|
Name |
Accession |
Description |
Interval |
E-value |
| malF |
PRK10999 |
maltose ABC transporter permease MalF; |
1-514 |
0e+00 |
|
maltose ABC transporter permease MalF;
Pssm-ID: 236816 [Multi-domain] Cd Length: 520 Bit Score: 1039.15 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131859 1 MDVIKKKHWWQSDALKWSVLGLLGLLVGYLVVLMYAQGEYLFAITTLILSSAGLYIFANRKAYAWRYVYPGMAGMGLFVL 80
Cdd:PRK10999 4 MDVIKKKHWWQSDALKWSVLGLLGLLVGYLVVLMYAQGEYLFAILTLILSSLGLYIFANRKAYAWRYVYPGLAGMGLFVL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131859 81 FPLVCTIAIAFTNYSSTNQLTFERAQEVLLDRSWQAGKTYNFGLYPAGDEWQLALSDGETGKNYLSDAFKF--GGEQKLQ 158
Cdd:PRK10999 84 FPLVCTIAIAFTNYSSTNQLTFERAQSVLLDRTYQAGKTYNFGLYPAGDEWQLALTDGETGKNYLSEPFSLeaGGEQKLQ 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131859 159 LKETTAQPEGERANLRVITQNRQALSDITAILPDGNKVMMSSLRQFSGTQPLYTLDGDG-TLTNNQSGVKYRPNNQIGFY 237
Cdd:PRK10999 164 LKETDALPEGERAPLRVITQNRQALSQITAVLPDGNKLRMSSLRQFSGTKPLYTLDDDGtTLTNNQSGVKYRPNNDIGFY 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131859 238 QSITADGNWGDEKLSPGYTVTTGWKNFTRVFTDEGIQKPFLAIFVWTVVFSLITVFLTVAVGMVLACLVQWEALRGKAVY 317
Cdd:PRK10999 244 QSINADGNWGGEKLSPGFTVTIGWKNFTRVFTDEGIQKPFIAIFIWTVVFSLLTVVLTVAVGMVLACLVQWEALKGKAVY 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131859 318 RVLLILPYAVPSFISILIFKGLFNQSFGEINMMLSALFGVKPAWFSDPTTARTMLIIVNTWLGYPYMMILCMGLLKAIPD 397
Cdd:PRK10999 324 RVLLILPYAVPSFISILIFKGLFNQSFGEINMMLSALFGIKPAWFSDPTLAKTMILIVNTWLGYPYMMILCMGLLKAIPD 403
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131859 398 DLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNGGPDRLGTTTPAGYTDLLVNYTYRIAFE 477
Cdd:PRK10999 404 DLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNGGPDMIGTTTPAGYTDLLVSYTYRIAFE 483
|
490 500 510
....*....|....*....|....*....|....*..
gi 16131859 478 GGGGQDFGLAAAIATLIFLLVGALAIVNLKATRMKFD 514
Cdd:PRK10999 484 GGGGQDFGLAAAIATLIFLLVGALAILNLKATKMKFD 520
|
|
| MalF_P2 |
pfam14785 |
Maltose transport system permease protein MalF P2 domain; This is the second periplasmic ... |
100-260 |
9.30e-90 |
|
Maltose transport system permease protein MalF P2 domain; This is the second periplasmic domain (P2 domain) of the maltose transport system permease protein MalF.
Pssm-ID: 434209 Cd Length: 164 Bit Score: 271.82 E-value: 9.30e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131859 100 LTFERAQEVLLDRSWQAGKTYNFGLYPAGDEWQLALSDGETGKNYLSDAFKF--GGEQKLQLKETTAQPEGERANLRVIT 177
Cdd:pfam14785 1 LSFERAQSVLLSRTYQSGESYPFTLYPSGDGYRLALEDGESGQLLVSEPFTLdgAGEQKLALEPAESLPTGEKAPLREIT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131859 178 QNRQALSDITAILPDGNKVMMSSLRQFSGTQPLYTLDGDG-TLTNNQSGVKYRPNNQIGFYQSITADGNWGDEKLSPGYT 256
Cdd:pfam14785 81 QNRQALSQLVLVLPDGEELRMSGLRQFAAVKPLYTLQEDGeTLTNNQTGEIYRPNMEIGFYQAVDEDGEWVGERVSPGFT 160
|
....
