|
Name |
Accession |
Description |
Interval |
E-value |
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
4-378 |
0e+00 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 781.05 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 4 SKKLNNQPRSLSPLVLLSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITH 83
Cdd:PRK09452 1 SKKLNKQPSSLSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 84 VPAENRYVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVV 163
Cdd:PRK09452 81 VPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 164 NKPRLLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYEEPKNLF 243
Cdd:PRK09452 161 NKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPKNLF 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 244 VAGFIGEINRFDATVIERLDEQRVRASVEGRECNIYVNFAVEPGQKLNVLLRPEDLRVEEINDDNHIEGLIGYVRERNYK 323
Cdd:PRK09452 241 VARFIGEINIFDATVIERLDEQRVRANVEGRECNIYVNFAVEPGQKLHVLLRPEDLRVEEINDDEHAEGLIGYVRERNYK 320
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 16764581 324 GMTLESVVELENGKMVMVSEFFNEDDPDFDHSLDQKMAISWVESWEVVLADEEHK 378
Cdd:PRK09452 321 GMTLDSVVELENGKMVMVSEFFNEDDPDFDHSLGQKVAVTWVEGWEVVLADEEHK 375
|
|
| potA |
TIGR01187 |
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine ... |
48-372 |
0e+00 |
|
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 162242 [Multi-domain] Cd Length: 325 Bit Score: 561.34 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 48 LLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAENRYVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEIAPR 127
Cdd:TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 128 VTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHD 207
Cdd:TIGR01187 81 VLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 208 QEEALTMSDRIVVMRNGVIEQDGTPREIYEEPKNLFVAGFIGEINRFDATVIERLDEQRVRASVEGRECNIYVNFAVEPG 287
Cdd:TIGR01187 161 QEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEPANLFVARFIGEINVFEATVIERKSEQVVLAGVEGRRCDIYTDVPVEKD 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 288 QKLNVLLRPEDLRVEEINDDNHIEGLIGYVRERNYKGMTLESVVELENGKMVMVSEFFNEDDPDFDHSLDQKMAISWVES 367
Cdd:TIGR01187 241 QPLHVVLRPEKIVIEEEDEANSSNAIIGHVIDITYLGMTLEVHVRLETGQKVLVSEFFNEDDPHMSPSIGDRVGLTWHPG 320
|
....*
gi 16764581 368 WEVVL 372
Cdd:TIGR01187 321 SEVVL 325
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
15-374 |
0e+00 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 530.06 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 15 SPLVLLSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAENRYVNTV 94
Cdd:COG3842 3 MPALELENVSKRYGDVTALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFETPDSGRILLDGRDVTGLPPEKRNVGMV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 95 FQSYALFPHMTVFENVAFGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDES 174
Cdd:COG3842 83 FQDYALFPHLTVAENVAFGLRMRGVPKAEIRARVAELLELVGLEGLADRYPHQLSGGQQQRVALARALAPEPRVLLLDEP 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 175 LSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYEEPKNLFVAGFIGEINRF 254
Cdd:COG3842 163 LSALDAKLREEMREELRRLQRELGITFIYVTHDQEEALALADRIAVMNDGRIEQVGTPEEIYERPATRFVADFIGEANLL 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 255 DATVIERLDEqrvRASVEGRECNIYVNFAVEPGQKLNVLLRPEDLRVEEINDDNHIEgliGYVRERNYKGMTLESVVELE 334
Cdd:COG3842 243 PGTVLGDEGG---GVRTGGRTLEVPADAGLAAGGPVTVAIRPEDIRLSPEGPENGLP---GTVEDVVFLGSHVRYRVRLG 316
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 16764581 335 NGKMVMVSEFFNEDDPdfdHSLDQKMAISWVESWEVVLAD 374
Cdd:COG3842 317 DGQELVVRVPNRAALP---LEPGDRVGLSWDPEDVVVLPA 353
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
18-317 |
4.92e-153 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 435.27 E-value: 4.92e-153
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 18 VLLSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAENRYVNTVFQS 97
Cdd:COG3839 4 LELENVSKSYGGVEALKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGLEDPTSGEILIGGRDVTDLPPKDRNIAMVFQS 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 98 YALFPHMTVFENVAFGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSA 177
Cdd:COG3839 84 YALYPHMTVYENIAFPLKLRKVPKAEIDRRVREAAELLGLEDLLDRKPKQLSGGQRQRVALGRALVREPKVFLLDEPLSN 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 178 LDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYEEPKNLFVAGFIGE--INRFD 255
Cdd:COG3839 164 LDAKLRVEMRAEIKRLHRRLGTTTIYVTHDQVEAMTLADRIAVMNDGRIQQVGTPEELYDRPANLFVAGFIGSppMNLLP 243
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 16764581 256 ATVIE---RLDEQRVRASVEGrecniyvnfAVEPGQKLNVLLRPEDLRVEEiNDDNHIEGLIGYV 317
Cdd:COG3839 244 GTVEGggvRLGGVRLPLPAAL---------AAAAGGEVTLGIRPEHLRLAD-EGDGGLEATVEVV 298
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
18-249 |
7.17e-147 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 414.71 E-value: 7.17e-147
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 18 VLLSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAENRYVNTVFQS 97
Cdd:cd03300 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 98 YALFPHMTVFENVAFGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSA 177
Cdd:cd03300 81 YALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGA 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 16764581 178 LDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYEEPKNLFVAGFIG 249
Cdd:cd03300 161 LDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEEPANRFVADFIG 232
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
20-320 |
5.32e-133 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 384.11 E-value: 5.32e-133
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 20 LSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDI-THVPAENRYVNTVFQSY 98
Cdd:COG1118 5 VRNISKRFGSFTLLDDVSLEIASGELVALLGPSGSGKTTLLRIIAGLETPDSGRIVLNGRDLfTNLPPRERRVGFVFQHY 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 99 ALFPHMTVFENVAFGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSAL 178
Cdd:COG1118 85 ALFPHMTVAENIAFGLRVRPPSKAEIRARVEELLELVQLEGLADRYPSQLSGGQRQRVALARALAVEPEVLLLDEPFGAL 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 179 DYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYEEPKNLFVAGFIGEINRFDATV 258
Cdd:COG1118 165 DAKVRKELRRWLRRLHDELGGTTVFVTHDQEEALELADRVVVMNQGRIEQVGTPDEVYDRPATPFVARFLGCVNVLRGRV 244
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 16764581 259 IerldEQRVRASvegrECNIYVNFAVEPGQKLnVLLRPEDLRV-EEINDDNHIEGLIGYVRER 320
Cdd:COG1118 245 I----GGQLEAD----GLTLPVAEPLPDGPAV-AGVRPHDIEVsREPEGENTFPATVARVSEL 298
|
|
| PhnT2 |
TIGR03265 |
putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein; This ABC transporter ... |
14-335 |
2.74e-122 |
|
putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein; This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274496 [Multi-domain] Cd Length: 353 Bit Score: 357.04 E-value: 2.74e-122
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 14 LSPLVLLSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAENRYVNT 93
Cdd:TIGR03265 1 SSPYLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 94 VFQSYALFPHMTVFENVAFGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDE 173
Cdd:TIGR03265 81 VFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 174 SLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYEEPKNLFVAGFIGEINR 253
Cdd:TIGR03265 161 PLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPATPFVADFVGEVNW 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 254 FDAtviERLDEQRVRASVEGRECNiyvNFAVEPGQKLNVLLRPEDLRVEEINDDNHieGLIGYVRERNYKGMTLESVVEL 333
Cdd:TIGR03265 241 LPG---TRGGGSRARVGGLTLACA---PGLAQPGASVRLAVRPEDIRVSPAGNAAN--LLLARVEDMEFLGAFYRLRLRL 312
|
..
gi 16764581 334 EN 335
Cdd:TIGR03265 313 EG 314
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
18-230 |
8.10e-118 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 340.27 E-value: 8.10e-118
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 18 VLLSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAENRYVNTVFQS 97
Cdd:cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 98 YALFPHMTVFENVAFGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSA 177
Cdd:cd03259 81 YALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSA 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 16764581 178 LDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDG 230
Cdd:cd03259 161 LDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
20-315 |
5.19e-114 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 336.05 E-value: 5.19e-114
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 20 LSGISKSFDGK-EVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHV-PAEnRYVNTVFQS 97
Cdd:PRK11650 6 LQAVRKSYDGKtQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELePAD-RDIAMVFQN 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 98 YALFPHMTVFENVAFGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSA 177
Cdd:PRK11650 85 YALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSN 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 178 LDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYEEPKNLFVAGFIGE--INRFD 255
Cdd:PRK11650 165 LDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPASTFVASFIGSpaMNLLD 244
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 16764581 256 ATVieRLDEQRVRASvEGRECNIYVNFAVEPGQKLNVLLRPEDLR--------------VEEINDDNHIEGLIG 315
Cdd:PRK11650 245 GRV--SADGAAFELA-GGIALPLGGGYRQYAGRKLTLGIRPEHIAlssaeggvpltvdtVELLGADNLAHGRWG 315
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
8-339 |
5.09e-110 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 326.79 E-value: 5.09e-110
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 8 NNQPRSLSPLVLLSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAE 87
Cdd:PRK11607 10 AKTRKALTPLLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPY 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 88 NRYVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPR 167
Cdd:PRK11607 90 QRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPK 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 168 LLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYEEPKNLFVAGF 247
Cdd:PRK11607 170 LLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRYSAEF 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 248 IGEINRFDATVIERLDEQRVRASvEGRECNIYVN--FAVEPGQKLNVLLRPEDLRVEEINDDNHIEGLIGYVRERNYKGM 325
Cdd:PRK11607 250 IGSVNVFEGVLKERQEDGLVIDS-PGLVHPLKVDadASVVDNVPVHVALRPEKIMLCEEPPADGCNFAVGEVIHIAYLGD 328
|
330
....*....|....
gi 16764581 326 TLESVVELENGKMV 339
Cdd:PRK11607 329 LSIYHVRLKSGQMI 342
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
18-250 |
5.00e-108 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 316.59 E-value: 5.00e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 18 VLLSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAENRYVNTVFQS 97
Cdd:cd03296 3 IEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQH 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 98 YALFPHMTVFENVAFGLRMQK----TPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDE 173
Cdd:cd03296 83 YALFRHMTVFDNVAFGLRVKPrserPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDE 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 16764581 174 SLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYEEPKNLFVAGFIGE 250
Cdd:cd03296 163 PFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDHPASPFVYSFLGE 239
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
18-230 |
1.97e-106 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 311.50 E-value: 1.97e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 18 VLLSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAENRYVNTVFQS 97
Cdd:cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 98 YALFPHMTVFENVAFGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSA 177
Cdd:cd03301 81 YALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSN 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 16764581 178 LDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDG 230
Cdd:cd03301 161 LDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
18-257 |
1.69e-104 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 311.65 E-value: 1.69e-104
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 18 VLLSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAENRYVNTVFQS 97
Cdd:PRK11432 7 VVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQS 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 98 YALFPHMTVFENVAFGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSA 177
Cdd:PRK11432 87 YALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSN 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 178 LDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYEEPKNLFVAGFIGEINRFDAT 257
Cdd:PRK11432 167 LDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPASRFMASFMGDANIFPAT 246
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
20-258 |
5.86e-102 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 305.47 E-value: 5.86e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 20 LSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAENRYVNTVFQSYA 99
Cdd:PRK10851 5 IANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYA 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 100 LFPHMTVFENVAFGLRM----QKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESL 175
Cdd:PRK10851 85 LFRHMTVFDNIAFGLTVlprrERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPF 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 176 SALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYEEPKNLFVAGFIGEINRFD 255
Cdd:PRK10851 165 GALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPATRFVLEFMGEVNRLQ 244
|
...
gi 16764581 256 ATV 258
Cdd:PRK10851 245 GTI 247
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
16-224 |
8.54e-101 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 298.93 E-value: 8.54e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 16 PLVLLSGISKSF----DGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAENRYV 91
Cdd:COG1116 6 PALELRGVSKRFptggGGVTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKPTSGEVLVDGKPVTGPGPDRGVV 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 92 ntvFQSYALFPHMTVFENVAFGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLL 171
Cdd:COG1116 86 ---FQEPALLPWLTVLDNVALGLELRGVPKAERRERARELLELVGLAGFEDAYPHQLSGGMRQRVAIARALANDPEVLLM 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 16764581 172 DESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNG 224
Cdd:COG1116 163 DEPFGALDALTRERLQDELLRLWQETGKTVLFVTHDVDEAVFLADRVVVLSAR 215
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
18-306 |
1.32e-97 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 294.63 E-value: 1.32e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 18 VLLSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAENRYVNTVFQS 97
Cdd:PRK11000 4 VTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQS 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 98 YALFPHMTVFENVAFGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSA 177
Cdd:PRK11000 84 YALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSN 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 178 LDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYEEPKNLFVAGFIG--EIN--- 252
Cdd:PRK11000 164 LDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPANRFVAGFIGspKMNflp 243
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 253 -RFDATVIERL-----DEQRVRASVEGRecniyvnfAVEPGQKLNVLLRPEDLRVEEIND 306
Cdd:PRK11000 244 vKVTATAIEQVqvelpNRQQVWLPVEGR--------GVQVGANMSLGIRPEHLLPSDIAD 295
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
18-239 |
1.46e-94 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 281.67 E-value: 1.46e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 18 VLLSGISKSFDGK----EVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAENRYVnt 93
Cdd:cd03293 1 LEVRNVSKTYGGGggavTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYV-- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 94 vFQSYALFPHMTVFENVAFGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDE 173
Cdd:cd03293 79 -FQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDE 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 16764581 174 SLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNgvieQDGTPREIYEEP 239
Cdd:cd03293 158 PFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSA----RPGRIVAEVEVD 219
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
26-249 |
3.86e-86 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 260.73 E-value: 3.86e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 26 SFDGKE-VISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAENRYVNTVFQSYALFPHM 104
Cdd:cd03299 7 SKDWKEfKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHM 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 105 TVFENVAFGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALDYKLRK 184
Cdd:cd03299 87 TVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKE 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 16764581 185 QMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYEEPKNLFVAGFIG 249
Cdd:cd03299 167 KLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKPKNEFVAEFLG 231
|
|
| ProV |
COG4175 |
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and ... |
38-333 |
2.34e-83 |
|
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443334 [Multi-domain] Cd Length: 389 Bit Score: 258.88 E-value: 2.34e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 38 LTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAE------NRYVNTVFQSYALFPHMTVFENVA 111
Cdd:COG4175 48 FDVEEGEIFVIMGLSGSGKSTLVRCLNRLIEPTAGEVLIDGEDITKLSKKelrelrRKKMSMVFQHFALLPHRTVLENVA 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 112 FGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALDYKLRKQMQNELK 191
Cdd:COG4175 128 FGLEIQGVPKAERRERAREALELVGLAGWEDSYPDELSGGMQQRVGLARALATDPDILLMDEAFSALDPLIRREMQDELL 207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 192 ALQRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYEEPKNLFVAGFIGEINR----------FDATVIER 261
Cdd:COG4175 208 ELQAKLKKTIVFITHDLDEALRLGDRIAIMKDGRIVQIGTPEEILTNPANDYVADFVEDVDRskvltagsvmRPPEAVVS 287
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 16764581 262 LDEQRVRASVEGRECNIYVNFAVEPGQKLNVLLRPEDLrVEEINDDNHIEGLIGYVRERNYKGMTLESVVEL 333
Cdd:COG4175 288 EKDGPRVALRRMREEGISSLYVVDRDRRLLGVVTADDA-LEAVKGEKDLEEILLTDVPTVSPDTPLRDLLPL 358
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
20-250 |
5.01e-82 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 250.30 E-value: 5.01e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 20 LSGISKSF-DGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAEN--RYVNTVFQ 96
Cdd:cd03295 3 FENVTKRYgGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVElrRKIGYVIQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 97 SYALFPHMTVFENVAFGLRMQKTPAAEIAPRVTDALRMVQLE--EFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDES 174
Cdd:cd03295 83 QIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDpaEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEP 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 16764581 175 LSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYEEPKNLFVAGFIGE 250
Cdd:cd03295 163 FGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSPANDFVAEFVGA 238
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
15-229 |
1.76e-81 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 248.42 E-value: 1.76e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 15 SPLVLLSGISKSF-DGKE---VISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAE--- 87
Cdd:COG1136 2 SPLLELRNLTKSYgTGEGevtALRGVSLSIEAGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVLIDGQDISSLSERela 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 88 ---NRYVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVN 164
Cdd:COG1136 82 rlrRRHIGFVFQFFNLLPELTALENVALPLLLAGVSRKERRERARELLERVGLGDRLDHRPSQLSGGQQQRVAIARALVN 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 16764581 165 KPRLLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDqEEALTMSDRIVVMRNGVIEQD 229
Cdd:COG1136 162 RPKLILADEPTGNLDSKTGEEVLELLRELNRELGTTIVMVTHD-PELAARADRVIRLRDGRIVSD 225
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
37-253 |
1.36e-80 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 247.56 E-value: 1.36e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 37 DLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAEN------RYVNTVFQSYALFPHMTVFENV 110
Cdd:cd03294 44 SLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKElrelrrKKISMVFQSFALLPHRTVLENV 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 111 AFGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALDYKLRKQMQNEL 190
Cdd:cd03294 124 AFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDEL 203
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 16764581 191 KALQRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYEEPKNLFVAGFIGEINR 253
Cdd:cd03294 204 LRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNPANDYVREFFRGVDR 266
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
15-240 |
1.24e-78 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 250.59 E-value: 1.24e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 15 SPLVLLSGISKSFDGKE-----VISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAEN- 88
Cdd:COG1123 258 EPLLEVRNLSKRYPVRGkggvrAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRPTSGSILFDGKDLTKLSRRSl 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 89 ----RYVNTVFQ--SYALFPHMTVFENVAFGLRMQKT-PAAEIAPRVTDALRMVQL-EEFAQRKPHQLSGGQQQRVAIAR 160
Cdd:COG1123 338 relrRRVQMVFQdpYSSLNPRMTVGDIIAEPLRLHGLlSRAERRERVAELLERVGLpPDLADRYPHELSGGQRQRVAIAR 417
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 161 AVVNKPRLLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYEEPK 240
Cdd:COG1123 418 ALALEPKLLILDEPTSALDVSVQAQILNLLRDLQRELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEDGPTEEVFANPQ 497
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
16-235 |
4.56e-77 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 237.57 E-value: 4.56e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 16 PLVLLSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAENRY----- 90
Cdd:COG1127 4 PMIEVRNLTKSFGDRVVLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQDITGLSEKELYelrrr 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 91 VNTVFQSYALFPHMTVFENVAFGLRMQKT-PAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLL 169
Cdd:COG1127 84 IGMLFQGGALFDSLTVFENVAFPLREHTDlSEAEIRELVLEKLELVGLPGAADKMPSELSGGMRKRVALARALALDPEIL 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 16764581 170 LLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREI 235
Cdd:COG1127 164 LYDEPTAGLDPITSAVIDELIRELRDELGLTSVVVTHDLDSAFAIADRVAVLADGKIIAEGTPEEL 229
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
20-241 |
1.95e-75 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 233.35 E-value: 1.95e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 20 LSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAENRYVNT----VF 95
Cdd:COG1126 4 IENLHKSFGDLEVLKGISLDVEKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTITVDGEDLTDSKKDINKLRRkvgmVF 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 96 QSYALFPHMTVFENVAFGLRM-QKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDES 174
Cdd:COG1126 84 QQFNLFPHLTVLENVTLAPIKvKKMSKAEAEERAMELLERVGLADKADAYPAQLSGGQQQRVAIARALAMEPKVMLFDEP 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 175 LSALDyklrKQMQNELKALQRKL---GITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYEEPKN 241
Cdd:COG1126 164 TSALD----PELVGEVLDVMRDLakeGMTMVVVTHEMGFAREVADRVVFMDGGRIVEEGPPEEFFENPQH 229
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
20-226 |
2.10e-75 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 232.77 E-value: 2.10e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 20 LSGISKSFDG----KEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAE------NR 89
Cdd:cd03255 3 LKNLSKTYGGggekVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKelaafrRR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 90 YVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLL 169
Cdd:cd03255 83 HIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKII 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 16764581 170 LLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALtMSDRIVVMRNGVI 226
Cdd:cd03255 163 LADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDGKI 218
|
|
| proV |
TIGR01186 |
glycine betaine/L-proline transport ATP binding subunit; This model describes the glycine ... |
25-270 |
1.96e-74 |
|
glycine betaine/L-proline transport ATP binding subunit; This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 130254 [Multi-domain] Cd Length: 363 Bit Score: 235.13 E-value: 1.96e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 25 KSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHV-PAENRYVN-----TVFQSY 98
Cdd:TIGR01186 1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQsPVELREVRrkkigMVFQQF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 99 ALFPHMTVFENVAFGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSAL 178
Cdd:TIGR01186 81 ALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSAL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 179 DYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYEEPKNLFVAGFIGE---INRFD 255
Cdd:TIGR01186 161 DPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYVEEFIGKvdlSQVFD 240
|
250
....*....|....*.
