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Conserved domains on  [gi|90111603|ref|NP_417963|]
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starvation lipoprotein [Escherichia coli str. K-12 substr. MG1655]

Protein Classification

Slp family lipoprotein( domain architecture ID 10015782)

Slp family lipoprotein similar to Escherichia coli outer membrane protein Slp that may help to stabilize the outer membrane during carbon starvation and stationary phase

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
slp TIGR00752
outer membrane lipoprotein, Slp family; Slp superfamily members are present in the ...
2-184 1.17e-107

outer membrane lipoprotein, Slp family; Slp superfamily members are present in the Gram-negative gamma proteobacteria Escherichia coli, which also contains a close paralog, Haemophilus influenzae and Pasteurella multocida and Vibrio cholera. The known members of the family to date share a motif LX[GA]C near the N-terminus, which is compatible with the possibility that the protein is modified into a lipoprotein with Cys as the new N-terminus. Slp from Escherichia coli is known to be a lipoprotein of the outer membrane and to be expressed in response to carbon starvation. [Cell envelope, Other]


:

Pssm-ID: 273251  Cd Length: 182  Bit Score: 305.67  E-value: 1.17e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111603     2 NMTKGALILSLSFLLAACSSIPQNIKGNNqPDIQKSFVAVHNQPGLYVGQQARFGGKVINVINGKTDTLLEISVLPLDSY 81
Cdd:TIGR00752   1 NGKKGLLFTALCFGLTGCIAPPKGIKGER-PFSQNSYVEVSPQPLLYVGQTARFGGKVVNVTNLANQTKLEIASLPLDSI 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111603    82 AKPDIEANYQGRLLARQSGFLDPVNYRNHFVTILGTIQGEQPGFINKVPYNFLEVNMQGIQVWHL-REVVNTTYNLWDYG 160
Cdd:TIGR00752  80 AKPFVELQSDGRFIAYFNGFLDPVNLRERYVTVGGQIAGTEKGKIEQAPYTFPVVQADGYRIWHLsTTVDYTPTDDWDYG 159
                         170       180
                  ....*....|....*....|....
gi 90111603   161 yGAFWPEPGWGAPYYTNAVSQVTP 184
Cdd:TIGR00752 160 -GDDWPFFGWGHLWYVQPEIHVYL 182
 
Name Accession Description Interval E-value
slp TIGR00752
outer membrane lipoprotein, Slp family; Slp superfamily members are present in the ...
2-184 1.17e-107

outer membrane lipoprotein, Slp family; Slp superfamily members are present in the Gram-negative gamma proteobacteria Escherichia coli, which also contains a close paralog, Haemophilus influenzae and Pasteurella multocida and Vibrio cholera. The known members of the family to date share a motif LX[GA]C near the N-terminus, which is compatible with the possibility that the protein is modified into a lipoprotein with Cys as the new N-terminus. Slp from Escherichia coli is known to be a lipoprotein of the outer membrane and to be expressed in response to carbon starvation. [Cell envelope, Other]


Pssm-ID: 273251  Cd Length: 182  Bit Score: 305.67  E-value: 1.17e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111603     2 NMTKGALILSLSFLLAACSSIPQNIKGNNqPDIQKSFVAVHNQPGLYVGQQARFGGKVINVINGKTDTLLEISVLPLDSY 81
Cdd:TIGR00752   1 NGKKGLLFTALCFGLTGCIAPPKGIKGER-PFSQNSYVEVSPQPLLYVGQTARFGGKVVNVTNLANQTKLEIASLPLDSI 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111603    82 AKPDIEANYQGRLLARQSGFLDPVNYRNHFVTILGTIQGEQPGFINKVPYNFLEVNMQGIQVWHL-REVVNTTYNLWDYG 160
Cdd:TIGR00752  80 AKPFVELQSDGRFIAYFNGFLDPVNLRERYVTVGGQIAGTEKGKIEQAPYTFPVVQADGYRIWHLsTTVDYTPTDDWDYG 159
                         170       180
                  ....*....|....*....|....
gi 90111603   161 yGAFWPEPGWGAPYYTNAVSQVTP 184
Cdd:TIGR00752 160 -GDDWPFFGWGHLWYVQPEIHVYL 182
Slp pfam03843
Outer membrane lipoprotein Slp family;
18-175 2.49e-55