gi 16131859 257 VTTG 260
Cdd:pfam14785 161 VTIG 164
|
|
| UgpA |
COG1175 |
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]; |
260-510 |
1.08e-65 |
|
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440788 [Multi-domain] Cd Length: 298 Bit Score: 214.61 E-value: 1.08e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131859 260 GWKNFTRVFTDEGiqkpFLAIFVWTVVFSLITVFLTVAVGMVLACLVqWEALRGKAVYRVLLILPYAVPSFISILIFKGL 339
Cdd:COG1175 61 GLDNYARLFTDPR----FWNALGNTLLFTVVSVPLQLVLGLLLALLL-NRKLRGRGFFRTLFFLPWVISPVVVALIWKWL 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131859 340 FNQSFGEINMMLSALFGVKPAWFSDPTTARTMLIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITL 419
Cdd:COG1175 136 FNPDYGLLNALLGALGLEPINWLGDPSLALPAVIIVTVWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITL 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131859 420 PLLIKPLTPLMIASFAFNFNNFVLIQLLTNGGpdrlgtttPAGYTDLLVNYTYRIAFEgggGQDFGLAAAIATLIFLLVG 499
Cdd:COG1175 216 PLLRPTILFVLVLSTIGALQVFDLVYVLTGGG--------PGNSTTTLVLYIYQTAFQ---QFDFGYASAIAVVLFLIIL 284
|
250
....*....|.
gi 16131859 500 ALAIVNLKATR 510
Cdd:COG1175 285 VLTLLQLRLLR 295
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
281-498 |
5.07e-23 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 96.19 E-value: 5.07e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131859 281 FVWTVVFSLITVFLTVAVGMVLACLVQWEALRGKAVYRVLLILPYAVPSFISILIfkglfnqsfgeinmmLSALFGVKPA 360
Cdd:cd06261 1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLL---------------LVLLFGVLLG 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131859 361 WFSDPTTARTMLIIVNTWLGyPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNN 440
Cdd:cd06261 66 WGILPGLGLPALILALLLIA-PFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGE 144
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 16131859 441 FVLIQLLTNGGPDRLGTttpagytdllvnYTYRIaFEGGGGQDFGLAAAIATLIFLLV 498
Cdd:cd06261 145 FALVSFLGGGEAPGPGT------------GLLLI-FAILFPGDLGVAAAVALILLLLS 189
|
|
| Mo_ABC_porter |
TIGR01581 |
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively ... |
259-435 |
1.86e-10 |
|
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively weak homology compared to its neighbor clades, the molybdate (TIGR02141) and sulfate (TIGR00969) porters. Neighbor-Joining, PAM-distance phylogenetic trees support the separation of the clades in this way. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.
Pssm-ID: 130643 Cd Length: 225 Bit Score: 60.87 E-value: 1.86e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131859 259 TGWKNFTRVFTDEGIQKpflAIFVwTVVFSLITVFLTVAVGMVLACLVQWEALRGKAVYRVLLILPYAVPSFISILIFKG 338
Cdd:TIGR01581 5 LGGSHILSALTDPENIK---ALRL-SLATSLASLLLAVIIGIPTAYVLARVRFPLKKLLDTLLDLPMVLPPLVAGLALLL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131859 339 LFNqSFGEINMMLSALfGVKPAwFSdpttaRTMLIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKIT 418
Cdd:TIGR01581 81 LFG-RNGLLGPYLEAA-GIQVI-FS-----TLGVVLAQTFVASPYYVRVARSTFKSVDPRYEDVARSLGAGPLETFRKIT 152
|
170
....*....|....*..