gi 16764581 256 ATVIE-RLDEQRVRAS 270
Cdd:TIGR01186 241 AERIAqRMNTGPITKT 256
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
20-221 |
1.68e-72 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 226.67 E-value: 1.68e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 20 LSGISKSFDG----KEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHvPAENRYVntVF 95
Cdd:COG4525 6 VRHVSVRYPGggqpQPALQDVSLTIESGEFVVALGASGCGKTTLLNLIAGFLAPSSGEITLDGVPVTG-PGADRGV--VF 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 96 QSYALFPHMTVFENVAFGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESL 175
Cdd:COG4525 83 QKDALLPWLNVLDNVAFGLRLRGVPKAERRARAEELLALVGLADFARRRIWQLSGGMRQRVGIARALAADPRFLLMDEPF 162
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 16764581 176 SALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVM 221
Cdd:COG4525 163 GALDALTREQMQELLLDVWQRTGKGVFLITHSVEEALFLATRLVVM 208
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
20-224 |
2.46e-72 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 223.22 E-value: 2.46e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 20 LSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDIT----HVPAENRYVNTVF 95
Cdd:cd03229 3 LKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTdledELPPLRRRIGMVF 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 96 QSYALFPHMTVFENVAFGLrmqktpaaeiaprvtdalrmvqleefaqrkphqlSGGQQQRVAIARAVVNKPRLLLLDESL 175
Cdd:cd03229 83 QDFALFPHLTVLENIALGL----------------------------------SGGQQQRVALARALAMDPDVLLLDEPT 128
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 16764581 176 SALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNG 224
Cdd:cd03229 129 SALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDG 177
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
20-241 |
1.93e-71 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 223.53 E-value: 1.93e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 20 LSGISKSF----DGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVP--AENRYVNT 93
Cdd:COG1124 4 VRNLSVSYgqggRRVPVLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLERPWSGEVTFDGRPVTRRRrkAFRRRVQM 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 94 VFQSY--ALFPHMTVFENVAFGLRMQKTPaaEIAPRVTDALRMVQL-EEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLL 170
Cdd:COG1124 84 VFQDPyaSLHPRHTVDRILAEPLRIHGLP--DREERIAELLEQVGLpPSFLDRYPHQLSGGQRQRVAIARALILEPELLL 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 16764581 171 LDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYEEPKN 241
Cdd:COG1124 162 LDEPTSALDVSVQAEILNLLKDLREERGLTYLFVSHDLAVVAHLCDRVAVMQNGRIVEELTVADLLAGPKH 232
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
19-230 |
1.97e-71 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 222.17 E-value: 1.97e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 19 LLSGISKSFDGKEVisQLDLTINnGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLD-------NQDItHVPAENRYV 91
Cdd:cd03297 2 LCVDIEKRLPDFTL--KIDFDLN-EEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNgtvlfdsRKKI-NLPPQQRKI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 92 NTVFQSYALFPHMTVFENVAFGLRmqKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLL 171
Cdd:cd03297 78 GLVFQQYALFPHLNVRENLAFGLK--RKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLL 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 16764581 172 DESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDG 230
Cdd:cd03297 156 DEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
37-250 |
2.08e-71 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 222.71 E-value: 2.08e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 37 DLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAENRYVNTVFQSYALFPHMTVFENVAFGLRm 116
Cdd:COG3840 19 DLTIAAGERVAILGPSGAGKSTLLNLIAGFLPPDSGRILWNGQDLTALPPAERPVSMLFQENNLFPHLTVAQNIGLGLR- 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 117 qktP-----AAEIApRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVV-NKPrLLLLDESLSALDYKLRKQMQNEL 190
Cdd:COG3840 98 ---PglkltAEQRA-QVEQALERVGLAGLLDRLPGQLSGGQRQRVALARCLVrKRP-ILLLDEPFSALDPALRQEMLDLV 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 191 KALQRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYEEPKNLFVAGFIGE 250
Cdd:COG3840 173 DELCRERGLTVLMVTHDPEDAARIADRVLLVADGRIAADGPTAALLDGEPPPALAAYLGI 232
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
28-242 |
5.01e-71 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 221.82 E-value: 5.01e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 28 DGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAEN--RYVNTVFQS--YALFpH 103
Cdd:COG1122 12 GGTPALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGKDITKKNLRElrRKVGLVFQNpdDQLF-A 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 104 MTVFENVAFGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALDYKLR 183
Cdd:COG1122 91 PTVEEDVAFGPENLGLPREEIRERVEEALELVGLEHLADRPPHELSGGQKQRVAIAGVLAMEPEVLVLDEPTAGLDPRGR 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 16764581 184 KQMQNELKALQRKlGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYEEPKNL 242
Cdd:COG1122 171 RELLELLKRLNKE-GKTVIIVTHDLDLVAELADRVIVLDDGRIVADGTPREVFSDYELL 228
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
20-235 |
1.02e-69 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 218.53 E-value: 1.02e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 20 LSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAENRY-----VNTV 94
Cdd:cd03261 3 LRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYrlrrrMGML 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 95 FQSYALFPHMTVFENVAFGLRMQ-KTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDE 173
Cdd:cd03261 83 FQSGALFDSLTVFENVAFPLREHtRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDE 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 16764581 174 SLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREI 235
Cdd:cd03261 163 PTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEEL 224
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
20-230 |
1.06e-68 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 215.69 E-value: 1.06e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 20 LSGISKSF-DGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAEN-----RYVNT 93
Cdd:COG2884 4 FENVSKRYpGGREALSDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGEERPTSGQVLVNGQDLSRLKRREipylrRRIGV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 94 VFQSYALFPHMTVFENVAFGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDE 173
Cdd:COG2884 84 VFQDFRLLPDRTVYENVALPLRVTGKSRKEIRRRVREVLDLVGLSDKAKALPHELSGGEQQRVAIARALVNRPELLLADE 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 16764581 174 SLSALDYKLRKQMQNELKALQRkLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDG 230
Cdd:COG2884 164 PTGNLDPETSWEIMELLEEINR-RGTTVLIATHDLELVDRMPKRVLELEDGRLVRDE 219
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
35-309 |
3.12e-67 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 216.51 E-value: 3.12e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 35 QLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDN---QD---ITHVPAENRYVNTVFQSYALFPHMTVFE 108
Cdd:COG4148 17 DVDFTLPGRGVTALFGPSGSGKTTLLRAIAGLERPDSGRIRLGGevlQDsarGIFLPPHRRRIGYVFQEARLFPHLSVRG 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 109 NVAFGLRmqKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALDYKLRKQMQN 188
Cdd:COG4148 97 NLLYGRK--RAPRAERRISFDEVVELLGIGHLLDRRPATLSGGERQRVAIGRALLSSPRLLLMDEPLAALDLARKAEILP 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 189 ELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYEEPKNLFVAGFIGEINRFDATVIERLDEQR-V 267
Cdd:COG4148 175 YLERLRDELDIPILYVSHSLDEVARLADHVVLLEQGRVVASGPLAEVLSRPDLLPLAGGEEAGSVLEATVAAHDPDYGlT 254
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 16764581 268 RASVEGREcnIYVNF-AVEPGQKL-------NVLL---RPEDL--------RVEEINDDNH 309
Cdd:COG4148 255 RLALGGGR--LWVPRlDLPPGTRVrvrirarDVSLalePPEGSsilnilpgRVVEIEPADG 313
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
20-224 |
1.73e-64 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 204.24 E-value: 1.73e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 20 LSGISKSFDGKE--VISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAENRY--VNTVF 95
Cdd:cd03225 2 LKNLSFSYPDGArpALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRrkVGLVF 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 96 QsyalFP-HM----TVFENVAFGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLL 170
Cdd:cd03225 82 Q----NPdDQffgpTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILL 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 16764581 171 LDESLSALDYKLRKQMQNELKALQRKlGITFVFVTHDQEEALTMSDRIVVMRNG 224
Cdd:cd03225 158 LDEPTAGLDPAGRRELLELLKKLKAE-GKTIIIVTHDLDLLLELADRVIVLEDG 210
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
20-226 |
2.01e-64 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 204.30 E-value: 2.01e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 20 LSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITH----VPAENRYVNTVF 95
Cdd:cd03262 3 IKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDdkknINELRQKVGMVF 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 96 QSYALFPHMTVFENVAFGLR-MQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDES 174
Cdd:cd03262 83 QQFNLFPHLTVLENITLAPIkVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEP 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 16764581 175 LSALDYKLRKQMQNELKALQRKlGITFVFVTHDQEEALTMSDRIVVMRNGVI 226
Cdd:cd03262 163 TSALDPELVGEVLDVMKDLAEE-GMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
20-228 |
2.77e-64 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 204.28 E-value: 2.77e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 20 LSGISKSFDGK----EVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAENR-----Y 90
Cdd:cd03257 4 VKNLSVSFPTGggsvKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRkirrkE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 91 VNTVFQSY--ALFPHMTVFENVAFGLRMQK--TPAAEIAPRVTDALRMVQL-EEFAQRKPHQLSGGQQQRVAIARAVVNK 165
Cdd:cd03257 84 IQMVFQDPmsSLNPRMTIGEQIAEPLRIHGklSKKEARKEAVLLLLVGVGLpEEVLNRYPHELSGGQRQRVAIARALALN 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 16764581 166 PRLLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNG-VIEQ 228
Cdd:cd03257 164 PKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGkIVEE 227
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
20-238 |
2.12e-63 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 202.60 E-value: 2.12e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 20 LSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAE-NRYVNTVFQSY 98
Cdd:COG1131 3 VRGLTKRYGDKTALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGEDVARDPAEvRRRIGYVPQEP 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 99 ALFPHMTVFENVAFGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSAL 178
Cdd:COG1131 83 ALYPDLTVRENLRFFARLYGLPRKEARERIDELLELFGLTDAADRKVGTLSGGMKQRLGLALALLHDPELLILDEPTSGL 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 179 DYKLRKQMQNELKALQRKlGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYEE 238
Cdd:COG1131 163 DPEARRELWELLRELAAE-GKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGTPDELKAR 221
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
20-265 |
2.37e-63 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 205.70 E-value: 2.37e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 20 LSGISKSFDGK----EVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVP-----AENRY 90
Cdd:COG1135 4 LENLSKTFPTKggpvTALDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLLERPTSGSVLVDGVDLTALSerelrAARRK 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 91 VNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLL 170
Cdd:COG1135 84 IGMIFQHFNLLSSRTVAENVALPLEIAGVPKAEIRKRVAELLELVGLSDKADAYPSQLSGGQKQRVGIARALANNPKVLL 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 171 LDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDqeealtMS------DRIVVMRNGVIEQDGTPREIYEEPKNLFV 244
Cdd:COG1135 164 CDEATSALDPETTRSILDLLKDINRELGLTIVLITHE------MDvvrricDRVAVLENGRIVEQGPVLDVFANPQSELT 237
|
250 260
....*....|....*....|...
