRRREIFTGMGIEFKLN---TEVGRD- 222
Cdd:PRK07251 158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILP---------REEPSVAALAKQYMEEDGITFLLNahtTEVKNDg 228
                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 16131103  223 ----VQLDDLLSDYDAVFLGVGTYQSMRG-GLENED 253
Cdd:PRK07251 229 dqvlVVTEDETYRFDALLYATGRKPNTEPlGLENTD 264
Malic_M smart00919
Malic enzyme, NAD binding domain; Malic enzymes (malate oxidoreductases) catalyse the ...
139-241 9.94e-04

Malic enzyme, NAD binding domain; Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate.


Pssm-ID: 214912  Cd Length: 231  Bit Score: 40.48  E-value: 9.94e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103    139 MSGVKQTGK-----KVAIIGAGPAGLACADVLTRNGVKA---VVFDRHpeigGLLTFGipafklEKEVMTRRREiftgmg 210
Cdd:smart00919  13 LNALKITGKkledqRIVVNGAGAAGIGIAKLLVAAGVKRkniWLVDSK----GLLTKG------REDNLNPYKK------ 76
                           90       100       110
                   ....*....|....*....|....*....|.
gi 16131103    211 iEFKLNTEVGRDVQLDDLLSDYDaVFLGVGT 241
Cdd:smart00919  77 -PFARKTNERETGTLEEAVKGAD-VLIGVSG 105
DadA COG0665
Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];
148-179 1.00e-03

Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];


Pssm-ID: 440429 [Multi-domain]  Cd Length: 364  Bit Score: 41.43  E-value: 1.00e-03
                        10        20        30
                ....*....|....*....|....*....|..
gi 16131103 148 KVAIIGAGPAGLACADVLTRNGVKAVVFDRHP 179
Cdd:COG0665   4 DVVVIGGGIAGLSTAYHLARRGLDVTVLERGR 35
mhpA PRK06183
bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase;
149-181 1.04e-03

bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase;


Pssm-ID: 235727 [Multi-domain]  Cd Length: 500  Bit Score: 41.43  E-value: 1.04e-03
                         10        20        30
                 ....*....|....*....|....*....|...
gi 16131103  149 VAIIGAGPAGLACADVLTRNGVKAVVFDRHPEI 181
Cdd:PRK06183  13 VVIVGAGPVGLTLANLLGQYGVRVLVLERWPTL 45
PRK05249 PRK05249
Si-specific NAD(P)(+) transhydrogenase;
151-463 1.11e-03

Si-specific NAD(P)(+) transhydrogenase;


Pssm-ID: 235373 [Multi-domain]  Cd Length: 461  Bit Score: 41.30  E-value: 1.11e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  151 IIGAGPAGLACADVLTRNGVKAVVFDRHPEIGGLLTF-G-IPAFKLEKEVM----TRRREIFTGMGiefklnteVGRDVQ 224
Cdd:PRK05249  10 VIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHtGtIPSKALREAVLrligFNQNPLYSSYR--------VKLRIT 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  225 LDDLLSDYDAVflgVGTYQSMRGG---------------------LENEDADG---VYAALPFLIA-NTK----QLMGFG 275
Cdd:PRK05249  82 FADLLARADHV---INKQVEVRRGqyernrvdliqgrarfvdphtVEVECPDGeveTLTADKIVIAtGSRpyrpPDVDFD 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  276 ETR----DEpFVSMEG--KRVVVLGGGD---------TAMDCvrtsvrqgakHVTCAYRRDeenmpgsR------REVKN 334
Cdd:PRK05249 159 HPRiydsDS-ILSLDHlpRSLIIYGAGVigceyasifAALGV----------KVTLINTRD-------RllsfldDEISD 220
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  335 A-----REEGVEFKFNVQPLGIEVNGNGKVsgvkmvrTEMgepdAKGRRraeivagsehiVPADAVIMAFGfRPHNMEWL 409
Cdd:PRK05249 221 AlsyhlRDSGVTIRHNEEVEKVEGGDDGVI-------VHL----KSGKK-----------IKADCLLYANG-RTGNTDGL 277
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 16131103  410 AKHSV--ELDSQGRIIApegsDNAFQTSNPKIFAGGDIVRGSDLVVTAIAEGRKAA 463
Cdd:PRK05249 278 NLENAglEADSRGQLKV----NENYQTAVPHIYAVGDVIGFPSLASASMDQGRIAA 329
FMO-like pfam00743
Flavin-binding monooxygenase-like; This family includes FMO proteins, cyclohexanone ...
146-187 1.15e-03

Flavin-binding monooxygenase-like; This family includes FMO proteins, cyclohexanone mono-oxygenase and a number of different mono-oxygenases.