gi 16131859 419 LPLLIKPLTPLMIASFA 435
Cdd:TIGR01581 153 LPMARPGLLAGLVLAWA 169
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| malF |
PRK10999 |
maltose ABC transporter permease MalF; |
1-514 |
0e+00 |
|
maltose ABC transporter permease MalF;
Pssm-ID: 236816 [Multi-domain] Cd Length: 520 Bit Score: 1039.15 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131859 1 MDVIKKKHWWQSDALKWSVLGLLGLLVGYLVVLMYAQGEYLFAITTLILSSAGLYIFANRKAYAWRYVYPGMAGMGLFVL 80
Cdd:PRK10999 4 MDVIKKKHWWQSDALKWSVLGLLGLLVGYLVVLMYAQGEYLFAILTLILSSLGLYIFANRKAYAWRYVYPGLAGMGLFVL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131859 81 FPLVCTIAIAFTNYSSTNQLTFERAQEVLLDRSWQAGKTYNFGLYPAGDEWQLALSDGETGKNYLSDAFKF--GGEQKLQ 158
Cdd:PRK10999 84 FPLVCTIAIAFTNYSSTNQLTFERAQSVLLDRTYQAGKTYNFGLYPAGDEWQLALTDGETGKNYLSEPFSLeaGGEQKLQ 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131859 159 LKETTAQPEGERANLRVITQNRQALSDITAILPDGNKVMMSSLRQFSGTQPLYTLDGDG-TLTNNQSGVKYRPNNQIGFY 237
Cdd:PRK10999 164 LKETDALPEGERAPLRVITQNRQALSQITAVLPDGNKLRMSSLRQFSGTKPLYTLDDDGtTLTNNQSGVKYRPNNDIGFY 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131859 238 QSITADGNWGDEKLSPGYTVTTGWKNFTRVFTDEGIQKPFLAIFVWTVVFSLITVFLTVAVGMVLACLVQWEALRGKAVY 317
Cdd:PRK10999 244 QSINADGNWGGEKLSPGFTVTIGWKNFTRVFTDEGIQKPFIAIFIWTVVFSLLTVVLTVAVGMVLACLVQWEALKGKAVY 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131859 318 RVLLILPYAVPSFISILIFKGLFNQSFGEINMMLSALFGVKPAWFSDPTTARTMLIIVNTWLGYPYMMILCMGLLKAIPD 397
Cdd:PRK10999 324 RVLLILPYAVPSFISILIFKGLFNQSFGEINMMLSALFGIKPAWFSDPTLAKTMILIVNTWLGYPYMMILCMGLLKAIPD 403
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131859 398 DLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNGGPDRLGTTTPAGYTDLLVNYTYRIAFE 477
Cdd:PRK10999 404 DLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNGGPDMIGTTTPAGYTDLLVSYTYRIAFE 483
|
490 500 510
....*....|....*....|....*....|....*..
gi 16131859 478 GGGGQDFGLAAAIATLIFLLVGALAIVNLKATRMKFD 514
Cdd:PRK10999 484 GGGGQDFGLAAAIATLIFLLVGALAILNLKATKMKFD 520
|
|
| MalF_P2 |
pfam14785 |
Maltose transport system permease protein MalF P2 domain; This is the second periplasmic ... |
100-260 |
9.30e-90 |
|
Maltose transport system permease protein MalF P2 domain; This is the second periplasmic domain (P2 domain) of the maltose transport system permease protein MalF.
Pssm-ID: 434209 Cd Length: 164 Bit Score: 271.82 E-value: 9.30e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131859 100 LTFERAQEVLLDRSWQAGKTYNFGLYPAGDEWQLALSDGETGKNYLSDAFKF--GGEQKLQLKETTAQPEGERANLRVIT 177
Cdd:pfam14785 1 LSFERAQSVLLSRTYQSGESYPFTLYPSGDGYRLALEDGESGQLLVSEPFTLdgAGEQKLALEPAESLPTGEKAPLREIT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131859 178 QNRQALSDITAILPDGNKVMMSSLRQFSGTQPLYTLDGDG-TLTNNQSGVKYRPNNQIGFYQSITADGNWGDEKLSPGYT 256
Cdd:pfam14785 81 QNRQALSQLVLVLPDGEELRMSGLRQFAAVKPLYTLQEDGeTLTNNQTGEIYRPNMEIGFYQAVDEDGEWVGERVSPGFT 160
|
....