gi 16764581 245 AGFIGEINRFD--ATVIERLDEQ 265
Cdd:COG1135 238 RRFLPTVLNDElpEELLARLREA 260
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
20-235 |
4.36e-63 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 202.20 E-value: 4.36e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 20 LSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAEN--RYVNTVFQS 97
Cdd:COG1120 4 AENLSVGYGGRPVLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLDGRDLASLSRRElaRRIAYVPQE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 98 YALFPHMTVFENVAFG----LRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDE 173
Cdd:COG1120 84 PPAPFGLTVRELVALGryphLGLFGRPSAEDREAVEEALERTGLEHLADRPVDELSGGERQRVLIARALAQEPPLLLLDE 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 16764581 174 SLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREI 235
Cdd:COG1120 164 PTSHLDLAHQLEVLELLRRLARERGRTVVMVLHDLNLAARYADRLVLLKDGRIVAQGPPEEV 225
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
15-242 |
9.56e-63 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 208.99 E-value: 9.56e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 15 SPLVLLSGISKSFDG--KEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGL---ETVDAGHIMLDNQDITHVPAENR 89
Cdd:COG1123 2 TPLLEVRDLSVRYPGgdVPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLlphGGRISGEVLLDGRDLLELSEALR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 90 --YVNTVFQS--YALFPhMTVFENVAFGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNK 165
Cdd:COG1123 82 grRIGMVFQDpmTQLNP-VTVGDQIAEALENLGLSRAEARARVLELLEAVGLERRLDRYPHQLSGGQRQRVAIAMALALD 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 16764581 166 PRLLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYEEPKNL 242
Cdd:COG1123 161 PDLLIADEPTTALDVTTQAEILDLLRELQRERGTTVLLITHDLGVVAEIADRVVVMDDGRIVEDGPPEEILAAPQAL 237
|
|
| PhnC |
COG3638 |
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and ... |
16-238 |
5.83e-62 |
|
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 442855 [Multi-domain] Cd Length: 249 Bit Score: 199.13 E-value: 5.83e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 16 PLVLLSGISKSF-DGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAEN-----R 89
Cdd:COG3638 1 PMLELRNLSKRYpGGTPALDDVSLEIERGEFVALIGPSGAGKSTLLRCLNGLVEPTSGEILVDGQDVTALRGRAlrrlrR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 90 YVNTVFQSYALFPHMTVFENVAFG-----------LRMQktPAAEIApRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAI 158
Cdd:COG3638 81 RIGMIFQQFNLVPRLSVLTNVLAGrlgrtstwrslLGLF--PPEDRE-RALEALERVGLADKAYQRADQLSGGQQQRVAI 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 159 ARAVVNKPRLLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYEE 238
Cdd:COG3638 158 ARALVQEPKLILADEPVASLDPKTARQVMDLLRRIAREDGITVVVNLHQVDLARRYADRIIGLRDGRVVFDGPPAELTDA 237
|
|
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
16-240 |
9.01e-60 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 196.11 E-value: 9.01e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 16 PLVLLSGISKSFDGK--------EVISQLD---LTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHV 84
Cdd:COG4608 6 PLLEVRDLKKHFPVRgglfgrtvGVVKAVDgvsFDIRRGETLGLVGESGCGKSTLGRLLLRLEEPTSGEILFDGQDITGL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 85 PAEN-----RYVNTVFQ-SYA-LFPHMTVFENVAFGLRMQK-TPAAEIAPRVTDALRMVQL-EEFAQRKPHQLSGGQQQR 155
Cdd:COG4608 86 SGRElrplrRRMQMVFQdPYAsLNPRMTVGDIIAEPLRIHGlASKAERRERVAELLELVGLrPEHADRYPHEFSGGQRQR 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 156 VAIARAVVNKPRLLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDqeeaLTM----SDRIVVMRNGVIEQDGT 231
Cdd:COG4608 166 IGIARALALNPKLIVCDEPVSALDVSIQAQVLNLLEDLQDELGLTYLFISHD----LSVvrhiSDRVAVMYLGKIVEIAP 241
|
....*....
gi 16764581 232 PREIYEEPK 240
Cdd:COG4608 242 RDELYARPL 250
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
20-240 |
1.34e-59 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 192.41 E-value: 1.34e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 20 LSGISKSFDGK----EVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVP-----AENRY 90
Cdd:cd03258 4 LKNVSKVFGDTggkvTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSgkelrKARRR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 91 VNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLL 170
Cdd:cd03258 84 IGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLL 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 171 LDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYEEPK 240
Cdd:cd03258 164 CDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFANPQ 233
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
17-241 |
2.94e-58 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 189.53 E-value: 2.94e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 17 LVLLSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAENRYV----N 92
Cdd:PRK09493 1 MIEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIrqeaG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 93 TVFQSYALFPHMTVFENVAFG-LRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLL 171
Cdd:PRK09493 81 MVFQQFYLFPHLTALENVMFGpLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLF 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 172 DESLSALDYKLRKQMQNELKALQRKlGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYEEPKN 241
Cdd:PRK09493 161 DEPTSALDPELRHEVLKVMQDLAEE-GMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNPPS 229
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
16-233 |
1.06e-56 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 186.04 E-value: 1.06e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 16 PLvLLSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAENRYVntvF 95
Cdd:PRK11247 12 PL-LLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLM---F 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 96 QSYALFPHMTVFENVAFGLRMQKTPAAEiaprvtDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESL 175
Cdd:PRK11247 88 QDARLLPWKKVIDNVGLGLKGQWRDAAL------QALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPL 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 16764581 176 SALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGT---PR 233
Cdd:PRK11247 162 GALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTvdlPR 222
|
|
| ECF_ATPase_1 |
TIGR04520 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
20-242 |
1.24e-56 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the upstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275313 [Multi-domain] Cd Length: 268 Bit Score: 186.10 E-value: 1.24e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 20 LSGISKSFDGKE--VISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHvpAENRY-----VN 92
Cdd:TIGR04520 3 VENVSFSYPESEkpALKNVSLSIEKGEFVAIIGHNGSGKSTLAKLLNGLLLPTSGKVTVDGLDTLD--EENLWeirkkVG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 93 TVFQSyalfPH-----MTVFENVAFGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPR 167
Cdd:TIGR04520 81 MVFQN----PDnqfvgATVEDDVAFGLENLGVPREEMRKRVDEALKLVGMEDFRDREPHLLSGGQKQRVAIAGVLAMRPD 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 16764581 168 LLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALtMSDRIVVMRNGVIEQDGTPREIYEEPKNL 242
Cdd:TIGR04520 157 IIILDEATSMLDPKGRKEVLETIRKLNKEEGITVISITHDMEEAV-LADRVIVMNKGKIVAEGTPREIFSQVELL 230
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
20-238 |
1.81e-55 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 182.36 E-value: 1.81e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 20 LSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAE-NRYVNTVFQSY 98
Cdd:COG4555 4 VENLSKKYGKVPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGEDVRKEPREaRRQIGVLPDER 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 99 ALFPHMTVFENVAFGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSAL 178
Cdd:COG4555 84 GLYDRLTVRENIRYFAELYGLFDEELKKRIEELIELLGLEEFLDRRVGELSTGMKKKVALARALVHDPKVLLLDEPTNGL 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 179 DYKLRKQMQNELKALqRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYEE 238
Cdd:COG4555 164 DVMARRLLREILRAL-KKEGKTVLFSSHIMQEVEALCDRVVILHKGKVVAQGSLDELREE 222
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
28-237 |
1.84e-55 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 193.51 E-value: 1.84e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 28 DGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAEN--RYVNTVFQSYALFpHMT 105
Cdd:COG2274 486 DSPPVLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEPTSGRILIDGIDLRQIDPASlrRQIGVVLQDVFLF-SGT 564
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 106 VFENVAFGLrmqktPAAEIApRVTDALRMVQLEEFAQRKPH-----------QLSGGQQQRVAIARAVVNKPRLLLLDES 174
Cdd:COG2274 565 IRENITLGD-----PDATDE-EIIEAARLAGLHDFIEALPMgydtvvgeggsNLSGGQRQRLAIARALLRNPRILILDEA 638
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 16764581 175 LSALDYKLRKQMQNELKALQRklGITFVFVTHDqEEALTMSDRIVVMRNGVIEQDGTPREIYE 237
Cdd:COG2274 639 TSALDAETEAIILENLRRLLK--GRTVIIIAHR-LSTIRLADRIIVLDKGRIVEDGTHEELLA 698
|
|
| YnjD |
COG4136 |
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ... |
28-223 |
1.94e-55 |
|
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];
Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 181.14 E-value: 1.94e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 28 DGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGleTVDA-----GHIMLDNQDITHVPAENRYVNTVFQSYALFP 102
Cdd:COG4136 12 GGRPLLAPLSLTVAPGEILTLMGPSGSGKSTLLAAIAG--TLSPafsasGEVLLNGRRLTALPAEQRRIGILFQDDLLFP 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 103 HMTVFENVAFGLRmQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALDYKL 182
Cdd:COG4136 90 HLSVGENLAFALP-PTIGRAQRRARVEQALEEAGLAGFADRDPATLSGGQRARVALLRALLAEPRALLLDEPFSKLDAAL 168
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 16764581 183 RKQMQNELKALQRKLGITFVFVTHDQEEALTMSdRIVVMRN 223
Cdd:COG4136 169 RAQFREFVFEQIRQRGIPALLVTHDEEDAPAAG-RVLDLGN 208
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
20-235 |
1.95e-55 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 181.61 E-value: 1.95e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 20 LSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETV-----DAGHIMLDNQDI----THVPAENRY 90
Cdd:cd03260 3 LRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLipgapDEGEVLLDGKDIydldVDVLELRRR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 91 VNTVFQSYALFPhMTVFENVAFGLRMQKT-PAAEIAPRVTDALRMVQL-EEFAQR-KPHQLSGGQQQRVAIARAVVNKPR 167
Cdd:cd03260 83 VGMVFQKPNPFP-GSIYDNVAYGLRLHGIkLKEELDERVEEALRKAALwDEVKDRlHALGLSGGQQQRLCLARALANEPE 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 16764581 168 LLLLDESLSALDYKLRKQMQNELKALQRKlgITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREI 235
Cdd:cd03260 162 VLLLDEPTSALDPISTAKIEELIAELKKE--YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
20-224 |
2.13e-55 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 182.59 E-value: 2.13e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 20 LSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAEnRYVntVFQSYA 99
Cdd:PRK11248 4 ISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAE-RGV--VFQNEG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 100 LFPHMTVFENVAFGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALD 179
Cdd:PRK11248 81 LLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALD 160
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 16764581 180 YKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNG 224
Cdd:PRK11248 161 AFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPG 205
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
11-234 |
1.04e-54 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 179.94 E-value: 1.04e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 11 PRSLSPLVLLSGISKSFDGKE----VISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPA 86
Cdd:COG4181 2 SSSSAPIIELRGLTKTVGTGAgeltILKGISLEVEAGESVAIVGASGSGKSTLLGLLAGLDRPTSGTVRLAGQDLFALDE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 87 E------NRYVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEiaPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIAR 160
Cdd:COG4181 82 DararlrARHVGFVFQSFQLLPTLTALENVMLPLELAGRRDAR--ARARALLERVGLGHRLDHYPAQLSGGEQQRVALAR 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 16764581 161 AVVNKPRLLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALtMSDRIVVMRNGVIEQDGTPRE 234
Cdd:COG4181 160 AFATEPAILFADEPTGNLDAATGEQIIDLLFELNRERGTTLVLVTHDPALAA-RCDRVLRLRAGRLVEDTAATA 232
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
20-226 |
1.47e-54 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 178.86 E-value: 1.47e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 20 LSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAEN--RYVNTVFQS 97
Cdd:COG4619 3 LEGLSFRVGGKPILSPVSLTLEAGECVAITGPSGSGKSTLLRALADLDPPTSGEIYLDGKPLSAMPPPEwrRQVAYVPQE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 98 YALFPhMTVFENVAFGLRMQKTPAAEiaPRVTDALRMVQL-EEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLS 176
Cdd:COG4619 83 PALWG-GTVRDNLPFPFQLRERKFDR--ERALELLERLGLpPDILDKPVERLSGGERQRLALIRALLLQPDVLLLDEPTS 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 16764581 177 ALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNGVI 226
Cdd:COG4619 160 ALDPENTRRVEELLREYLAEEGRAVLWVSHDPEQIERVADRVLTLEAGRL 209
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
19-240 |
1.64e-54 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 182.18 E-value: 1.64e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 19 LLS--GISKSFDGKE----VISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLE---TVDAGHIMLDNQDITHVPAEN- 88
Cdd:COG0444 1 LLEvrNLKVYFPTRRgvvkAVDGVSFDVRRGETLGLVGESGSGKSTLARAILGLLpppGITSGEILFDGEDLLKLSEKEl 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 89 -----RYVNTVFQ-SY-ALFPHMTVFENVAFGLRM-QKTPAAEIAPRVTDALRMVQL---EEFAQRKPHQLSGGQQQRVA 157
Cdd:COG0444 81 rkirgREIQMIFQdPMtSLNPVMTVGDQIAEPLRIhGGLSKAEARERAIELLERVGLpdpERRLDRYPHELSGGMRQRVM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 158 IARAVVNKPRLLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNG-VIEQdGTPREIY 236
Cdd:COG0444 161 IARALALEPKLLIADEPTTALDVTIQAQILNLLKDLQRELGLAILFITHDLGVVAEIADRVAVMYAGrIVEE-GPVEELF 239
|
....
gi 16764581 237 EEPK 240
Cdd:COG0444 240 ENPR 243
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
20-270 |
1.82e-54 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 182.69 E-value: 1.82e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 20 LSGISKSFDGK----EVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVP-----AENRY 90
Cdd:PRK11153 4 LKNISKVFPQGgrtiHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSekelrKARRQ 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 91 VNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLL 170
Cdd:PRK11153 84 IGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLL 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 171 LDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNG-VIEQdGTPREIYEEPKNLFVAGFIG 249
Cdd:PRK11153 164 CDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGrLVEQ-GTVSEVFSHPKHPLTREFIQ 242
|
250 260
....*....|....*....|...
gi 16764581 250 EINRFD--ATVIERLDEQRVRAS 270
Cdd:PRK11153 243 STLHLDlpEDYLARLQAEPTTGS 265
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
33-224 |
3.44e-54 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 178.43 E-value: 3.44e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 33 ISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHvPAENRYVntVFQSYALFPHMTVFENVAF 112
Cdd:TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITE-PGPDRMV--VFQNYSLLPWLTVRENIAL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 113 GLR--MQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALDYKLRKQMQNEL 190
Cdd:TIGR01184 78 AVDrvLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEEL 157
|
170 180 190
....*....|....*....|....*....|....