Outer membrane lipoprotein Slp family;


Pssm-ID: 427544  Cd Length: 151  Bit Score: 172.02  E-value: 2.49e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111603    18 ACSSIPQNIKGNNQPDIqkSFVAVHNQPGLYVGQQARFGGKVINVINGKTDTLLEISVLPLDSYAKPDIEANYQGRLLAR 97
Cdd:pfam03843   1 GCASVPKAIRGTPPTDP--SLSQVKAAPDAYKGKTVRWGGVIVNVRNKPDGTRLEIVSRPLDSSGRPELGDESEGRFLAR 78
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 90111603    98 QSGFLDPVNY-RNHFVTILGTIQGEQPGFINKVPYNFLEVNMQGIQVWHLREVVNTtynlwdYGYGAFWPEPGWGAPYY 175
Cdd:pfam03843  79 VPGFLDPAIYaKGRLVTVVGTLKGTETGKIGEYPYTYPVVAATGYYLWPEERYVVY------YPYPYYYPPYWYYGPYW 151
Slp COG3065
Starvation-inducible outer membrane lipoprotein Slp [Cell wall/membrane/envelope biogenesis];
1-170 4.13e-55

Starvation-inducible outer membrane lipoprotein Slp [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442299  Cd Length: 172  Bit Score: 172.40  E-value: 4.13e-55
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111603   1 MNMTKGALILSLSFLLAACSSIPQNIKGnnQPDIQKSFVAVHNQPGLYVGQQARFGGKVINVINGKTDTLLEISVLPLDS 80
Cdd:COG3065   3 SRLMRLLLLLLAALLLAGCATVPEAIRG--ASPTPLSLSAVLAAPEAYVGQEVRWGGVIVSVENLEDRTRLEVVAYPLDS 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111603  81 YAKPDIEANYQGRLLARQSGFLDPVNY-RNHFVTILGTIQGEQPGFINKVPYNFLEVNMQGIQVWHLREVVNTTYNL--W 157
Cdd:COG3065  81 SGRPDLGDPSQGRFLARVPGFLDPADYaKGRLVTVVGTVTGSETGKIGEAPYRYPVVDADGYHLWPVRQQVVYPYYYdpY 160
                       170
                ....*....|...
gi 90111603 158 DYGYGaFWPEPGW 170
Cdd:COG3065 161 YWGYG-PGPGYGW 172
rpl18p PRK08569
50S ribosomal protein L18P; Reviewed
47-121 1.21e-03

50S ribosomal protein L18P; Reviewed


Pssm-ID: 236294 [Multi-domain]  Cd Length: 193  Bit Score: 37.99  E-value: 1.21e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111603   47 LYVG-QQARFGGKVINVINGKTDTLLEI----SVLPLDS---------YAKPDIEANYQGRLLARQSGFLDPVNYRNHFV 112
Cdd:PRK08569 103 LDIGlHRPTKGSRVFAALKGAIDAGLEIphgeEVLPDEDrirgehiaeYAESLKEENYKKQFSKYLERGLDPEDLPEHFE 182

                 ....*....
gi 90111603  113 TILGTIQGE 121
Cdd:PRK08569 183 EVKEKILEE 191
 
Name Accession Description Interval E-value
slp TIGR00752
outer membrane lipoprotein, Slp family; Slp superfamily members are present in the ...
2-184 1.17e-107

outer membrane lipoprotein, Slp family; Slp superfamily members are present in the Gram-negative gamma proteobacteria Escherichia coli, which also contains a close paralog, Haemophilus influenzae and Pasteurella multocida and Vibrio cholera. The known members of the family to date share a motif LX[GA]C near the N-terminus, which is compatible with the possibility that the protein is modified into a lipoprotein with Cys as the new N-terminus. Slp from Escherichia coli is known to be a lipoprotein of the outer membrane and to be expressed in response to carbon starvation. [Cell envelope, Other]