gi 16131859 257 VTTG 260
Cdd:pfam14785 161 VTIG 164
|
|
| UgpA |
COG1175 |
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]; |
260-510 |
1.08e-65 |
|
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440788 [Multi-domain] Cd Length: 298 Bit Score: 214.61 E-value: 1.08e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131859 260 GWKNFTRVFTDEGiqkpFLAIFVWTVVFSLITVFLTVAVGMVLACLVqWEALRGKAVYRVLLILPYAVPSFISILIFKGL 339
Cdd:COG1175 61 GLDNYARLFTDPR----FWNALGNTLLFTVVSVPLQLVLGLLLALLL-NRKLRGRGFFRTLFFLPWVISPVVVALIWKWL 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131859 340 FNQSFGEINMMLSALFGVKPAWFSDPTTARTMLIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITL 419
Cdd:COG1175 136 FNPDYGLLNALLGALGLEPINWLGDPSLALPAVIIVTVWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITL 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131859 420 PLLIKPLTPLMIASFAFNFNNFVLIQLLTNGGpdrlgtttPAGYTDLLVNYTYRIAFEgggGQDFGLAAAIATLIFLLVG 499
Cdd:COG1175 216 PLLRPTILFVLVLSTIGALQVFDLVYVLTGGG--------PGNSTTTLVLYIYQTAFQ---QFDFGYASAIAVVLFLIIL 284
|
250
....*....|.
gi 16131859 500 ALAIVNLKATR 510
Cdd:COG1175 285 VLTLLQLRLLR 295
|
|
| FbpB |
COG1178 |
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]; |
257-510 |
5.75e-27 |
|
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440791 [Multi-domain] Cd Length: 538 Bit Score: 114.10 E-value: 5.75e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131859 257 VTTGWKNFTRVFTDEGiqkpFLAIFVWTVVFSLITVFLTVAVGMVLACLVQWEALRGKAVYRVLLILPYAVPSFISILIF 336
Cdd:COG1178 36 FTDGLANFWALLSDPY----LWRALGNTLLLALLVTLLSLLLGVPLAWLLARTDFPGRRLLRWLLLLPLALPPYVVALAW 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131859 337 KGLFNQSfGEINMMLSALFGVKPAWFSDPTtartMLIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFK 416
Cdd:COG1178 112 IALFGPN-GLLNTLLRALFGLEPPDIYGLG----GIILVLVLFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRR 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131859 417 ITLPLLIKPLTPLMIASFAFNFNNFVLIQLLtnggpdRLGTTTpagytdllvnYTYRIAFEGGGGQDFGLAAAIATLIFL 496
Cdd:COG1178 187 VTLPLLRPAIAAGALLVFLLCLADFGTPLVL------GGGYTT----------LTTAIYQAWLGDFDLGAAAALALVLLL 250
|
250
....*....|....
gi 16131859 497 LVGALAIVNLKATR 510
Cdd:COG1178 251 LVLLLLLLERRLRR 264
|
|
| PRK10561 |
PRK10561 |
sn-glycerol-3-phosphate ABC transporter permease UgpA; |
260-512 |
2.35e-23 |
|
sn-glycerol-3-phosphate ABC transporter permease UgpA;
Pssm-ID: 182550 [Multi-domain] Cd Length: 280 Bit Score: 99.90 E-value: 2.35e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131859 260 GWKNFTRVFTDEgiqkPFLAIFVWTVVFSLITVFLTVAVGMVLACLVQWeALRGKAVYRVLLILPYAVPSFISILIFKGL 339
Cdd:PRK10561 40 GLDNFVALFHDS----YYLDSFWTTIKFSTLVTVSGLLVSLFFAALVDY-VVRGSRFYQTLMLLPYAVAPAVAAVLWIFL 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131859 340 FNQSFGEINMMLsALFGVKpaWFSDPTTARTMLIIV--NTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKI 417
Cdd:PRK10561 115 FNPGRGLITHFL-AEFGYD--WNHAQNSGQAMFLVVfaSVWKQISYNFLFFFAALQSIPRSLVEAAAIDGAGPIRRFFKL 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131859 418 TLPlLIKPLTPLMIA---SFAFnFNNFVLIQLLTNGGPDRLGTTtpagytdllvnYTYRIAFEGGGGQDFGLAAAIATLI 494
Cdd:PRK10561 192 ALP-LIAPVSFFLLVvnlVYAF-FDTFPVIDAATSGGPVQATTT-----------LIYKIYREGFTGLDLSSSAAQSVVL 258
|
250
....*....|....*...