gi 16764581 191 KALQRKLGITFVFVTHDQEEALTMSDRIVVMRNG 224
Cdd:TIGR01184 158 MQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNG 191
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
36-239 |
6.75e-54 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 181.85 E-value: 6.75e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 36 LDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDN-------QDIThVPAENRYVNTVFQSYALFPHMTVFE 108
Cdd:TIGR02142 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGrtlfdsrKGIF-LPPEKRRIGYVFQEARLFPHLSVRG 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 109 NVAFGLRMQKTPAAEIAP-RVTDalrMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALDYKLRKQMQ 187
Cdd:TIGR02142 95 NLRYGMKRARPSERRISFeRVIE---LLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEIL 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 16764581 188 NELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYEEP 239
Cdd:TIGR02142 172 PYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASP 223
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
36-230 |
7.09e-54 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 176.91 E-value: 7.09e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 36 LDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAENRYVNTVFQSYALFPHMTVFENVAFGLR 115
Cdd:cd03298 17 FDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLS 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 116 MQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALDYKLRKQMQNELKALQR 195
Cdd:cd03298 97 PGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHA 176
|
170 180 190
....*....|....*....|....*....|....*
gi 16764581 196 KLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDG 230
Cdd:cd03298 177 ETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
20-238 |
7.21e-54 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 178.15 E-value: 7.21e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 20 LSGISKSF-DGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAEN-----RYVNT 93
Cdd:cd03256 3 VENLSKTYpNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKAlrqlrRQIGM 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 94 VFQSYALFPHMTVFENVAFGLRMQKT---------PAAEIaPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVN 164
Cdd:cd03256 83 IFQQFNLIERLSVLENVLSGRLGRRStwrslfglfPKEEK-QRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQ 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 16764581 165 KPRLLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYEE 238
Cdd:cd03256 162 QPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELTDE 235
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
20-235 |
9.46e-54 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 178.31 E-value: 9.46e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 20 LSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAENRY----VNTvF 95
Cdd:COG0411 7 VRGLTKRFGGLVAVDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGFYRPTSGRILFDGRDITGLPPHRIArlgiART-F 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 96 QSYALFPHMTVFENVA---------------FGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIAR 160
Cdd:COG0411 86 QNPRLFPELTVLENVLvaaharlgrgllaalLRLPRARREEREARERAEELLERVGLADRADEPAGNLSYGQQRRLEIAR 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 16764581 161 AVVNKPRLLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREI 235
Cdd:COG0411 166 ALATEPKLLLLDEPAAGLNPEETEELAELIRRLRDERGITILLIEHDMDLVMGLADRIVVLDFGRVIAEGTPAEV 240
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
15-239 |
9.85e-54 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 177.59 E-value: 9.85e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 15 SPLVLLSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAENRYVNTV 94
Cdd:COG1121 4 MPAIELENLTVSYGGRPVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFGKPPRRARRRIGYVPQR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 95 FQSYALFPhMTVFENVAFGL----RMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLL 170
Cdd:COG1121 84 AEVDWDFP-ITVRDVVLMGRygrrGLFRRPSRADREAVDEALERVGLEDLADRPIGELSGGQQQRVLLARALAQDPDLLL 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16764581 171 LDESLSALDYKLRKQMQNELKALQRKlGITFVFVTHDQEEALTMSDRIVVMRNGVIEqDGTPREIYEEP 239
Cdd:COG1121 163 LDEPFAGVDAATEEALYELLRELRRE-GKTILVVTHDLGAVREYFDRVLLLNRGLVA-HGPPEEVLTPE 229
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
20-235 |
5.31e-53 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 175.70 E-value: 5.31e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 20 LSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAENRY---VNTVFQ 96
Cdd:cd03219 3 VRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIArlgIGRTFQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 97 SYALFPHMTVFENVAFGLRMQKTPA----------AEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKP 166
Cdd:cd03219 83 IPRLFPELTVLENVMVAAQARTGSGlllararreeREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDP 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16764581 167 RLLLLDESLSALDYKLRKQMQNELKALqRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREI 235
Cdd:cd03219 163 KLLLLDEPAAGLNPEETEELAELIREL-RERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEV 230
|
|
| ABC_phnC |
TIGR02315 |
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of ... |
22-238 |
1.92e-52 |
|
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. [Transport and binding proteins, Anions]
Pssm-ID: 131368 [Multi-domain] Cd Length: 243 Bit Score: 174.41 E-value: 1.92e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 22 GISKSF-DGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAEN-----RYVNTVF 95
Cdd:TIGR02315 6 NLSKVYpNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKlrklrRRIGMIF 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 96 QSYALFPHMTVFENVAFG-LRMQKT--------PAAEIApRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKP 166
Cdd:TIGR02315 86 QHYNLIERLTVLENVLHGrLGYKPTwrsllgrfSEEDKE-RALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQP 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 16764581 167 RLLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYEE 238
Cdd:TIGR02315 165 DLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSELDDE 236
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
33-247 |
3.77e-51 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 175.99 E-value: 3.77e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 33 ISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVP-AENRYVN-----TVFQSYALFPHMTV 106
Cdd:PRK10070 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISdAELREVRrkkiaMVFQSFALMPHMTV 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 107 FENVAFGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALDYKLRKQM 186
Cdd:PRK10070 124 LDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEM 203
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 16764581 187 QNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYEEPKNLFVAGF 247
Cdd:PRK10070 204 QDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVRTF 264
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
20-230 |
6.78e-51 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 168.38 E-value: 6.78e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 20 LSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDIthvpaenryvntvfqsya 99
Cdd:cd03214 2 VENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDL------------------ 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 100 lfphmtvfenvafglrmQKTPAAEIAPR---VTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLS 176
Cdd:cd03214 64 -----------------ASLSPKELARKiayVPQALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTS 126
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 16764581 177 ALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDG 230
Cdd:cd03214 127 HLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
20-226 |
7.17e-51 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 167.96 E-value: 7.17e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 20 LSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAENR-YVNTVFQSY 98
Cdd:cd03230 3 VRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKrRIGYLPEEP 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 99 ALFPHMTVFENVafglrmqktpaaeiaprvtdalrmvqleefaqrkphQLSGGQQQRVAIARAVVNKPRLLLLDESLSAL 178
Cdd:cd03230 83 SLYENLTVRENL------------------------------------KLSGGMKQRLALAQALLHDPELLILDEPTSGL 126
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 16764581 179 DYKLRKQMQNELKALQRKlGITFVFVTHDQEEALTMSDRIVVMRNGVI 226
Cdd:cd03230 127 DPESRREFWELLRELKKE-GKTILLSSHILEEAERLCDRVAILNNGRI 173
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
36-240 |
1.05e-49 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 174.87 E-value: 1.05e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 36 LDLTINNGEFLTLLGPSGCGKTT----VLRLIAGletvdAGHIMLDNQDITHVPAEN-----RYVNTVFQS-YA-LFPHM 104
Cdd:COG4172 305 VSLTLRRGETLGLVGESGSGKSTlglaLLRLIPS-----EGEIRFDGQDLDGLSRRAlrplrRRMQVVFQDpFGsLSPRM 379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 105 TVFENVAFGLRMQKTP--AAEIAPRVTDALRMVQL-EEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALDYK 181
Cdd:COG4172 380 TVGQIIAEGLRVHGPGlsAAERRARVAEALEEVGLdPAARHRYPHEFSGGQRQRIAIARALILEPKLLVLDEPTSALDVS 459
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 182 LRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNG-VIEQdGTPREIYEEPK 240
Cdd:COG4172 460 VQAQILDLLRDLQREHGLAYLFISHDLAVVRALAHRVMVMKDGkVVEQ-GPTEQVFDAPQ 518
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
35-235 |
1.76e-49 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 166.30 E-value: 1.76e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 35 QLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAENRYVNTVFQSYALFPHMTVFENVAFGL 114
Cdd:PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 115 -------RMQKTPAAEIAPRVTdalrmvqLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALDYKLRKQMQ 187
Cdd:PRK10771 97 npglklnAAQREKLHAIARQMG-------IEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEML 169
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 16764581 188 NELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREI 235
Cdd:PRK10771 170 TLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDEL 217
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
33-226 |
1.39e-48 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 163.35 E-value: 1.39e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 33 ISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITH-----VPAENRYVNTVFQSYALFPHMTVF 107
Cdd:cd03292 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDlrgraIPYLRRKIGVVFQDFRLLPDRNVY 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 108 ENVAFGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALDYKLRKQMQ 187
Cdd:cd03292 97 ENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIM 176
|
170 180 190
....*....|....*....|....*....|....*....
gi 16764581 188 NELKALQrKLGITFVFVTHDQEEALTMSDRIVVMRNGVI 226
Cdd:cd03292 177 NLLKKIN-KAGTTVVVATHAKELVDTTRHRVIALERGKL 214
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
20-240 |
1.82e-48 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 164.03 E-value: 1.82e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 20 LSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQ--DITHVPAEN------RYV 91
Cdd:COG4161 5 LKNINCFYGSHQALFDINLECPSGETLVLLGPSGAGKSSLLRVLNLLETPDSGQLNIAGHqfDFSQKPSEKairllrQKV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 92 NTVFQSYALFPHMTVFEN-VAFGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLL 170
Cdd:COG4161 85 GMVFQQYNLWPHLTVMENlIEAPCKVLGLSKEQAREKAMKLLARLRLTDKADRFPLHLSGGQQQRVAIARALMMEPQVLL 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 171 LDESLSALDYKLRKQMQNELKALQrKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTpREIYEEPK 240
Cdd:COG4161 165 FDEPTAALDPEITAQVVEIIRELS-QTGITQVIVTHEVEFARKVASQVVYMEKGRIIEQGD-ASHFTQPQ 232
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
16-211 |
1.85e-48 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 162.65 E-value: 1.85e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 16 PLVLLSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAE-NRYVNTV 94
Cdd:COG4133 1 MMLEAENLSCRRGERLLFSGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGEPIRDAREDyRRRLAYL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 95 FQSYALFPHMTVFENVAFGLRMQKTPAAEIapRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDES 174
Cdd:COG4133 81 GHADGLKPELTVRENLRFWAALYGLRADRE--AIDEALEAVGLAGLADLPVRQLSAGQKRRVALARLLLSPAPLWLLDEP 158
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 16764581 175 LSALDyklrKQMQNELKAL---QRKLGITFVFVTHDQEEA 211
Cdd:COG4133 159 FTALD----AAGVALLAELiaaHLARGGAVLLTTHQPLEL 194
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
20-240 |
8.06e-48 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 162.49 E-value: 8.06e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 20 LSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQ--DITHVPAEN------RYV 91
Cdd:PRK11124 5 LNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNhfDFSKTPSDKairelrRNV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 92 NTVFQSYALFPHMTVFENVAFG----LRMQKTPAAEIAPRVTDALRmvqLEEFAQRKPHQLSGGQQQRVAIARAVVNKPR 167
Cdd:PRK11124 85 GMVFQQYNLWPHLTVQQNLIEApcrvLGLSKDQALARAEKLLERLR---LKPYADRFPLHLSGGQQQRVAIARALMMEPQ 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 16764581 168 LLLLDESLSALDYKLRKQMQNELKALQrKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTpREIYEEPK 240
Cdd:PRK11124 162 VLLFDEPTAALDPEITAQIVSIIRELA-ETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGD-ASCFTQPQ 232
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
28-234 |
9.52e-48 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 170.35 E-value: 9.52e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 28 DGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAEN--RYVNTVFQSYALFpHMT 105
Cdd:COG1132 351 GDRPVLKDISLTIPPGETVALVGPSGSGKSTLVNLLLRFYDPTSGRILIDGVDIRDLTLESlrRQIGVVPQDTFLF-SGT 429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 106 VFENVAFGlRMQKTPAaeiapRVTDALRMVQLEEFAQRKPH-----------QLSGGQQQRVAIARAVVNKPRLLLLDES 174
Cdd:COG1132 430 IRENIRYG-RPDATDE-----EVEEAAKAAQAHEFIEALPDgydtvvgergvNLSGGQRQRIAIARALLKDPPILILDEA 503
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 175 LSALDYKLRKQMQNELKALQRklGITFVFVTHdQEEALTMSDRIVVMRNGVIEQDGTPRE 234
Cdd:COG1132 504 TSALDTETEALIQEALERLMK--GRTTIVIAH-RLSTIRNADRILVLDDGRIVEQGTHEE 560
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
20-226 |
1.65e-47 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 160.78 E-value: 1.65e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 20 LSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAENRYVNTVFQSYA 99
Cdd:cd03235 2 VEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 100 LFPhMTVFENVAFGL----RMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESL 175
Cdd:cd03235 82 DFP-ISVRDVVLMGLyghkGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPF 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 16764581 176 SALDYKLRKQMQNELKALQRKlGITFVFVTHDQEEALTMSDRIVVMRNGVI 226
Cdd:cd03235 161 AGVDPKTQEDIYELLRELRRE-GMTILVVTHDLGLVLEYFDRVLLLNRTVV 210
|
|
| HisP |
COG4598 |
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]; |
16-240 |
3.32e-47 |
|
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443652 [Multi-domain] Cd Length: 259 Bit Score: 161.12 E-value: 3.32e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 16 PLVLLSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDIT--------HVPAE 87
Cdd:COG4598 7 PALEVRDLHKSFGDLEVLKGVSLTARKGDVISIIGSSGSGKSTFLRCINLLETPDSGEIRVGGEEIRlkpdrdgeLVPAD 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 88 NRYVNT-------VFQSYALFPHMTVFENVAFG-LRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIA 159
Cdd:COG4598 87 RRQLQRirtrlgmVFQSFNLWSHMTVLENVIEApVHVLGRPKAEAIERAEALLAKVGLADKRDAYPAHLSGGQQQRAAIA 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 160 RAVVNKPRLLLLDESLSALDyklrKQMQNELKALQRKL---GITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIY 236
Cdd:COG4598 167 RALAMEPEVMLFDEPTSALD----PELVGEVLKVMRDLaeeGRTMLVVTHEMGFARDVSSHVVFLHQGRIEEQGPPAEVF 242
|
....
gi 16764581 237 EEPK 240
Cdd:COG4598 243 GNPK 246
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
36-173 |
1.98e-46 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 155.50 E-value: 1.98e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 36 LDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITH--VPAENRYVNTVFQSYALFPHMTVFENVAFG 113
Cdd:pfam00005 4 VSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDdeRKSLRKEIGYVFQDPQLFPRLTVRENLRLG 83
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 16764581 114 LRMQKTPAAEIAPRVTDALRMVQLEEFAQRK----PHQLSGGQQQRVAIARAVVNKPRLLLLDE 173
Cdd:pfam00005 84 LLLKGLSKREKDARAEEALEKLGLGDLADRPvgerPGTLSGGQRQRVAIARALLTKPKLLLLDE 147
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
20-224 |
2.86e-46 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 155.48 E-value: 2.86e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 20 LSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAENRyvntvfqsya 99
Cdd:cd00267 2 IENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEEL---------- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 100 lfphmtvfenvafglrmqktpaaeiaprvtdaLRMVQLEefaqrkpHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALD 179
Cdd:cd00267 72 --------------------------------RRRIGYV-------PQLSGGQRQRVALARALLLNPDLLLLDEPTSGLD 112
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 16764581 180 YKLRKQMQNELKALQRKlGITFVFVTHDQEEALTMSDRIVVMRNG 224
Cdd:cd00267 113 PASRERLLELLRELAEE-GRTVIIVTHDPELAELAADRVIVLKDG 156
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
10-239 |
5.36e-46 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 165.71 E-value: 5.36e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 10 QPRSLSPLVLLSGISKSFDG--KEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAE 87
Cdd:COG4987 326 APAPGGPSLELEDVSFRYPGagRPVLDGLSLTLPPGERVAIVGPSGSGKSTLLALLLRFLDPQSGSITLGGVDLRDLDED 405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 88 N--RYVNTVFQSYALFpHMTVFENVAFGlRMQKTPAAeiaprVTDALRMVQLEEFAQRKPH-----------QLSGGQQQ 154
Cdd:COG4987 406 DlrRRIAVVPQRPHLF-DTTLRENLRLA-RPDATDEE-----LWAALERVGLGDWLAALPDgldtwlgeggrRLSGGERR 478
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 155 RVAIARAVVNKPRLLLLDESLSALDYKLRKQ-MQNELKALQRKlgiTFVFVTHDQEEALTMsDRIVVMRNGVIEQDGTPR 233
Cdd:COG4987 479 RLALARALLRDAPILLLDEPTEGLDAATEQAlLADLLEALAGR---TVLLITHRLAGLERM-DRILVLEDGRIVEQGTHE 554
|
....*.
gi 16764581 234 EIYEEP 239
Cdd:COG4987 555 ELLAQN 560
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
38-237 |
2.41e-45 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 157.10 E-value: 2.41e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 38 LTINNGEFLTLLGPSGCGKTTVLRLIAGL-----ETVDAGHIMLDNQDITHVpaeNRYVNTVFQSY-ALFPHMTVFENVA 111
Cdd:PRK13635 28 FSVYEGEWVAIVGHNGSGKSTLAKLLNGLllpeaGTITVGGMVLSEETVWDV---RRQVGMVFQNPdNQFVGATVQDDVA 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 112 FGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALDYKLRKQMQNELK 191
Cdd:PRK13635 105 FGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVR 184
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 16764581 192 ALQRKLGITFVFVTHDQEEALTmSDRIVVMRNGVIEQDGTPREIYE 237
Cdd:PRK13635 185 QLKEQKGITVLSITHDLDEAAQ-ADRVIVMNKGEILEEGTPEEIFK 229
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
20-224 |
3.45e-45 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 152.92 E-value: 3.45e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 20 LSGISKSFDG--KEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAEN--RYVNTVF 95
Cdd:cd03228 3 FKNVSFSYPGrpKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESlrKNIAYVP 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 96 QSYALFpHMTVFENVafglrmqktpaaeiaprvtdalrmvqleefaqrkphqLSGGQQQRVAIARAVVNKPRLLLLDESL 175
Cdd:cd03228 83 QDPFLF-SGTIRENI-------------------------------------LSGGQRQRIAIARALLRDPPILILDEAT 124
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 16764581 176 SALDYKLRKQMQNELKALQRklGITFVFVTHDqEEALTMSDRIVVMRNG 224
Cdd:cd03228 125 SALDPETEALILEALRALAK--GKTVIVIAHR-LSTIRDADRIIVLDDG 170
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
28-238 |
3.47e-45 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 163.39 E-value: 3.47e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 28 DGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAEN--RYVNTVFQSYALFpHMT 105
Cdd:COG4988 348 GGRPALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPYSGSILINGVDLSDLDPASwrRQIAWVPQNPYLF-AGT 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 106 VFENVAFGlrmqkTPAAEIApRVTDALRMVQLEEFAQRKPH-----------QLSGGQQQRVAIARAVVNKPRLLLLDES 174
Cdd:COG4988 427 IRENLRLG-----RPDASDE-ELEAALEAAGLDEFVAALPDgldtplgeggrGLSGGQAQRLALARALLRDAPLLLLDEP 500
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 16764581 175 LSALDYKLRKQMQNELKALQRklGITFVFVTHDqEEALTMSDRIVVMRNGVIEQDGTPREIYEE 238
Cdd:COG4988 501 TAHLDAETEAEILQALRRLAK--GRTVILITHR-LALLAQADRILVLDDGRIVEQGTHEELLAK 561
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
22-249 |
1.52e-44 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 154.14 E-value: 1.52e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 22 GISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHI-----MLD-----NQDITHVPAENRYV 91
Cdd:PRK11264 8 NLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIrvgdiTIDtarslSQQKGLIRQLRQHV 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 92 NTVFQSYALFPHMTVFENVAFG-LRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLL 170
Cdd:PRK11264 88 GFVFQNFNLFPHRTVLENIIEGpVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVIL 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 171 LDESLSALDYKLRKQMQNELKAL-QRKLgiTFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYEEPKN----LFVA 245
Cdd:PRK11264 168 FDEPTSALDPELVGEVLNTIRQLaQEKR--TMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFADPQQprtrQFLE 245
|
....