Pssm-ID: 273251  Cd Length: 182  Bit Score: 305.67  E-value: 1.17e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111603     2 NMTKGALILSLSFLLAACSSIPQNIKGNNqPDIQKSFVAVHNQPGLYVGQQARFGGKVINVINGKTDTLLEISVLPLDSY 81
Cdd:TIGR00752   1 NGKKGLLFTALCFGLTGCIAPPKGIKGER-PFSQNSYVEVSPQPLLYVGQTARFGGKVVNVTNLANQTKLEIASLPLDSI 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111603    82 AKPDIEANYQGRLLARQSGFLDPVNYRNHFVTILGTIQGEQPGFINKVPYNFLEVNMQGIQVWHL-REVVNTTYNLWDYG 160
Cdd:TIGR00752  80 AKPFVELQSDGRFIAYFNGFLDPVNLRERYVTVGGQIAGTEKGKIEQAPYTFPVVQADGYRIWHLsTTVDYTPTDDWDYG 159
                         170       180
                  ....*....|....*....|....
gi 90111603   161 yGAFWPEPGWGAPYYTNAVSQVTP 184
Cdd:TIGR00752 160 -GDDWPFFGWGHLWYVQPEIHVYL 182
Slp pfam03843
Outer membrane lipoprotein Slp family;
18-175 2.49e-55

Outer membrane lipoprotein Slp family;


Pssm-ID: 427544  Cd Length: 151  Bit Score: 172.02  E-value: 2.49e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111603    18 ACSSIPQNIKGNNQPDIqkSFVAVHNQPGLYVGQQARFGGKVINVINGKTDTLLEISVLPLDSYAKPDIEANYQGRLLAR 97
Cdd:pfam03843   1 GCASVPKAIRGTPPTDP--SLSQVKAAPDAYKGKTVRWGGVIVNVRNKPDGTRLEIVSRPLDSSGRPELGDESEGRFLAR 78
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 90111603    98 QSGFLDPVNY-RNHFVTILGTIQGEQPGFINKVPYNFLEVNMQGIQVWHLREVVNTtynlwdYGYGAFWPEPGWGAPYY 175
Cdd:pfam03843  79 VPGFLDPAIYaKGRLVTVVGTLKGTETGKIGEYPYTYPVVAATGYYLWPEERYVVY------YPYPYYYPPYWYYGPYW 151
Slp COG3065
Starvation-inducible outer membrane lipoprotein Slp [Cell wall/membrane/envelope biogenesis];
1-170 4.13e-55

Starvation-inducible outer membrane lipoprotein Slp [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442299  Cd Length: 172  Bit Score: 172.40  E-value: 4.13e-55
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111603   1 MNMTKGALILSLSFLLAACSSIPQNIKGnnQPDIQKSFVAVHNQPGLYVGQQARFGGKVINVINGKTDTLLEISVLPLDS 80
Cdd:COG3065   3 SRLMRLLLLLLAALLLAGCATVPEAIRG--ASPTPLSLSAVLAAPEAYVGQEVRWGGVIVSVENLEDRTRLEVVAYPLDS 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111603  81 YAKPDIEANYQGRLLARQSGFLDPVNY-RNHFVTILGTIQGEQPGFINKVPYNFLEVNMQGIQVWHLREVVNTTYNL--W 157
Cdd:COG3065  81 SGRPDLGDPSQGRFLARVPGFLDPADYaKGRLVTVVGTVTGSETGKIGEAPYRYPVVDADGYHLWPVRQQVVYPYYYdpY 160
                       170
                ....*....|...
gi 90111603 158 DYGYGaFWPEPGW 170
Cdd:COG3065 161 YWGYG-PGPGYGW 172
rpl18p PRK08569
50S ribosomal protein L18P; Reviewed
47-121 1.21e-03

50S ribosomal protein L18P; Reviewed


Pssm-ID: 236294 [Multi-domain]  Cd Length: 193  Bit Score: 37.99  E-value: 1.21e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111603   47 LYVG-QQARFGGKVINVINGKTDTLLEI----SVLPLDS---------YAKPDIEANYQGRLLARQSGFLDPVNYRNHFV 112
Cdd:PRK08569 103 LDIGlHRPTKGSRVFAALKGAIDAGLEIphgeEVLPDEDrirgehiaeYAESLKEENYKKQFSKYLERGLDPEDLPEHFE 182

                 ....*....
gi 90111603  113 TILGTIQGE 121
Cdd:PRK08569 183 EVKEKILEE 191
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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