gi 16131859 495 FLLVGALAIVNLKATRMK 512
Cdd:PRK10561 259 MFLVIVLTVVQFRYVESK 276
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
281-498 |
5.07e-23 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 96.19 E-value: 5.07e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131859 281 FVWTVVFSLITVFLTVAVGMVLACLVQWEALRGKAVYRVLLILPYAVPSFISILIfkglfnqsfgeinmmLSALFGVKPA 360
Cdd:cd06261 1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLL---------------LVLLFGVLLG 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131859 361 WFSDPTTARTMLIIVNTWLGyPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNN 440
Cdd:cd06261 66 WGILPGLGLPALILALLLIA-PFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGE 144
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 16131859 441 FVLIQLLTNGGPDRLGTttpagytdllvnYTYRIaFEGGGGQDFGLAAAIATLIFLLV 498
Cdd:cd06261 145 FALVSFLGGGEAPGPGT------------GLLLI-FAILFPGDLGVAAAVALILLLLS 189
|
|
| LplB |
COG4209 |
ABC-type polysaccharide transport system, permease component [Carbohydrate transport and ... |
260-504 |
1.05e-20 |
|
ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443357 [Multi-domain] Cd Length: 316 Bit Score: 92.85 E-value: 1.05e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131859 260 GWKNFTRVFTDEGiqkpFLAIFVWTVVFSLITVFLTVAVGMVLA-CLVQWEALRGKAVYRVLLILPYavpsFISIL---- 334
Cdd:COG4209 71 GLKNFKFLFSSPD----FWRVLRNTLLISLLKLVFGFPLPIILAlLLNELRSKRFKKTVQTISYLPH----FLSWVvvag 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131859 335 IFKGLFNQSFGEINMMLSALFGVKPAWFSDPTTARTMLIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNF 414
Cdd:COG4209 143 IVYQFLSPDTGLVNQLLRALGGEPINFLTEPKYFRPIYVFSGIWKEAGWGSIIYLAAITGIDPELYEAAAIDGAGRWQQI 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131859 415 FKITLPLLIKPLTPLMIASFAFNFN-NFVLIQLLTNggpdrlgtttPAGY--TDLLVNYTYRIAFEGGggqDFGLAAAIA 491
Cdd:COG4209 223 WHITLPGIRPTIVILLILNIGNILNvGFEQIYLLYN----------PLNYstSDVIDTYVYRIGLQNG---DYSYATAVG 289
|
250
....*....|....*...
gi 16131859 492 TL-----IFLLVGALAIV 504
Cdd:COG4209 290 LFksvvgLILVLIANKIA 307
|
|
| PotC |
COG1177 |
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ... |
244-510 |
7.05e-20 |
|
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];
Pssm-ID: 440790 [Multi-domain] Cd Length: 262 Bit Score: 89.40 E-value: 7.05e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131859 244 GNWGDEKLSPGYTvttgWKNFTRVFTDEGiqkpFLAIFVWTVVFSLITVFLTVAVGMVLACLVQWEALRGKAVYRVLLIL 323
Cdd:COG1177 34 DSWFLTFPPEGFT----LRWYAELFSDPR----LLDALLNSLLIALLSTLLATVLGTPAALALARYRFRGRRLLLALLLL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131859 324 PYAVPSFI---SILIFkglfnqsFGEINMMLSaLFGVkpawfsdpttartmlIIVNTWLGYPYMMILCMGLLKAIPDDLY 400
Cdd:COG1177 106 PLVVPGIVlgvALLLL-------FSALGLSGG-LWGL---------------ILAHVVFTLPFVVLVVLARLQGFDPSLE 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131859 401 EASAMDGAGPFQNFFKITLPLlikpLTPLMIA----SFAFNFNNFVLIQLLTNGGPdrlgTTTPagyTDLLVNYTYRIAF 476
Cdd:COG1177 163 EAARDLGASPWQTFRRVTLPL----IAPGILAgallAFTLSFDEFVITLFLAGPGV----TTLP---VYIYSMIRRGISP 231
|
250 260 270
....*....|....*....|....*....|....