gi 16764581 246 GFIG 249
Cdd:PRK11264 246 KFLL 249
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
20-235 |
3.21e-44 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 152.20 E-value: 3.21e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 20 LSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAENR------Yvnt 93
Cdd:cd03224 3 VENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERaragigY--- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 94 VFQSYALFPHMTVFENVAFGLRMQKtpAAEIAPRVTDALRMV-QLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLD 172
Cdd:cd03224 80 VPEGRRIFPELTVEENLLLGAYARR--RAKRKARLERVYELFpRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLD 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 16764581 173 ESLSALDYKLRKQMQNELKALqRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREI 235
Cdd:cd03224 158 EPSEGLAPKIVEEIFEAIREL-RDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAEL 219
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
40-236 |
4.16e-44 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 153.73 E-value: 4.16e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 40 INNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDIT--HVPAENRYVNTVFQSY-ALFPHMTVFENVAFGLRM 116
Cdd:PRK13650 30 VKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTeeNVWDIRHKIGMVFQNPdNQFVGATVEDDVAFGLEN 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 117 QKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALDYKLRKQMQNELKALQRK 196
Cdd:PRK13650 110 KGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDD 189
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 16764581 197 LGITFVFVTHDQEEaLTMSDRIVVMRNGVIEQDGTPREIY 236
Cdd:PRK13650 190 YQMTVISITHDLDE-VALSDRVLVMKNGQVESTSTPRELF 228
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
21-234 |
1.14e-43 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 151.81 E-value: 1.14e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 21 SGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVP----AENRYVntVFQ 96
Cdd:COG4559 5 ENLSVRLGGRTLLDDVSLTLRPGELTAIIGPNGAGKSTLLKLLTGELTPSSGEVRLNGRPLAAWSpwelARRRAV--LPQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 97 SYAL-FPhMTVFENVAFGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARA-------VVNKPRL 168
Cdd:COG4559 83 HSSLaFP-FTVEEVVALGRAPHGSSAAQDRQIVREALALVGLAHLAGRSYQTLSGGEQQRVQLARVlaqlwepVDGGPRW 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16764581 169 LLLDESLSALDykLRKQmQNELKALqRKL---GITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPRE 234
Cdd:COG4559 162 LFLDEPTSALD--LAHQ-HAVLRLA-RQLarrGGGVVAVLHDLNLAAQYADRILLLHQGRLVAQGTPEE 226
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
30-231 |
2.47e-43 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 151.38 E-value: 2.47e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 30 KEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAEN-----RYVNTVFQSY--ALFP 102
Cdd:PRK10419 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQrkafrRDIQMVFQDSisAVNP 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 103 HMTVFENVAFGLR-MQKTPAAEIAPRVTDALRMVQL-EEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALDY 180
Cdd:PRK10419 105 RKTVREIIREPLRhLLSLDKAERLARASEMLRAVDLdDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDL 184
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 16764581 181 KLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGT 231
Cdd:PRK10419 185 VLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQP 235
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
30-238 |
2.48e-43 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 152.12 E-value: 2.48e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 30 KEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAE----NRYVNTVFQ--SYALFPH 103
Cdd:PRK13637 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKlsdiRKKVGLVFQypEYQLFEE 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 104 mTVFENVAFGLRMQKTPAAEIAPRVTDALRMVQL--EEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALDYK 181
Cdd:PRK13637 100 -TIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLdyEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPK 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 16764581 182 LRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYEE 238
Cdd:PRK13637 179 GRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKE 235
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
27-241 |
5.13e-43 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 150.19 E-value: 5.13e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 27 FDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLR-------LIAGLETvdAGHIMLDNQDI----THVPAENRYVNTVF 95
Cdd:COG1117 21 YGDKQALKDINLDIPENKVTALIGPSGCGKSTLLRclnrmndLIPGARV--EGEILLDGEDIydpdVDVVELRRRVGMVF 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 96 QSYALFPhMTVFENVAFGLRMQ-KTPAAEIAPRVTDALRMVQL-EEFAQR--KP-HQLSGGQQQRVAIARAVVNKPRLLL 170
Cdd:COG1117 99 QKPNPFP-KSIYDNVAYGLRLHgIKSKSELDEIVEESLRKAALwDEVKDRlkKSaLGLSGGQQQRLCIARALAVEPEVLL 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 171 LDESLSALD-----------YKLRKQMqnelkalqrklgiTFVFVTHDQEEALTMSDRIVVMRNG-VIEQDGTpREIYEE 238
Cdd:COG1117 178 MDEPTSALDpistakieeliLELKKDY-------------TIVIVTHNMQQAARVSDYTAFFYLGeLVEFGPT-EQIFTN 243
|
...
gi 16764581 239 PKN 241
Cdd:COG1117 244 PKD 246
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
21-235 |
5.74e-43 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 149.06 E-value: 5.74e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 21 SGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAE-NRYVNTVFQSYA 99
Cdd:cd03265 4 ENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREvRRRIGIVFQDLS 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 100 LFPHMTVFENVAFGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALD 179
Cdd:cd03265 84 VDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLD 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 16764581 180 YKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREI 235
Cdd:cd03265 164 PQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
|
| nickel_nikE |
TIGR02769 |
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a ... |
30-228 |
8.72e-43 |
|
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131816 [Multi-domain] Cd Length: 265 Bit Score: 149.96 E-value: 8.72e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 30 KEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAEN-----RYVNTVFQ-SYALF-P 102
Cdd:TIGR02769 24 APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQrrafrRDVQLVFQdSPSAVnP 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 103 HMTVFENVAFGLR-MQKTPAAEIAPRVTDALRMVQLE-EFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALDY 180
Cdd:TIGR02769 104 RMTVRQIIGEPLRhLTSLDESEQKARIAELLDMVGLRsEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDM 183
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 16764581 181 KLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNG-VIEQ 228
Cdd:TIGR02769 184 VLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGqIVEE 232
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
20-240 |
2.69e-42 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 147.69 E-value: 2.69e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 20 LSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAENR------YVNt 93
Cdd:cd03218 3 AENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRarlgigYLP- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 94 vfQSYALFPHMTVFENVAFGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDE 173
Cdd:cd03218 82 --QEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDE 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16764581 174 SLSALDYKLRKQMQNELKAL-QRKLGItfvFVT-HDQEEALTMSDRIVVMRNGVIEQDGTPREIYEEPK 240
Cdd:cd03218 160 PFAGVDPIAVQDIQKIIKILkDRGIGV---LITdHNVRETLSITDRAYIIYEGKVLAEGTPEEIAANEL 225
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
18-235 |
7.72e-42 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 146.11 E-value: 7.72e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 18 VLLSGISKSFDGKE--VISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDI-THVPAENRYVNTV 94
Cdd:cd03263 1 LQIRNLTKTYKKGTkpAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIrTDRKAARQSLGYC 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 95 FQSYALFPHMTVFENVAFGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDES 174
Cdd:cd03263 81 PQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEP 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 16764581 175 LSALDYKLRKQMQNELKALQRKLgiTFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREI 235
Cdd:cd03263 161 TSGLDPASRRAIWDLILEVRKGR--SIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
20-230 |
1.34e-41 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 145.03 E-value: 1.34e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 20 LSGISKSFDGKEVISQLDLTINNGeFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAENRY-VNTVFQSY 98
Cdd:cd03264 3 LENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRrIGYLPQEF 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 99 ALFPHMTVFENVAFGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSAL 178
Cdd:cd03264 82 GVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGL 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 16764581 179 DYKLRKQMQNELKALQRklGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDG 230
Cdd:cd03264 162 DPEERIRFRNLLSELGE--DRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
15-240 |
2.35e-41 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 145.12 E-value: 2.35e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 15 SPLVLLSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAENR----- 89
Cdd:COG0410 1 MPMLEVENLHAGYGGIHVLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRSGSIRFDGEDITGLPPHRIarlgi 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 90 -YVNtvfQSYALFPHMTVFENVAFGLRMQKtPAAEIAPRVTDALRMV-QLEEFAQRKPHQLSGGQQQRVAIARAVVNKPR 167
Cdd:COG0410 81 gYVP---EGRRIFPSLTVEENLLLGAYARR-DRAEVRADLERVYELFpRLKERRRQRAGTLSGGEQQMLAIGRALMSRPK 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 16764581 168 LLLLDE-SLsALDYKLRKQMQNELKALqRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYEEPK 240
Cdd:COG0410 157 LLLLDEpSL-GLAPLIVEEIFEIIRRL-NREGVTILLVEQNARFALEIADRAYVLERGRIVLEGTAAELLADPE 228
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
21-234 |
5.62e-41 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 144.91 E-value: 5.62e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 21 SGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVP----AENRYVntVFQ 96
Cdd:PRK13548 6 RNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSpaelARRRAV--LPQ 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 97 SYAL-FPhMTVFENVAFGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVV------NKPRLL 169
Cdd:PRK13548 84 HSSLsFP-FTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAqlwepdGPPRWL 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 16764581 170 LLDESLSALDykLRKQMQ--NELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPRE 234
Cdd:PRK13548 163 LLDEPTSALD--LAHQHHvlRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAE 227
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
22-240 |
6.99e-41 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 144.02 E-value: 6.99e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 22 GISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAENR------YVNtvf 95
Cdd:COG1137 8 NLVKSYGKRTVVKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGRIFLDGEDITHLPMHKRarlgigYLP--- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 96 QSYALFPHMTVFENVAFGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESL 175
Cdd:COG1137 85 QEASIFRKLTVEDNILAVLELRKLSKKEREERLEELLEEFGITHLRKSKAYSLSGGERRRVEIARALATNPKFILLDEPF 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 16764581 176 SALDYKLRKQMQNELKAL-QRKLGitfVFVT-HDQEEALTMSDRIVVMRNGVIEQDGTPREIYEEPK 240
Cdd:COG1137 165 AGVDPIAVADIQKIIRHLkERGIG---VLITdHNVRETLGICDRAYIISEGKVLAEGTPEEILNNPL 228
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
15-240 |
3.55e-40 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 149.06 E-value: 3.55e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 15 SPLVLLSGISKSFDG----KEVISQLDLTINNGEFLTLLGPSGCGKT----TVLRLIAGLETVDAGHIMLDNQDITHVPA 86
Cdd:COG4172 4 MPLLSVEDLSVAFGQgggtVEAVKGVSFDIAAGETLALVGESGSGKSvtalSILRLLPDPAAHPSGSILFDGQDLLGLSE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 87 E-------NRyVNTVFQ--SYALFPHMTVFENVAFGLRM-QKTPAAEIAPRVTDALRMVQLEEFAQR---KPHQLSGGQQ 153
Cdd:COG4172 84 RelrrirgNR-IAMIFQepMTSLNPLHTIGKQIAEVLRLhRGLSGAAARARALELLERVGIPDPERRldaYPHQLSGGQR 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 154 QRVAIARAVVNKPRLLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDqeeaLT----MSDRIVVMRNGVIEQD 229
Cdd:COG4172 163 QRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKDLQRELGMALLLITHD----LGvvrrFADRVAVMRQGEIVEQ 238
|
250
....*....|.
gi 16764581 230 GTPREIYEEPK 240
Cdd:COG4172 239 GPTAELFAAPQ 249
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
28-237 |
3.91e-40 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 141.98 E-value: 3.91e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 28 DGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAEN--RYVNTVFQSYALFpHMT 105
Cdd:cd03251 13 DGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASlrRQIGLVSQDVFLF-NDT 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 106 VFENVAFGlrmqkTPAAEIApRVTDALRMVQLEEFAQRKPH-----------QLSGGQQQRVAIARAVVNKPRLLLLDES 174
Cdd:cd03251 92 VAENIAYG-----RPGATRE-EVEEAARAANAHEFIMELPEgydtvigergvKLSGGQRQRIAIARALLKDPPILILDEA 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 16764581 175 LSALDYKLRKQMQNELKALQRklGITFVFVTHdQEEALTMSDRIVVMRNGVIEQDGTPREIYE 237
Cdd:cd03251 166 TSALDTESERLVQAALERLMK--NRTTFVIAH-RLSTIENADRIVVLEDGKIVERGTHEELLA 225
|
|
| SapF |
COG4167 |
ABC-type antimicrobial peptide export system, ATPase component SapF [Defense mechanisms]; |
15-241 |
1.38e-39 |
|
ABC-type antimicrobial peptide export system, ATPase component SapF [Defense mechanisms];
Pssm-ID: 443328 [Multi-domain] Cd Length: 265 Bit Score: 141.51 E-value: 1.38e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 15 SPLVLLSGISKSFDGK---------EVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVP 85
Cdd:COG4167 2 SALLEVRNLSKTFKYRtglfrrqqfEAVKPVSFTLEAGQTLAIIGENGSGKSTLAKMLAGIIEPTSGEILINGHKLEYGD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 86 AENR--YVNTVFQ--SYALFPHMTVFENVAFGLRMQ-KTPAAEIAPRVTDALRMVQL-EEFAQRKPHQLSGGQQQRVAIA 159
Cdd:COG4167 82 YKYRckHIRMIFQdpNTSLNPRLNIGQILEEPLRLNtDLTAEEREERIFATLRLVGLlPEHANFYPHMLSSGQKQRVALA 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 160 RAVVNKPRLLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNG-VIEQDGTpREIYEE 238
Cdd:COG4167 162 RALILQPKIIIADEALAALDMSVRSQIINLMLELQEKLGISYIYVSQHLGIVKHISDKVLVMHQGeVVEYGKT-AEVFAN 240
|
...