Pssm-ID: 395602 [Multi-domain]  Cd Length: 531  Bit Score: 41.30  E-value: 1.15e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 16131103   146 GKKVAIIGAGPAGLACADVLTRNGVKAVVFDRHPEIGGLLTF 187
Cdd:pfam00743   1 AKKVAVIGAGVSGLASIKCCLEEGLEPTCFERSDDIGGLWRF 42
PRK06416 PRK06416
dihydrolipoamide dehydrogenase; Reviewed
350-466 1.22e-03

dihydrolipoamide dehydrogenase; Reviewed


Pssm-ID: 235798 [Multi-domain]  Cd Length: 462  Bit Score: 41.28  E-value: 1.22e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  350 GIEVNGNGKVSGVkmvrtemgEPDAKGRRRAEIVAGSEHIVPADAVIMAFGFRPhNME--WLAKHSVELDsQGRIIApeg 427
Cdd:PRK06416 227 GIKIKTGAKAKKV--------EQTDDGVTVTLEDGGKEETLEADYVLVAVGRRP-NTEnlGLEELGVKTD-RGFIEV--- 293
                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 16131103  428 sDNAFQTSNPKIFAGGDIVRGSDLVVTAIAEGRKAADGI 466
Cdd:PRK06416 294 -DEQLRTNVPNIYAIGDIVGGPMLAHKASAEGIIAAEAI 331
FAD_binding_2 pfam00890
FAD binding domain; This family includes members that bind FAD. This family includes the ...
149-418 1.32e-03

FAD binding domain; This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase.


Pssm-ID: 395718 [Multi-domain]  Cd Length: 398  Bit Score: 41.12  E-value: 1.32e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103   149 VAIIGAGPAGLACADVLTRNGVKAVVFDRHPEIGGLLTFGipafklekevmtrrreiftGMGIEFKLNTEVGRDvqlddl 228
Cdd:pfam00890   2 VLVIGGGLAGLAAALAAAEAGLKVAVVEKGQPFGGATAWS-------------------SGGIDALGNPPQGGI------ 56
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103   229 lSDYDAVFlgvgtYQSMRGGLENEDADGVYAalpfLIANTKQLMGFGETRDEPFVSMEGKRVVV--LGGgdtamdcvrts 306
Cdd:pfam00890  57 -DSPELHP-----TDTLKGLDELADHPYVEA----FVEAAPEAVDWLEALGVPFSRTEDGHLDLrpLGG----------- 115
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103   307 VRQGAKHVTCAYRRDEENMPGSR---REVKNAREEGVEFKFNVQPLGIEVNgNGKVSGVKMVrtemgepDAKGRRRAEIV 383
Cdd:pfam00890 116 LSATWRTPHDAADRRRGLGTGHAllaRLLEGLRKAGVDFQPRTAADDLIVE-DGRVTGAVVE-------NRRNGREVRIR 187
                         250       260       270
                  ....*....|....*....|....*....|....*
gi 16131103   384 AGSehivpadAVIMAFGFRPHNMEWLAKHSVELDS 418
Cdd:pfam00890 188 AIA-------AVLLATGGFGRLAELLLPAAGYADT 215
PLN02507 PLN02507
glutathione reductase
277-459 1.70e-03

glutathione reductase


Pssm-ID: 215281 [Multi-domain]  Cd Length: 499  Bit Score: 40.95  E-value: 1.70e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  277 TRDEPfVSMEG--KRVVVLGGGDTAMDCVRTSVRQGAkHVTCAYRR-------DEEnmpgsRREV--KNAREEGVefkfN 345
Cdd:PLN02507 192 TSDEA-LSLEElpKRAVVLGGGYIAVEFASIWRGMGA-TVDLFFRKelplrgfDDE-----MRAVvaRNLEGRGI----N 260
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  346 VQPlGIEVNGNGKVSGVKMVRTEMGEpdakgrrraeivagsEHIvpADAVIMAFGFRPH----NMEWLAkhsVELDSQGR 421
Cdd:PLN02507 261 LHP-RTNLTQLTKTEGGIKVITDHGE---------------EFV--ADVVLFATGRAPNtkrlNLEAVG---VELDKAGA 319
                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 16131103  422 IIAPEGSdnafQTSNPKIFAGGDIVRGSDLVVTAIAEG 459
Cdd:PLN02507 320 VKVDEYS----RTNIPSIWAIGDVTNRINLTPVALMEG 353
TIGR00275 TIGR00275
flavoprotein, HI0933 family; The model when searched with a partial length search brings in ...
150-182 2.04e-03

flavoprotein, HI0933 family; The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae. [Unknown function, Enzymes of unknown specificity]