gi 16131859 477 EggggqdfglAAAIATLIFLLVGALAIVNLKATR 510
Cdd:COG1177 232 E---------INALSTLLILLSLLLLLLAERLRR 256
|
|
| PotB |
COG1176 |
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ... |
234-510 |
1.95e-19 |
|
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];
Pssm-ID: 440789 [Multi-domain] Cd Length: 287 Bit Score: 88.67 E-value: 1.95e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131859 234 IGFYQSITADGNWGDekLSPGYTvttgWKNFTRVFTDEGiqkpFLAIFVWTVVFSLITVFLTVAVGMVLACLVQWEALRG 313
Cdd:COG1176 32 LLLVYSFTTRDPYGG--VVPGFT----LENYARLFTDPL----YLKVLLRTLWIALLTTLICLLLGYPIAYFLARAPPRW 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131859 314 KAVYRVLLILPYAVPSFISILIFKGLFNQSfGEINMMLSALfGVKPAWFSdPTTARTMLIIVNTWLGYPYMMILCMGLLK 393
Cdd:COG1176 102 RNLLLLLVILPFWTSFLVRTYAWIVLLGRN-GLLNSLLLAL-GLIDEPLR-LLYTEFAVVIGLVYVYLPFMVLPLYAALE 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131859 394 AIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLtnGGPDR--LGTTtpagytdllvnyt 471
Cdd:COG1176 179 KIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALL--GGGKVlmIGNL------------- 243
|
250 260 270
....*....|....*....|....*....|....*....
gi 16131859 472 yrIAFEGGGGQDFGLAAAIATLIFLLVGALAIVNLKATR 510
Cdd:COG1176 244 --IYQQFLSALNWPLAAALAVVLLLIVLLVLLLYLRLLR 280
|
|
| FbpB |
COG1178 |
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]; |
251-504 |
6.88e-15 |
|
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440791 [Multi-domain] Cd Length: 538 Bit Score: 77.12 E-value: 6.88e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131859 251 LSPGYTVTTGWKNFTRVFTDEGIQKPFLaifvWTVVFSLITVFLTVAVGMVLACLVQWEALRGKAVYRVLLILPYAVPS- 329
Cdd:COG1178 314 LTKALDDNLTLDNYRFVLLDPSLLRALL----NSLLLALLAALLAVLLALLLAYLVRRRRGRLARLLDRLAMLPYAVPGi 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131859 330 FISIlifkGLFnqsfgeinmmlsaLFGVKPAWFSDPTTArTMLIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAG 409
Cdd:COG1178 390 VLGL----GLL-------------LLFNRPLPLLLYGTL-AILVLAYVVRFLPFALRSLEAALAQIDPSLEEAARSLGAS 451
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131859 410 PFQNFFKITLPLLIKPLtplmIASFAFNF----NNFVLIQLLTNGGpdrlgtttpagyTDLLVNYTYRIAFEGgggqDFG 485
Cdd:COG1178 452 PLRTLRRVTLPLLRPGL----LAAALLVFvtsmKELSATLLLRPPG------------FETLAVLIYQLASSG----RYG 511
|
250
....*....|....*....