gi 16764581 239 PKN 241
Cdd:COG4167 241 PQH 243
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
20-267 |
1.76e-39 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 140.99 E-value: 1.76e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 20 LSGISKSF-----DGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAENR--YVN 92
Cdd:COG1101 4 LKNLSKTFnpgtvNEKRALDGLNLTIEEGDFVTVIGSNGAGKSTLLNAIAGSLPPDSGSILIDGKDVTKLPEYKRakYIG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 93 TVFQSYAL--FPHMTVFENVA--------FGLRmqktpaaeiaPRVTDALRmvqlEEFAQR--------------KPHQL 148
Cdd:COG1101 84 RVFQDPMMgtAPSMTIEENLAlayrrgkrRGLR----------RGLTKKRR----ELFRELlatlglglenrldtKVGLL 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 149 SGGQQQRVAIARAVVNKPRLLLLDESLSALDYKlRKQMQNEL-KALQRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIE 227
Cdd:COG1101 150 SGGQRQALSLLMATLTKPKLLLLDEHTAALDPK-TAALVLELtEKIVEENNLTTLMVTHNMEQALDYGNRLIMMHEGRII 228
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 16764581 228 QD--GtpreiyEEPKNLFVAGFigeINRFDATVIERLDEQRV 267
Cdd:COG1101 229 LDvsG------EEKKKLTVEDL---LELFEEIRGEELADDRL 261
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
17-230 |
2.41e-39 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 139.43 E-value: 2.41e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 17 LVLLSGISKSFDGKE----VISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAE-NRYV 91
Cdd:cd03266 1 MITADALTKRFRDVKktvqAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEaRRRL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 92 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLL 171
Cdd:cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLL 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 16764581 172 DESLSALDYKLRKQMQNELKALqRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDG 230
Cdd:cd03266 161 DEPTTGLDVMATRALREFIRQL-RALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
30-238 |
1.81e-38 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 139.07 E-value: 1.81e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 30 KEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIM---LDNQDITHVPAENRYVNTVFQSyalfPH--- 103
Cdd:PRK13633 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYvdgLDTSDEENLWDIRNKAGMVFQN----PDnqi 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 104 --MTVFENVAFGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALDYK 181
Cdd:PRK13633 99 vaTIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPS 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 16764581 182 LRKQMQNELKALQRKLGITFVFVTHDQEEALTmSDRIVVMRNGVIEQDGTPREIYEE 238
Cdd:PRK13633 179 GRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTPKEIFKE 234
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
20-226 |
1.99e-38 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 136.58 E-value: 1.99e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 20 LSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAENRYVNTVFQSYA 99
Cdd:cd03268 3 TNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 100 LFPHMTVFENVAFGLRMQKTPAAeiapRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALD 179
Cdd:cd03268 83 FYPNLTARENLRLLARLLGIRKK----RIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLD 158
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 16764581 180 YKLRKQMQNELKALqRKLGITFVFVTHDQEEALTMSDRIVVMRNGVI 226
Cdd:cd03268 159 PDGIKELRELILSL-RDQGITVLISSHLLSEIQKVADRIGIINKGKL 204
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
25-240 |
2.11e-38 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 140.23 E-value: 2.11e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 25 KSFDGkevisqLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAENRY-----VNTVFQS-- 97
Cdd:PRK15079 35 KAVDG------VTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRavrsdIQMIFQDpl 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 98 YALFPHMTVFENVAFGLRM--QKTPAAEIAPRVTDALRMVQL-EEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDES 174
Cdd:PRK15079 109 ASLNPRMTIGEIIAEPLRTyhPKLSRQEVKDRVKAMMLKVGLlPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEP 188
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 16764581 175 LSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYEEPK 240
Cdd:PRK15079 189 VSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNPL 254
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
15-231 |
3.98e-38 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 136.87 E-value: 3.98e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 15 SPLVLLSGISKSF-DGK---EVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPA---- 86
Cdd:PRK11629 3 KILLQCDNLCKRYqEGSvqtDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSaaka 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 87 --ENRYVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVN 164
Cdd:PRK11629 83 elRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVN 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 16764581 165 KPRLLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSdRIVVMRNGVIEQDGT 231
Cdd:PRK11629 163 NPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMS-RQLEMRDGRLTAELS 228
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
16-224 |
4.85e-38 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 142.46 E-value: 4.85e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 16 PLVLLSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITH---VPAENRYVN 92
Cdd:COG1129 3 PLLEMRGISKSFGGVKALDGVSLELRPGEVHALLGENGAGKSTLMKILSGVYQPDSGEILLDGEPVRFrspRDAQAAGIA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 93 TVFQSYALFPHMTVFENVAFGlRMQKTPA----AEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRL 168
Cdd:COG1129 83 IIHQELNLVPNLSVAENIFLG-REPRRGGlidwRAMRRRARELLARLGLDIDPDTPVGDLSVAQQQLVEIARALSRDARV 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 169 LLLDESLSALDYK----LRKQMqNELKAlqrkLGITFVFVTHDQEEALTMSDRIVVMRNG 224
Cdd:COG1129 162 LILDEPTASLTEReverLFRII-RRLKA----QGVAIIYISHRLDEVFEIADRVTVLRDG 216
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
20-230 |
5.27e-38 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 135.79 E-value: 5.27e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 20 LSGISKSFDGKE--VISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHV-PAE-NRYVNTVF 95
Cdd:cd03245 5 FRNVSFSYPNQEipALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLdPADlRRNIGYVP 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 96 QSYALFpHMTVFENVAFGLrmqktPAAEIApRVTDALRMVQLEEFAQRKPH-----------QLSGGQQQRVAIARAVVN 164
Cdd:cd03245 85 QDVTLF-YGTLRDNITLGA-----PLADDE-RILRAAELAGVTDFVNKHPNgldlqigergrGLSGGQRQAVALARALLN 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 16764581 165 KPRLLLLDESLSALDYKLRKQMQNELKALQRklGITFVFVTHDQeEALTMSDRIVVMRNGVIEQDG 230
Cdd:cd03245 158 DPPILLLDEPTSAMDMNSEERLKERLRQLLG--DKTLIIITHRP-SLLDLVDRIIVMDSGRIVADG 220
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
15-235 |
9.50e-38 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 135.98 E-value: 9.50e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 15 SPLVLLSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLET-VDAGHIMLDNQDITHV-PAENR--- 89
Cdd:COG1119 1 DPLLELRNVTVRRGGKTILDDISWTVKPGEHWAILGPNGAGKSTLLSLITGDLPpTYGNDVRLFGERRGGEdVWELRkri 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 90 -YVNTVFQSYaLFPHMTVFENVAFGL-----RMQKTPAAEIApRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVV 163
Cdd:COG1119 81 gLVSPALQLR-FPRDETVLDVVLSGFfdsigLYREPTDEQRE-RARELLELLGLAHLADRPFGTLSQGEQRRVLIARALV 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 16764581 164 NKPRLLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREI 235
Cdd:COG1119 159 KDPELLILDEPTAGLDLGARELLLALLDKLAAEGAPTLVLVTHHVEEIPPGITHVLLLKDGRVVAAGPKEEV 230
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
20-226 |
1.51e-37 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 132.94 E-value: 1.51e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 20 LSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDithvpaenryvntvfqsya 99
Cdd:cd03216 3 LRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKE------------------- 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 100 lfphmtvfenVAFglrmqKTPAaeiaprvtDALR----MVqleefaqrkpHQLSGGQQQRVAIARAVVNKPRLLLLDESL 175
Cdd:cd03216 64 ----------VSF-----ASPR--------DARRagiaMV----------YQLSVGERQMVEIARALARNARLLILDEPT 110
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 16764581 176 SALDYKLRKQMQNELKALQRKlGITFVFVTHDQEEALTMSDRIVVMRNGVI 226
Cdd:cd03216 111 AALTPAEVERLFKVIRRLRAQ-GVAVIFISHRLDEVFEIADRVTVLRDGRV 160
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
28-242 |
1.75e-37 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 136.36 E-value: 1.75e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 28 DGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITH----VPAENRYVNTVFQSY--ALF 101
Cdd:PRK13639 13 DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYdkksLLEVRKTVGIVFQNPddQLF 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 102 PHmTVFENVAFGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALDYK 181
Cdd:PRK13639 93 AP-TVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPM 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 16764581 182 LRKQMQNELKALQRKlGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYEEPKNL 242
Cdd:PRK13639 172 GASQIMKLLYDLNKE-GITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSDIETI 231
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
2-238 |
3.48e-37 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 137.27 E-value: 3.48e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 2 GQSKKLNNQPRSLSPLVL-LSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHI-MLDNQ 79
Cdd:PRK13536 25 GISEAKASIPGSMSTVAIdLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKItVLGVP 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 80 dithVPAENRY----VNTVFQSYALFPHMTVFEN-VAFGlRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQ 154
Cdd:PRK13536 105 ----VPARARLararIGVVPQFDNLDLEFTVRENlLVFG-RYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKR 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 155 RVAIARAVVNKPRLLLLDESLSALDYKLRKQMQNELKALQRKlGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPRE 234
Cdd:PRK13536 180 RLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLAR-GKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHA 258
|
....
gi 16764581 235 IYEE 238
Cdd:PRK13536 259 LIDE 262
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
31-238 |
5.67e-37 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 133.82 E-value: 5.67e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 31 EVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDIT--HVPAENRYVNTVFQSYALFPhMTVFE 108
Cdd:cd03249 17 PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRdlNLRWLRSQIGLVSQEPVLFD-GTIAE 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 109 NVAFGlrmqKTPAaeIAPRVTDALRMVQLEEFAQRKPH-----------QLSGGQQQRVAIARAVVNKPRLLLLDESLSA 177
Cdd:cd03249 96 NIRYG----KPDA--TDEEVEEAAKKANIHDFIMSLPDgydtlvgergsQLSGGQKQRIAIARALLRNPKILLLDEATSA 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 16764581 178 LDYKLRKQMQnelKALQR-KLGITFVFVTHdQEEALTMSDRIVVMRNGVIEQDGTPREIYEE 238
Cdd:cd03249 170 LDAESEKLVQ---EALDRaMKGRTTIVIAH-RLSTIRNADLIAVLQNGQVVEQGTHDELMAQ 227
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
16-239 |
6.95e-37 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 133.96 E-value: 6.95e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 16 PLVLLSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVP----AENRYV 91
Cdd:PRK11300 4 PLLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPghqiARMGVV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 92 NTvFQSYALFPHMTVFEN--VAFGLRMQ--------KTPA-----AEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRV 156
Cdd:PRK11300 84 RT-FQHVRLFREMTVIENllVAQHQQLKtglfsgllKTPAfrraeSEALDRAATWLERVGLLEHANRQAGNLAYGQQRRL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 157 AIARAVVNKPRLLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIY 236
Cdd:PRK11300 163 EIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEIR 242
|
...
gi 16764581 237 EEP 239
Cdd:PRK11300 243 NNP 245
|
|
| urea_trans_UrtE |
TIGR03410 |
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC ... |
20-231 |
5.12e-36 |
|
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274567 [Multi-domain] Cd Length: 230 Bit Score: 131.11 E-value: 5.12e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 20 LSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAENR------YVNt 93
Cdd:TIGR03410 3 VSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERaragiaYVP- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 94 vfQSYALFPHMTVFENVAFGLRMQKTPAAEIAPRVTDaLRMVqLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDE 173
Cdd:TIGR03410 82 --QGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYE-LFPV-LKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDE 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 16764581 174 SLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGT 231
Cdd:TIGR03410 158 PTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGA 215
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
15-245 |
5.17e-36 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 132.42 E-value: 5.17e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 15 SPLVLLSGISKSFDGKE--VISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDIThvpAEN---- 88
Cdd:PRK13632 5 SVMIKVENVSFSYPNSEnnALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITIS---KENlkei 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 89 -RYVNTVFQSY-ALFPHMTVFENVAFGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKP 166
Cdd:PRK13632 82 rKKIGIIFQNPdNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNP 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16764581 167 RLLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALtMSDRIVVMRNGVIEQDGTPREIYEEPKNLFVA 245
Cdd:PRK13632 162 EIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSEGKLIAQGKPKEILNNKEILEKA 239
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
30-246 |
9.79e-36 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 131.85 E-value: 9.79e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 30 KEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAENRY-----VNTVFQSY-ALFPH 103
Cdd:PRK13640 20 KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWdirekVGIVFQNPdNQFVG 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 104 MTVFENVAFGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALDYKLR 183
Cdd:PRK13640 100 ATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGK 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 16764581 184 KQMQNELKALQRKLGITFVFVTHDQEEAlTMSDRIVVMRNGVIEQDGTPREIYEEPKNLFVAG 246
Cdd:PRK13640 180 EQILKLIRKLKKKNNLTVISITHDIDEA-NMADQVLVLDDGKLLAQGSPVEIFSKVEMLKEIG 241
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
39-240 |
1.92e-35 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 132.01 E-value: 1.92e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 39 TINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAE-----NRYVNTVFQS-YA-LFPHMTVFENVA 111
Cdd:PRK11308 37 TLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEaqkllRQKIQIVFQNpYGsLNPRKKVGQILE 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 112 FGLRMQKT-PAAEIAPRVTDALRMVQLE-EFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALDYKLRKQMQNE 189
Cdd:PRK11308 117 EPLLINTSlSAAERREKALAMMAKVGLRpEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNL 196
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 16764581 190 LKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNG-VIEQdGTPREIYEEPK 240
Cdd:PRK11308 197 MMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGrCVEK-GTKEQIFNNPR 247
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
23-241 |
2.20e-35 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 130.09 E-value: 2.20e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 23 ISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAEN-----------RYV 91
Cdd:PRK10619 11 LHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDgqlkvadknqlRLL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 92 NT----VFQSYALFPHMTVFENVAFG----LRMQKTPAAEiapRVTDALRMVQLEEFAQRK-PHQLSGGQQQRVAIARAV 162
Cdd:PRK10619 91 RTrltmVFQHFNLWSHMTVLENVMEApiqvLGLSKQEARE---RAVKYLAKVGIDERAQGKyPVHLSGGQQQRVSIARAL 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16764581 163 VNKPRLLLLDESLSALDYKLRKQMQNELKALQRKlGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYEEPKN 241
Cdd:PRK10619 168 AMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGNPQS 245
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
11-237 |
2.31e-35 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 131.47 E-value: 2.31e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 11 PRSLSPLVLLsGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDI-THVPAENR 89
Cdd:PRK13537 2 PMSVAPIDFR-NVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVpSRARHARQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 90 YVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLL 169
Cdd:PRK13537 81 RVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVL 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 16764581 170 LLDESLSALDYKLRKQMQNELKALQRKlGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYE 237
Cdd:PRK13537 161 VLDEPTTGLDPQARHLMWERLRSLLAR-GKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIE 227
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
17-239 |
2.87e-35 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 130.49 E-value: 2.87e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 17 LVLLSGISKSF-DGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIM---LDNQDITHVPAENRYVN 92
Cdd:PRK13644 1 MIRLENVSYSYpDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLvsgIDTGDFSKLQGIRKLVG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 93 TVFQS-YALFPHMTVFENVAFGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLL 171
Cdd:PRK13644 81 IVFQNpETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIF 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 16764581 172 DESLSALDYKLRKQMQNELKALQRKlGITFVFVTHDQEEaLTMSDRIVVMRNGVIEQDGTPREIYEEP 239
Cdd:PRK13644 161 DEVTSMLDPDSGIAVLERIKKLHEK-GKTIVYITHNLEE-LHDADRIIVMDRGKIVLEGEPENVLSDV 226
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
32-235 |
3.21e-35 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 135.65 E-value: 3.21e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 32 VISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAEN--RYVNTVFQSYALFPHmTVFEN 109
Cdd:COG4618 347 ILRGVSFSLEPGEVLGVIGPSGSGKSTLARLLVGVWPPTAGSVRLDGADLSQWDREElgRHIGYLPQDVELFDG-TIAEN 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 110 VAfglRMQKTPAAEiaprVTDALRMVQLEEFAQRKP-----------HQLSGGQQQRVAIARAVVNKPRLLLLDESLSAL 178
Cdd:COG4618 426 IA---RFGDADPEK----VVAAAKLAGVHEMILRLPdgydtrigeggARLSGGQRQRIGLARALYGDPRLVVLDEPNSNL 498
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 16764581 179 DYKLRKQMQNELKALqRKLGITFVFVTHDQeEALTMSDRIVVMRNGVIEQDGTPREI 235
Cdd:COG4618 499 DDEGEAALAAAIRAL-KARGATVVVITHRP-SLLAAVDKLLVLRDGRVQAFGPRDEV 553
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
40-253 |
4.59e-35 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 129.87 E-value: 4.59e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 40 INNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAEN--RYVNTVFQS-YALFPHMTVFENVAFGLRM 116
Cdd:PRK13648 32 IPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKlrKHIGIVFQNpDNQFVGSIVKYDVAFGLEN 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 117 QKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALDYKLRKQMQNELKALQRK 196
Cdd:PRK13648 112 HAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSE 191
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 16764581 197 LGITFVFVTHDQEEALTmSDRIVVMRNGVIEQDGTPREIYEEPKNLFVAG----FIGEINR 253
Cdd:PRK13648 192 HNITIISITHDLSEAME-ADHVIVMNKGTVYKEGTPTEIFDHAEELTRIGldlpFPIKINQ 251
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
20-226 |