Pssm-ID: 272992 [Multi-domain]  Cd Length: 400  Bit Score: 40.27  E-value: 2.04e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 16131103   150 AIIGAGPAGLACADVLTRNGVKAVVFDRHPEIG 182
Cdd:TIGR00275   1 IIIGGGAAGLMAAITAARAGLSVLLLEKNKKIG 33
HdrA COG1148
Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion];
147-219 2.18e-03

Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion];


Pssm-ID: 440762 [Multi-domain]  Cd Length: 563  Bit Score: 40.61  E-value: 2.18e-03
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 16131103 147 KKVAIIGAGPAGLACADVLTRNGVKAVVFDRHPEIGGL---LTFGIPAFKLEKEVMTRR-REIFTGMGIEFKLNTEV 219
Cdd:COG1148 141 KRALVIGGGIAGMTAALELAEQGYEVYLVEKEPELGGRaaqLHKTFPGLDCPQCILEPLiAEVEANPNITVYTGAEV 217
PRK06753 PRK06753
hypothetical protein; Provisional
148-181 2.24e-03

hypothetical protein; Provisional


Pssm-ID: 168661 [Multi-domain]  Cd Length: 373  Bit Score: 40.06  E-value: 2.24e-03
                         10        20        30
                 ....*....|....*....|....*....|....
gi 16131103  148 KVAIIGAGPAGLACADVLTRNGVKAVVFDRHPEI 181
Cdd:PRK06753   2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESV 35
SfcA COG0281
Malic enzyme [Energy production and conversion]; Malic enzyme is part of the Pathway/BioSystem: ...
139-186 2.43e-03

Malic enzyme [Energy production and conversion]; Malic enzyme is part of the Pathway/BioSystem: Urea cycle


Pssm-ID: 440050 [Multi-domain]  Cd Length: 414  Bit Score: 39.99  E-value: 2.43e-03
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 16131103 139 MSGVKQTGK-----KVAIIGAGPAGLACADVLTRNGVKA---VVFDRHpeigGLLT 186
Cdd:COG0281 179 LNALKLVGKkledqKIVINGAGAAGIAIARLLVAAGLSEeniIMVDSK----GLLY 230
mnmC PRK01747
bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent ...
147-182 2.50e-03

bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC;


Pssm-ID: 234978 [Multi-domain]  Cd Length: 662  Bit Score: 40.21  E-value: 2.50e-03
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 16131103  147 KKVAIIGAGPAGLACADVLTRNGVKAVVFDRHPEIG 182
Cdd:PRK01747 261 RDAAIIGGGIAGAALALALARRGWQVTLYEADEAPA 296
Tdh COG1063
Threonine dehydrogenase or related Zn-dependent dehydrogenase [Amino acid transport and ...
138-250 3.11e-03

Threonine dehydrogenase or related Zn-dependent dehydrogenase [Amino acid transport and metabolism, General function prediction only]; Threonine dehydrogenase or related Zn-dependent dehydrogenase is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway


Pssm-ID: 440683 [Multi-domain]  Cd Length: 341  Bit Score: 39.74  E-value: 3.11e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103 138 DMSGVKQtGKKVAIIGAGPAGLACADVLTRNGVKAV-VFDRHPEigglltfgipafklekevmtrRREIFTGMGIEFKLN 216
Cdd:COG1063 155 ERAGVKP-GDTVLVIGAGPIGLLAALAARLAGAARViVVDRNPE---------------------RLELARELGADAVVN 212
                        90       100       110       120
                ....*....|....*....|....*....|....*....|
gi 16131103 217 TevgRDVQLDDLLSD------YDAVFLGVGTYQSMRGGLE 250
Cdd:COG1063 213 P---REEDLVEAVREltggrgADVVIEAVGAPAALEQALD 249
PRK13748 PRK13748
putative mercuric reductase; Provisional
350-463 3.62e-03