gi 16131859 486 LAAAIATLIFLLVGALAIV 504
Cdd:COG1178 512 EAAALALLLVLVSLLPVLL 530
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
312-505 |
3.65e-14 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 70.79 E-value: 3.65e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131859 312 RGKAVYRVLLILPYAVPSFISILIFkglfnqsfgeinmmlsalfgVKPAWFSDPTTARTMLIIVNTWLGYPYMMILCMGL 391
Cdd:pfam00528 15 RLDRLLRPLIDLLQALPSFVLAILL--------------------VVIAILSILGHGILPAIILALLGWAGYARLIRRAA 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131859 392 LKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNGGPdrLGTTTPAGYTDLLVNYT 471
Cdd:pfam00528 75 LRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPG--LGLLLIEAILGYDYPEI 152
|
170 180 190
....*....|....*....|....*....|....
gi 16131859 472 YRIAfeggggqdFGLAAAIATLIFLLVGALAIVN 505
Cdd:pfam00528 153 QGPV--------LAAALILLLLNLLVDILQRLLD 178
|
|
| UgpE |
COG0395 |
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ... |
261-496 |
9.41e-13 |
|
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440164 [Multi-domain] Cd Length: 282 Bit Score: 68.58 E-value: 9.41e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131859 261 WKNFTRVFTDEgiqkPFLAIFVWTVVFSLITVFLTVAVGMVLA-CLVQWEaLRGKAVYRVLLILPYAVPsFISILIfkGL 339
Cdd:COG0395 60 LENYRAAFTDG----PFGRYLLNSLIVAVVSTVLSLLLSSLAAyALARFR-FRGRKLLFLLILATLMIP-GQVLLI--PL 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131859 340 FnQSFGEINMmLSALFGvkpawfsdpttartmLIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITL 419
Cdd:COG0395 132 Y-LLFRQLGL-LNTYWG---------------LILPYLAFGLPFGIFLLRQFFRSIPRELEEAARIDGASEFRIFWRIVL 194
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 16131859 420 PLLIKPLTPLMIASFAFNFNNFVLIQLLTNggpdrlgttTPAGYTdllvnYTYRIA-FEGGGGQDFGLAAAIATLIFL 496
Cdd:COG0395 195 PLSKPALATVAIFTFIGAWNDFLWPLILLT---------SPDLRT-----LPVGLAsFQGQYGTDWGLLMAAAVIATL 258
|
|
| Mo_ABC_porter |
TIGR01581 |
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively ... |
259-435 |
1.86e-10 |
|
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively weak homology compared to its neighbor clades, the molybdate (TIGR02141) and sulfate (TIGR00969) porters. Neighbor-Joining, PAM-distance phylogenetic trees support the separation of the clades in this way. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.
Pssm-ID: 130643 Cd Length: 225 Bit Score: 60.87 E-value: 1.86e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131859 259 TGWKNFTRVFTDEGIQKpflAIFVwTVVFSLITVFLTVAVGMVLACLVQWEALRGKAVYRVLLILPYAVPSFISILIFKG 338
Cdd:TIGR01581 5 LGGSHILSALTDPENIK---ALRL-SLATSLASLLLAVIIGIPTAYVLARVRFPLKKLLDTLLDLPMVLPPLVAGLALLL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131859 339 LFNqSFGEINMMLSALfGVKPAwFSdpttaRTMLIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKIT 418
Cdd:TIGR01581 81 LFG-RNGLLGPYLEAA-GIQVI-FS-----TLGVVLAQTFVASPYYVRVARSTFKSVDPRYEDVARSLGAGPLETFRKIT 152
|
170
....*....|....*..