4.99e-35 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 127.76 E-value: 4.99e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 20 LSGISKSF-DGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDIthvPAENRY--VNTVFQ 96
Cdd:cd03226 2 IENISFSYkKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPI---KAKERRksIGYVMQ 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 97 S--YALFPHmTVFENVAFGLRmqktPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDES 174
Cdd:cd03226 79 DvdYQLFTD-SVREELLLGLK----ELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEP 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 16764581 175 LSALDYKLRKQMQNELKALQRKlGITFVFVTHDQEEALTMSDRIVVMRNGVI 226
Cdd:cd03226 154 TSGLDYKNMERVGELIRELAAQ-GKAVIVITHDYEFLAKVCDRVLLLANGAI 204
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
20-267 |
6.17e-35 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 130.23 E-value: 6.17e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 20 LSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPA-------ENRyvn 92
Cdd:COG4152 4 LKGLTKRFGDKTAVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDSGEVLWDGEPLDPEDRrrigylpEER--- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 93 tvfqsyALFPHMTVFENVAF-----GLrmqktPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPR 167
Cdd:COG4152 81 ------GLYPKMKVGEQLVYlarlkGL-----SKAEAKRRADEWLERLGLGDRANKKVEELSKGNQQKVQLIAALLHDPE 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 168 LLLLDESLSALDYKLRKQMQNELKALQRKlGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYEE-PKNLFVAG 246
Cdd:COG4152 150 LLILDEPFSGLDPVNVELLKDVIRELAAK-GTTVIFSSHQMELVEELCDRIVIINKGRKVLSGSVDEIRRQfGRNTLRLE 228
|
250 260
....*....|....*....|....*
gi 16764581 247 FIGEI----NRFDATVIERLDEQRV 267
Cdd:COG4152 229 ADGDAgwlrALPGVTVVEEDGDGAE 253
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
23-224 |
7.27e-35 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 127.68 E-value: 7.27e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 23 ISKSF-DGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDIT-----HVPAENRYVNTVFQ 96
Cdd:PRK10908 7 VSKAYlGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITrlknrEVPFLRRQIGMIFQ 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 97 SYALFPHMTVFENVAFGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLS 176
Cdd:PRK10908 87 DHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTG 166
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 16764581 177 ALDYKLRKQMQNELKALQRkLGITFVFVTHDQEEALTMSDRIVVMRNG 224
Cdd:PRK10908 167 NLDDALSEGILRLFEEFNR-VGVTVLMATHDIGLISRRSYRMLTLSDG 213
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
17-239 |
7.73e-35 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 129.11 E-value: 7.73e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 17 LVLLSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDI-----THVPAENRYV 91
Cdd:PRK11831 7 LVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIpamsrSRLYTVRKRM 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 92 NTVFQSYALFPHMTVFENVAFGLRMQ-KTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLL 170
Cdd:PRK11831 87 SMLFQSGALFTDMNVFDNVAYPLREHtQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIM 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16764581 171 LDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYEEP 239
Cdd:PRK11831 167 FDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQANP 235
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
35-239 |
1.83e-34 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 129.99 E-value: 1.83e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 35 QLDLTINngefLTL--------LGPSGCGKTTVLRLIAGLETVDAGHIML------DNQDITHVPAENRYVNTVFQSYAL 100
Cdd:PRK11144 12 DLCLTVN----LTLpaqgitaiFGRSGAGKTSLINAISGLTRPQKGRIVLngrvlfDAEKGICLPPEKRRIGYVFQDARL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 101 FPHMTVFENVAFGlrMQKTPAAEIAprvtDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALDY 180
Cdd:PRK11144 88 FPHYKVRGNLRYG--MAKSMVAQFD----KIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDL 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 16764581 181 KLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYEEP 239
Cdd:PRK11144 162 PRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASS 220
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
20-226 |
2.37e-34 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 125.02 E-value: 2.37e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 20 LSGISKSFDGKE--VISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVpAENRY---VNTV 94
Cdd:cd03246 3 VENVSFRYPGAEppVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQW-DPNELgdhVGYL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 95 FQSYALFPHmTVFENVafglrmqktpaaeiaprvtdalrmvqleefaqrkphqLSGGQQQRVAIARAVVNKPRLLLLDES 174
Cdd:cd03246 82 PQDDELFSG-SIAENI-------------------------------------LSGGQRQRLGLARALYGNPRILVLDEP 123
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 16764581 175 LSALDYKLRKQMQNELKALqRKLGITFVFVTHdQEEALTMSDRIVVMRNGVI 226
Cdd:cd03246 124 NSHLDVEGERALNQAIAAL-KAAGATRIVIAH-RPETLASADRILVLEDGRV 173
|
|
| LPS_export_lptB |
TIGR04406 |
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ... |
22-240 |
2.73e-34 |
|
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ATP-binding cassette protein of an ABC transporter involved in lipopolysaccharide export. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 275199 [Multi-domain] Cd Length: 239 Bit Score: 126.62 E-value: 2.73e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 22 GISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAENRY---VNTVFQSY 98
Cdd:TIGR04406 6 NLIKSYKKRKVVNDVSLSVKSGEIVGLLGPNGAGKTTSFYMIVGLVRPDAGKILIDGQDITHLPMHERArlgIGYLPQEA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 99 ALFPHMTVFENVAFGL-RMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSA 177
Cdd:TIGR04406 86 SIFRKLTVEENIMAVLeIRKDLDRAEREERLEALLEEFQISHLRDNKAMSLSGGERRRVEIARALATNPKFILLDEPFAG 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 16764581 178 LDYKLRKQMQNELKAL-QRKLGitfVFVT-HDQEEALTMSDRIVVMRNGVIEQDGTPREIYEEPK 240
Cdd:TIGR04406 166 VDPIAVGDIKKIIKHLkERGIG---VLITdHNVRETLDICDRAYIISDGKVLAEGTPAEIVANEK 227
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
20-226 |
3.74e-34 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 125.47 E-value: 3.74e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 20 LSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDN--------QDITHVPAENryv 91
Cdd:cd03269 3 VENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGkpldiaarNRIGYLPEER--- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 92 ntvfqsyALFPHMTVFENVAFGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLL 171
Cdd:cd03269 80 -------GLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLIL 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 16764581 172 DESLSALDYKLRKQMQNELKALQRKlGITFVFVTHDQEEALTMSDRIVVMRNGVI 226
Cdd:cd03269 153 DEPFSGLDPVNVELLKDVIRELARA-GKTVILSTHQMELVEELCDRVLLLNKGRA 206
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
22-241 |
4.81e-34 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 126.57 E-value: 4.81e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 22 GISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGL-----ETVDAGHIMLDNQDITHVPAE--NRYVNTV 94
Cdd:PRK14247 8 DLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLielypEARVSGEVYLDGQDIFKMDVIelRRRVQMV 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 95 FQSYALFPHMTVFENVAFGLRMQK--TPAAEIAPRVTDALRMVQL-EEFAQR---KPHQLSGGQQQRVAIARAVVNKPRL 168
Cdd:PRK14247 88 FQIPNPIPNLSIFENVALGLKLNRlvKSKKELQERVRWALEKAQLwDEVKDRldaPAGKLSGGQQQRLCIARALAFQPEV 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 16764581 169 LLLDESLSALDYKLRKQMQNELKALQRKLgiTFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYEEPKN 241
Cdd:PRK14247 168 LLADEPTANLDPENTAKIESLFLELKKDM--TIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFTNPRH 238
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
23-238 |
4.93e-34 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 126.67 E-value: 4.93e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 23 ISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDA---GHI-MLDN---------QDITHVPAENR 89
Cdd:PRK09984 10 LAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKsagSHIeLLGRtvqregrlaRDIRKSRANTG 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 90 YVntvFQSYALFPHMTVFENVAFGlRMQKTP---------AAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIAR 160
Cdd:PRK09984 90 YI---FQQFNLVNRLSVLENVLIG-ALGSTPfwrtcfswfTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIAR 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 16764581 161 AVVNKPRLLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYEE 238
Cdd:PRK09984 166 ALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQFDNE 243
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
33-247 |
1.13e-33 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 126.36 E-value: 1.13e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 33 ISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDIThvpAEN-----RYVNTVFQSY-ALFPHMTV 106
Cdd:PRK13642 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLT---AENvwnlrRKIGMVFQNPdNQFVGATV 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 107 FENVAFGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALDYKLRKQM 186
Cdd:PRK13642 100 EDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEI 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 16764581 187 QNELKALQRKLGITFVFVTHDQEEALTmSDRIVVMRNGVIEQDGTPREIYEEPKNLFVAGF 247
Cdd:PRK13642 180 MRVIHEIKEKYQLTVLSITHDLDEAAS-SDRILVMKAGEIIKEAAPSELFATSEDMVEIGL 239
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
28-234 |
1.83e-33 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 124.26 E-value: 1.83e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 28 DGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAEN--RYVNTVFQSYALFpHMT 105
Cdd:cd03253 12 PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSlrRAIGVVPQDTVLF-NDT 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 106 VFENVAFGlrmqKTPAAEIAprVTDALRMVQLEEFAQRKPHQ-----------LSGGQQQRVAIARAVVNKPRLLLLDES 174
Cdd:cd03253 91 IGYNIRYG----RPDATDEE--VIEAAKAAQIHDKIMRFPDGydtivgerglkLSGGEKQRVAIARAILKNPPILLLDEA 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 175 LSALDYKLRKQMQNELKALQRklGITFVFVTHDQEEALTmSDRIVVMRNGVIEQDGTPRE 234
Cdd:cd03253 165 TSALDTHTEREIQAALRDVSK--GRTTIVIAHRLSTIVN-ADKIIVLKDGRIVERGTHEE 221
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
37-242 |
3.79e-33 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 125.13 E-value: 3.79e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 37 DLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDIT------HVPAENRYVNTVFQsyalFPHMTVFE-- 108
Cdd:PRK13634 27 NVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITagkknkKLKPLRKKVGIVFQ----FPEHQLFEet 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 109 ---NVAFGLRMQKTPAAEIAPRVTDALRMVQL-EEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALDYKLRK 184
Cdd:PRK13634 103 vekDICFGPMNFGVSEEDAKQKAREMIELVGLpEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRK 182
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 16764581 185 QMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYEEPKNL 242
Cdd:PRK13634 183 EMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFADPDEL 240
|
|
| type_I_sec_HlyB |
TIGR01846 |
type I secretion system ABC transporter, HlyB family; Type I protein secretion is a system in ... |
28-235 |
5.73e-33 |
|
type I secretion system ABC transporter, HlyB family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273831 [Multi-domain] Cd Length: 694 Bit Score: 130.25 E-value: 5.73e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 28 DGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHV-PAE-NRYVNTVFQSYALFPHmT 105
Cdd:TIGR01846 468 DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIAdPAWlRRQMGVVLQENVLFSR-S 546
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 106 VFENVAFGlrmqkTPAAEIApRVTDALRMVQLEEFAQRKPH-----------QLSGGQQQRVAIARAVVNKPRLLLLDES 174
Cdd:TIGR01846 547 IRDNIALC-----NPGAPFE-HVIHAAKLAGAHDFISELPQgyntevgekgaNLSGGQRQRIAIARALVGNPRILIFDEA 620
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 16764581 175 LSALDYKLRKQMQNELKALQRklGITFVFVTHdQEEALTMSDRIVVMRNGVIEQDGTPREI 235
Cdd:TIGR01846 621 TSALDYESEALIMRNMREICR--GRTVIIIAH-RLSTVRACDRIIVLEKGQIAESGRHEEL 678
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
28-235 |
7.99e-33 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 129.07 E-value: 7.99e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 28 DGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAEN--RYVNTVFQSYALFPHmT 105
Cdd:TIGR02203 343 RDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASlrRQVALVSQDVVLFND-T 421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 106 VFENVAFGlRMQKTPAAEIaprvTDALRMVQLEEFAQRKP---HQ--------LSGGQQQRVAIARAVVNKPRLLLLDES 174
Cdd:TIGR02203 422 IANNIAYG-RTEQADRAEI----ERALAAAYAQDFVDKLPlglDTpigengvlLSGGQRQRLAIARALLKDAPILILDEA 496
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 16764581 175 LSALDYKLRKQMQNELKALQRklGITFVFVTHdQEEALTMSDRIVVMRNGVIEQDGTPREI 235
Cdd:TIGR02203 497 TSALDNESERLVQAALERLMQ--GRTTLVIAH-RLSTIEKADRIVVMDDGRIVERGTHNEL 554
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
11-243 |
2.36e-32 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 127.13 E-value: 2.36e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 11 PRSLSPLVLLSGISKSF-----------DGKEVISQLDLTINNGEFLTLLGPSGCGKTT----VLRLIAGletvdAGHIM 75
Cdd:PRK15134 269 PEPASPLLDVEQLQVAFpirkgilkrtvDHNVVVKNISFTLRPGETLGLVGESGSGKSTtglaLLRLINS-----QGEIW 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 76 LDNQDITH------VPAENRyVNTVFQ--SYALFPHMTVFENVAFGLRM-QKT-PAAEIAPRVTDALRMVQLE-EFAQRK 144
Cdd:PRK15134 344 FDGQPLHNlnrrqlLPVRHR-IQVVFQdpNSSLNPRLNVLQIIEEGLRVhQPTlSAAQREQQVIAVMEEVGLDpETRHRY 422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 145 PHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNG 224
Cdd:PRK15134 423 PAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQG 502
|
250 260
....*....|....*....|
gi 16764581 225 -VIEQdGTPREIYEEPKNLF 243
Cdd:PRK15134 503 eVVEQ-GDCERVFAAPQQEY 521
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
15-221 |
3.67e-32 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 126.63 E-value: 3.67e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 15 SPLVLLSGISKSFDGK-EVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAENRY--V 91
Cdd:TIGR02857 319 ASSLEFSGVSVAYPGRrPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRdqI 398
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 92 NTVFQSYALFPHmTVFENVAFGLRMQktPAAEIAprvtDALRMVQLEEFAQRKP-----------HQLSGGQQQRVAIAR 160
Cdd:TIGR02857 399 AWVPQHPFLFAG-TIAENIRLARPDA--SDAEIR----EALERAGLDEFVAALPqgldtpigeggAGLSGGQAQRLALAR 471
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 16764581 161 AVVNKPRLLLLDESLSALDYKLRKQMQNELKALQRklGITFVFVTHDQEEALTMsDRIVVM 221
Cdd:TIGR02857 472 AFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQ--GRTVLLVTHRLALAALA-DRIVVL 529
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
28-233 |
3.70e-32 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 122.15 E-value: 3.70e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 28 DGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDIThvpAENRY-----VNTVFQSY--AL 100
Cdd:PRK13647 16 DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVN---AENEKwvrskVGLVFQDPddQV 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 101 FPhMTVFENVAFGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALDY 180
Cdd:PRK13647 93 FS-STVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDP 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 16764581 181 KLRKQMQNELKALQRKlGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPR 233
Cdd:PRK13647 172 RGQETLMEILDRLHNQ-GKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKS 223
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
43-241 |
5.66e-32 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 126.89 E-value: 5.66e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 43 GEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAEN-----RYVNTVFQS-YA-LFPHMTVFENVAFGLR 115
Cdd:PRK10261 350 GETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKlqalrRDIQFIFQDpYAsLDPRQTVGDSIMEPLR 429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 116 MQKT-PAAEIAPRVTDALRMVQLE-EFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALDYKLRKQMQNELKAL 193
Cdd:PRK10261 430 VHGLlPGKAAAARVAWLLERVGLLpEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDL 509
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 16764581 194 QRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYEEPKN 241
Cdd:PRK10261 510 QRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQH 557
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
28-235 |
1.93e-31 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 119.13 E-value: 1.93e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 28 DGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAE--NRYVNTVFQSYALFpHMT 105
Cdd:cd03252 13 DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAwlRRQVGVVLQENVLF-NRS 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 106 VFENVAFGlrmqkTPAAEIApRVTDALRMVQLEEFAQRKPH-----------QLSGGQQQRVAIARAVVNKPRLLLLDES 174
Cdd:cd03252 92 IRDNIALA-----DPGMSME-RVIEAAKLAGAHDFISELPEgydtivgeqgaGLSGGQRQRIAIARALIHNPRILIFDEA 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 16764581 175 LSALDYKLRKQMQNELKALQRklGITFVFVTHdQEEALTMSDRIVVMRNGVIEQDGTPREI 235
Cdd:cd03252 166 TSALDYESEHAIMRNMHDICA--GRTVIIIAH-RLSTVKNADRIIVMEKGRIVEQGSHDEL 223
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
23-234 |
3.64e-31 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 118.10 E-value: 3.64e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 23 ISKSFDGKE-VISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAEN--RYVNTVFQSYA 99
Cdd:cd03254 8 VNFSYDEKKpVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSlrSMIGVVLQDTF 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 100 LFPHmTVFENVAFGlrmqkTPAAEiAPRVTDALRMVQLEEFAQRKP-----------HQLSGGQQQRVAIARAVVNKPRL 168
Cdd:cd03254 88 LFSG-TIMENIRLG-----RPNAT-DEEVIEAAKEAGAHDFIMKLPngydtvlgengGNLSQGERQLLAIARAMLRDPKI 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 16764581 169 LLLDESLSALDYKLRKQMQNELKALQRklGITFVFVTHdQEEALTMSDRIVVMRNGVIEQDGTPRE 234
Cdd:cd03254 161 LILDEATSNIDTETEKLIQEALEKLMK--GRTSIIIAH-RLSTIKNADKILVLDDGKIIEEGTHDE 223
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
31-241 |
4.54e-31 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 118.41 E-value: 4.54e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 31 EVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDA-----GHIMLDNQDITHV---PAE-NRYVNTVFQSYALF 101
Cdd:PRK14267 18 HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEearveGEVRLFGRNIYSPdvdPIEvRREVGMVFQYPNPF 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 102 PHMTVFENVAFGLRMQK--TPAAEIAPRVTDALRMVQL-EEFAQR---KPHQLSGGQQQRVAIARAVVNKPRLLLLDESL 175
Cdd:PRK14267 98 PHLTIYDNVAIGVKLNGlvKSKKELDERVEWALKKAALwDEVKDRlndYPSNLSGGQRQRLVIARALAMKPKILLMDEPT 177
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 16764581 176 SALDYKLRKQMQNELKALQRKLgiTFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYEEPKN 241
Cdd:PRK14267 178 ANIDPVGTAKIEELLFELKKEY--TIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFENPEH 241
|
|
| COG4674 |
COG4674 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
9-173 |
5.32e-31 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443710 [Multi-domain] Cd Length: 250 Bit Score: 118.30 E-value: 5.32e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 9 NQPRSLSPLVLLSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPaEN 88
Cdd:COG4674 2 SLDTMHGPILYVEDLTVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTLMDVITGKTRPDSGSVLFGGTDLTGLD-EH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 89 RYVNT----VFQSYALFPHMTVFENVAFGLRMQKTP--------AAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRV 156
Cdd:COG4674 81 EIARLgigrKFQKPTVFEELTVFENLELALKGDRGVfaslfarlTAEERDRIEEVLETIGLTDKADRLAGLLSHGQKQWL 160
|
170
....*....|....*..