putative mercuric reductase; Provisional


Pssm-ID: 184298 [Multi-domain]  Cd Length: 561  Bit Score: 39.75  E-value: 3.62e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131103  350 GIEVNGNGKVSGVKMVRTEMGEPDAKGRRRAeivagsehivpaDAVIMAFGFRPhNMEWLAKHS--VELDSQGRIIApeg 427
Cdd:PRK13748 324 GIEVLEHTQASQVAHVDGEFVLTTGHGELRA------------DKLLVATGRAP-NTRSLALDAagVTVNAQGAIVI--- 387
                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 16131103  428 sDNAFQTSNPKIFAGGDIVRGSDLVVTAIAEGRKAA 463
Cdd:PRK13748 388 -DQGMRTSVPHIYAAGDCTDQPQFVYVAAAAGTRAA 422
FixC COG0644
Dehydrogenase (flavoprotein) [Energy production and conversion];
154-182 3.71e-03

Dehydrogenase (flavoprotein) [Energy production and conversion];


Pssm-ID: 440409 [Multi-domain]  Cd Length: 281  Bit Score: 39.18  E-value: 3.71e-03
                        10        20
                ....*....|....*....|....*....
gi 16131103 154 AGPAGLACADVLTRNGVKAVVFDRHPEIG 182
Cdd:COG0644   1 AGPAGSAAARRLARAGLSVLLLEKGSFPG 29
PRK07538 PRK07538
hypothetical protein; Provisional
148-181 5.34e-03

hypothetical protein; Provisional


Pssm-ID: 236046 [Multi-domain]  Cd Length: 413  Bit Score: 39.11  E-value: 5.34e-03
                         10        20        30
                 ....*....|....*....|....*....|....
gi 16131103  148 KVAIIGAGPAGLACADVLTRNGVKAVVFDRHPEI 181
Cdd:PRK07538   2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPEL 35
PLN00093 PLN00093
geranylgeranyl diphosphate reductase; Provisional
148-202 5.56e-03

geranylgeranyl diphosphate reductase; Provisional


Pssm-ID: 177713 [Multi-domain]  Cd Length: 450  Bit Score: 38.96  E-value: 5.56e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 16131103  148 KVAIIGAGPAGLACADVLTRNGVKAVVFDRHPE----IGGlltfGIP-----AFKLEKEVMTRR 202
Cdd:PLN00093  41 RVAVIGGGPAGACAAETLAKGGIETFLIERKLDnakpCGG----AIPlcmvgEFDLPLDIIDRK 100
PRK00711 PRK00711
D-amino acid dehydrogenase;
335-400 6.15e-03

D-amino acid dehydrogenase;


Pssm-ID: 234819 [Multi-domain]  Cd Length: 416  Bit Score: 39.01  E-value: 6.15e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 16131103  335 AREEGVEFKFNVQPLGIEVNGnGKVSGvkmVRTEMGepdakgrrraeivagsehIVPADAVIMAFG 400
Cdd:PRK00711 211 AEQLGVKFRFNTPVDGLLVEG-GRITG---VQTGGG------------------VITADAYVVALG 254
PRK13512 PRK13512
coenzyme A disulfide reductase; Provisional
377-446 6.28e-03

coenzyme A disulfide reductase; Provisional


Pssm-ID: 184103 [Multi-domain]  Cd Length: 438  Bit Score: 39.00  E-value: 6.28e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 16131103  377 RRRAEIVAGSEHIVP--------ADAVIMAFGFRPhNMEWLAKHSVELDSQGRIIApegsDNAFQTSNPKIFAGGDIV 446
Cdd:PRK13512 207 RLNEEIDAINGNEVTfksgkvehYDMIIEGVGTHP-NSKFIESSNIKLDDKGFIPV----NDKFETNVPNIYAIGDII 279
PRK07588 PRK07588
FAD-binding domain;
147-215 6.94e-03

FAD-binding domain;


Pssm-ID: 169028 [Multi-domain]  Cd Length: 391  Bit Score: 38.56  E-value: 6.94e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 16131103  147 KKVAIIGAGPAGLACADVLTRNGVKAVVFDRHPEI--GG-LLTFGIPAFklekEVMTRrreiftgMGIEFKL 215
Cdd:PRK07588   1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELrtGGyMVDFWGVGY----EVAKR-------MGITDQL 61
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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