gi 16131859 419 LPLLIKPLTPLMIASFA 435
Cdd:TIGR01581 153 LPMARPGLLAGLVLAWA 169
|
|
| MalG |
COG3833 |
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ... |
251-447 |
6.84e-09 |
|
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];
Pssm-ID: 443045 [Multi-domain] Cd Length: 282 Bit Score: 57.08 E-value: 6.84e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131859 251 LSPGYTVTTG--------WKNFTRVFTdegiQKPFLAIFVWTVVFSLITVFLTVAVGMVLAclvqwEAL-----RGKAVY 317
Cdd:COG3833 41 FNPGGSLYSSslipenftLENYKKLFT----ETPFLRWFLNSLIVAVVTAIISVFLAALAA-----YAFsrfrfKGRKAG 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131859 318 RVLLILPYAVPSFISI----LIFK--GLFNQSFGEINMMLSALfgvkpawfsdpttartmlIIVNTWLGYPYMmilcmgl 391
Cdd:COG3833 112 LLALLLLQMFPAFLALvalyLLLSalGLLNTLLGLILVYLGGA------------------IPFNTWLMKGYF------- 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 16131859 392 lKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLL 447
Cdd:COG3833 167 -DTIPKELDEAAKIDGASHFQIFFRIILPLAKPILAVVALLSFIGPWNDFILASVL 221
|
|
| PhnU2 |
TIGR03262 |
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ... |
260-501 |
2.64e-07 |
|
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274495 [Multi-domain] Cd Length: 546 Bit Score: 53.15 E-value: 2.64e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131859 260 GWKNFTRVFTDEGiqkpFLAIFVWTVVFSLITVFLTVAVGMVLACLVQWEALRGKAVYRVLLILPYAVPSFISILIFKGL 339
Cdd:TIGR03262 39 GLANFAEYFATPG----LLQSLGNSLTVSAIVTAIVVPLAFAFAYALTRSRIPGKGAFRLVALLPLLAPSLLPAISLIYL 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131859 340 F-NQSfgeinmMLSALFGVKPAWfsdpttARTMLIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKIT 418
Cdd:TIGR03262 115 FgNQG------LLKGLLGGFSIY------GFWGIVIGEVFYTFPHALMILVTALSLADGRLYEAARAMGASPWRTFFTVT 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16131859 419 LPLLIKPLTPLMIASFAFNFNNFvliqlltnGGPDRLGTTTPAGYTDLlvnYTYRIafeggGGQDFGLAAAIATLifLLV 498
Cdd:TIGR03262 183 LPGAKYGLISAAFVVFTLVITDF--------GVPKVIGGDYNVLATDI---YKQVI-----GQQNFPMGAVVGVL--LLL 244
|
...
gi 16131859 499 GAL 501
Cdd:TIGR03262 245 PAL 247
|
|
| PRK10973 |
PRK10973 |
sn-glycerol-3-phosphate ABC transporter permease UgpE; |
395-458 |
8.24e-04 |
|
sn-glycerol-3-phosphate ABC transporter permease UgpE;
Pssm-ID: 182875 [Multi-domain] Cd Length: 281 Bit Score: 41.26 E-value: 8.24e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 16131859 395 IPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNGGpdRLGTT 458
Cdd:PRK10973 169 LPDELVEAARIDGASPMRFFWDIVLPLSKTNLAALFVITFIYGWNQYLWPLLIITDV--SLGTA 230
|
|
| TM_PBP2_N |
pfam16296 |
N-terminal of TM subunit in PBP-dependent ABC transporters; This family mainly consists of ... |
78-144 |
4.39e-03 |
|
N-terminal of TM subunit in PBP-dependent ABC transporters; This family mainly consists of Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs, such as Binding-protein-dependent transport systems inner membrane component and Maltose transport permease MalF. It is around 580 residues in length and is mainly found in various species, such as Thermotoga, Dictyoglomus, Thermosipho, Fervidobacterium, Mesotoga and so on. The function of this family is unknown.
Pssm-ID: 435260 Cd Length: 79 Bit Score: 36.17 E-value: 4.39e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 16131859 78 FVLFPLVCTIAIAFTNYSSTNQLTFERAQEVLLDRSWQ---AGKTYNFGL----YPAGDEWQLALSDGETGKNY 144
Cdd:pfam16296 6 FQVFPVLYTASTAFTNYGDGHRGTKEQAIAAIQASSVKrvpGSPEYALTVatkgSPTTGDLVFLLTDPDTGKVY 79
|
|
| malG |
PRK10998 |
maltose ABC transporter permease MalG; |
390-434 |
9.45e-03 |
|
maltose ABC transporter permease MalG;
Pssm-ID: 182891 Cd Length: 296 Bit Score: 38.15 E-value: 9.45e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 16131859 390 GLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASF 434
Cdd:PRK10998 179 GYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSF 223
|
|
| |