gi 16764581 157 AIARAVVNKPRLLLLDE 173
Cdd:COG4674 161 EIGMLLAQDPKLLLLDE 177
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
16-235 |
8.81e-31 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 121.10 E-value: 8.81e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 16 PLVLLSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAE--NRYVNT 93
Cdd:PRK09536 2 PMIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARaaSRRVAS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 94 VFQSYALFPHMTVFENVafglRMQKTP-------AAEIAPRVTD-ALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNK 165
Cdd:PRK09536 82 VPQDTSLSFEFDVRQVV----EMGRTPhrsrfdtWTETDRAAVErAMERTGVAQFADRPVTSLSGGERQRVLLARALAQA 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 16764581 166 PRLLLLDESLSALDykLRKQMQNelKALQRKL---GITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREI 235
Cdd:PRK09536 158 TPVLLLDEPTASLD--INHQVRT--LELVRRLvddGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADV 226
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
16-224 |
1.99e-30 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 121.67 E-value: 1.99e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 16 PLVLLSGISKSFDG----KEVisqlDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDIT-HVPAE--N 88
Cdd:COG3845 4 PALELRGITKRFGGvvanDDV----SLTVRPGEIHALLGENGAGKSTLMKILYGLYQPDSGEILIDGKPVRiRSPRDaiA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 89 RYVNTVFQSYALFPHMTVFENVAFGLRmqktPAAEIAPRVTDALRmvQLEEFAQR---------KPHQLSGGQQQRVAIA 159
Cdd:COG3845 80 LGIGMVHQHFMLVPNLTVAENIVLGLE----PTKGGRLDRKAARA--RIRELSERygldvdpdaKVEDLSVGEQQRVEIL 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 16764581 160 RAVVNKPRLLLLDESLSALDyklrKQMQNELKALQRKL---GITFVFVTHDQEEALTMSDRIVVMRNG 224
Cdd:COG3845 154 KALYRGARILILDEPTAVLT----PQEADELFEILRRLaaeGKSIIFITHKLREVMAIADRVTVLRRG 217
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
28-206 |
2.42e-30 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 121.84 E-value: 2.42e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 28 DGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHImldnqditHVPAENRyvnTVF---QSYalFPHM 104
Cdd:COG4178 374 DGRPLLEDLSLSLKPGERLLITGPSGSGKSTLLRAIAGLWPYGSGRI--------ARPAGAR---VLFlpqRPY--LPLG 440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 105 TVFENVAFGLRMQKTPAAEIAprvtDALRMVQLEEFAQR------KPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSAL 178
Cdd:COG4178 441 TLREALLYPATAEAFSDAELR----EALEAVGLGHLAERldeeadWDQVLSLGEQQRLAFARLLLHKPDWLFLDEATSAL 516
|
170 180
....*....|....*....|....*....
gi 16764581 179 DYKLRKQMqneLKALQRKL-GITFVFVTH 206
Cdd:COG4178 517 DEENEAAL---YQLLREELpGTTVISVGH 542
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
15-210 |
2.58e-30 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 115.58 E-value: 2.58e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 15 SPLVLLSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAEnRY---V 91
Cdd:PRK10247 5 SPLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPE-IYrqqV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 92 NTVFQSYALFPHmTVFENVAF--GLRMQKTPAAEIAprvTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLL 169
Cdd:PRK10247 84 SYCAQTPTLFGD-TVYDNLIFpwQIRNQQPDPAIFL---DDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVL 159
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 16764581 170 LLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEE 210
Cdd:PRK10247 160 LLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDE 200
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
30-238 |
2.62e-30 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 116.65 E-value: 2.62e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 30 KEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAenryvNTVFQSYALFP--HMT-- 105
Cdd:PRK11231 15 KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSS-----RQLARRLALLPqhHLTpe 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 106 ---VFENVAFGlrmqKTP--------AAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDES 174
Cdd:PRK11231 90 gitVRELVAYG----RSPwlslwgrlSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEP 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 16764581 175 LSALDYklrkQMQNELKALQRKL---GITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYEE 238
Cdd:PRK11231 166 TTYLDI----NHQVELMRLMRELntqGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTP 228
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
28-238 |
4.02e-30 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 116.87 E-value: 4.02e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 28 DGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITH----VPAENRYVNTVFQS--YALF 101
Cdd:PRK13636 17 DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYsrkgLMKLRESVGMVFQDpdNQLF 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 102 PhMTVFENVAFGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALDYK 181
Cdd:PRK13636 97 S-ASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPM 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 16764581 182 LRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYEE 238
Cdd:PRK13636 176 GVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 232
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
23-242 |
6.32e-30 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 116.72 E-value: 6.32e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 23 ISKSFDGK-----EVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHI--MLDNQDITHVPAEN------- 88
Cdd:PRK13651 8 IVKIFNKKlptelKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIewIFKDEKNKKKTKEKekvlekl 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 89 -----------------RYVNTVFQ--SYALFpHMTVFENVAFGLRMQKTPAAEIAPRVTDALRMVQL-EEFAQRKPHQL 148
Cdd:PRK13651 88 viqktrfkkikkikeirRRVGVVFQfaEYQLF-EQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLdESYLQRSPFEL 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 149 SGGQQQRVAIARAVVNKPRLLLLDESLSALDYKLRKQMQNELKALQrKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQ 228
Cdd:PRK13651 167 SGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLN-KQGKTIILVTHDLDNVLEWTKRTIFFKDGKIIK 245
|
250
....*....|....
gi 16764581 229 DGTPREIYEEPKNL 242
Cdd:PRK13651 246 DGDTYDILSDNKFL 259
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
30-242 |
6.54e-30 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 116.06 E-value: 6.54e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 30 KEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDIT--HVPAENRYVNTVFQSY--ALFPhMT 105
Cdd:PRK13652 17 KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITkeNIREVRKFVGLVFQNPddQIFS-PT 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 106 VFENVAFGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALDYKLRKQ 185
Cdd:PRK13652 96 VEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKE 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 16764581 186 MQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYEEPKNL 242
Cdd:PRK13652 176 LIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPDLL 232
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
22-238 |
2.19e-29 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 118.75 E-value: 2.19e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 22 GISKSFDGkevisqLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIML----DNQDITHVPAENR-----YVN 92
Cdd:TIGR03269 295 GVVKAVDN------VSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVrvgdEWVDMTKPGPDGRgrakrYIG 368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 93 TVFQSYALFPHMTVFENV--AFGLRMQKTPAAEIAPRVtdaLRMV-----QLEEFAQRKPHQLSGGQQQRVAIARAVVNK 165
Cdd:TIGR03269 369 ILHQEYDLYPHRTVLDNLteAIGLELPDELARMKAVIT---LKMVgfdeeKAEEILDKYPDELSEGERHRVALAQVLIKE 445
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 16764581 166 PRLLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYEE 238
Cdd:TIGR03269 446 PRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVEE 518
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
36-234 |
2.39e-29 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 119.15 E-value: 2.39e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 36 LDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAEN--RYVNTVFQSYALFpHMTVFENVAFG 113
Cdd:COG5265 377 VSFEVPAGKTVAIVGPSGAGKSTLARLLFRFYDVTSGRILIDGQDIRDVTQASlrAAIGIVPQDTVLF-NDTIAYNIAYG 455
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 114 lRMQKTPAAeiaprVTDALRMVQLEEFAQRKPHQ-----------LSGGQQQRVAIARAVVNKPRLLLLDESLSALDYKL 182
Cdd:COG5265 456 -RPDASEEE-----VEAAARAAQIHDFIESLPDGydtrvgerglkLSGGEKQRVAIARTLLKNPPILIFDEATSALDSRT 529
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 16764581 183 RKQMQNELKALQRklGITFVFVTH------DqeealtmSDRIVVMRNGVIEQDGTPRE 234
Cdd:COG5265 530 ERAIQAALREVAR--GRTTLVIAHrlstivD-------ADEILVLEAGRIVERGTHAE 578
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
15-241 |
2.92e-29 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 113.72 E-value: 2.92e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 15 SPLVLLSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGL-----ETVDAGHIMLDNQDI----THVP 85
Cdd:PRK14239 3 EPILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMndlnpEVTITGSIVYNGHNIysprTDTV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 86 AENRYVNTVFQSYALFPhMTVFENVAFGLRMQKTPAAEIAPR-VTDALRMVQLEEFAQRKPHQ----LSGGQQQRVAIAR 160
Cdd:PRK14239 83 DLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEaVEKSLKGASIWDEVKDRLHDsalgLSGGQQQRVCIAR 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 161 AVVNKPRLLLLDESLSALDYKLRKQMQNELKALQRKLgiTFVFVTHDQEEALTMSDRIVVMRNG-VIEQDGTpREIYEEP 239
Cdd:PRK14239 162 VLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDY--TMLLVTRSMQQASRISDRTGFFLDGdLIEYNDT-KQMFMNP 238
|
..
gi 16764581 240 KN 241
Cdd:PRK14239 239 KH 240
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
14-239 |
3.01e-29 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 113.98 E-value: 3.01e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 14 LSPLVLLSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDA-----GHIMLDNQDI----THV 84
Cdd:PRK14258 4 LIPAIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESevrveGRVEFFNQNIyerrVNL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 85 PAENRYVNTVFQSYALFPhMTVFENVAFGLRMQK-TPAAEIAPRVTDALRMVQLEEFAQRKPHQ----LSGGQQQRVAIA 159
Cdd:PRK14258 84 NRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGwRPKLEIDDIVESALKDADLWDEIKHKIHKsaldLSGGQQQRLCIA 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 160 RAVVNKPRLLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVM-----RNGVIEQDGTPRE 234
Cdd:PRK14258 163 RALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFkgnenRIGQLVEFGLTKK 242
|
....*
gi 16764581 235 IYEEP 239
Cdd:PRK14258 243 IFNSP 247
|
|
| type_I_sec_PrtD |
TIGR01842 |
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in ... |
30-235 |
8.86e-29 |
|
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 200134 [Multi-domain] Cd Length: 544 Bit Score: 117.06 E-value: 8.86e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 30 KEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAEN--RYVNTVFQSYALFPHmTVF 107
Cdd:TIGR01842 331 KPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETfgKHIGYLPQDVELFPG-TVA 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 108 ENVAfglRMQKTPAAEiapRVTDALRMVQLEEFAQRKPH-----------QLSGGQQQRVAIARAVVNKPRLLLLDESLS 176
Cdd:TIGR01842 410 ENIA---RFGENADPE---KIIEAAKLAGVHELILRLPDgydtvigpggaTLSGGQRQRIALARALYGDPKLVVLDEPNS 483
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 16764581 177 ALDYKLRKQMQNELKALQRKlGITFVFVTHdQEEALTMSDRIVVMRNGVIEQDGTPREI 235
Cdd:TIGR01842 484 NLDEEGEQALANAIKALKAR-GITVVVITH-RPSLLGCVDKILVLQDGRIARFGERDEV 540
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
14-234 |
1.78e-28 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 116.75 E-value: 1.78e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 14 LSPLVLLSGISKSFDGKE----VISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAE-- 87
Cdd:PRK10535 1 MTALLELKDIRRSYPSGEeqveVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADal 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 88 ----NRYVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVV 163
Cdd:PRK10535 81 aqlrREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALM 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 16764581 164 NKPRLLLLDESLSALDYKLRKQMQNELKALQRKlGITFVFVTHDQEEAlTMSDRIVVMRNGVIEQDGTPRE 234
Cdd:PRK10535 161 NGGQVILADEPTGALDSHSGEEVMAILHQLRDR-GHTVIIVTHDPQVA-AQAERVIEIRDGEIVRNPPAQE 229
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
15-226 |
1.85e-28 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 115.92 E-value: 1.85e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 15 SPLVLLSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITH---VPAENRYV 91
Cdd:PRK15439 9 PPLLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARltpAKAHQLGI 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 92 NTVFQSYALFPHMTVFENVAFGLrmQKTPAAEiaPRVTDALRMVQleefAQRKPHQLSG----GQQQRVAIARAVVNKPR 167
Cdd:PRK15439 89 YLVPQEPLLFPNLSVKENILFGL--PKRQASM--QKMKQLLAALG----CQLDLDSSAGslevADRQIVEILRGLMRDSR 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 16764581 168 LLLLDESLSALDYKLRKQMQNELKALQRKlGITFVFVTHDQEEALTMSDRIVVMRNGVI 226
Cdd:PRK15439 161 ILILDEPTASLTPAETERLFSRIRELLAQ-GVGIVFISHKLPEIRQLADRISVMRDGTI 218
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
27-238 |
1.89e-28 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 112.15 E-value: 1.89e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 27 FDGKeVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITH------VPAENRYVNTVFQsyal 100
Cdd:PRK13649 18 FEGR-ALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITStsknkdIKQIRKKVGLVFQ---- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 101 FPHMTVFE-----NVAFGLRMQKTPAAEIAPRVTDALRMVQL-EEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDES 174
Cdd:PRK13649 93 FPESQLFEetvlkDVAFGPQNFGVSQEEAEALAREKLALVGIsESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEP 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 16764581 175 LSALDYKLRKQMQNELKALQRKlGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYEE 238
Cdd:PRK13649 173 TAGLDPKGRKELMTLFKKLHQS-GMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQD 235
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
30-239 |
2.22e-28 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 116.75 E-value: 2.22e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 30 KEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVpaENRYVNT----VFQSYALFPHmT 105
Cdd:TIGR00958 494 VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQY--DHHYLHRqvalVGQEPVLFSG-S 570
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 106 VFENVAFGLRmqKTPAAEIaprvTDALRMVQLEEFAQRKPH-----------QLSGGQQQRVAIARAVVNKPRLLLLDES 174
Cdd:TIGR00958 571 VRENIAYGLT--DTPDEEI----MAAAKAANAHDFIMEFPNgydtevgekgsQLSGGQKQRIAIARALVRKPRVLILDEA 644
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 16764581 175 LSALDyklrKQMQNELKALQRKLGITFVFVTHdQEEALTMSDRIVVMRNGVIEQDGTPREIYEEP 239
Cdd:TIGR00958 645 TSALD----AECEQLLQESRSRASRTVLLIAH-RLSTVERADQILVLKKGSVVEMGTHKQLMEDQ 704
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
28-206 |
2.31e-28 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 109.89 E-value: 2.31e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 28 DGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAEnryvntvFQSYALF------ 101
Cdd:PRK13538 12 DERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDE-------YHQDLLYlghqpg 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 102 --PHMTVFENVAFGLRMQKTPAAEiapRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALD 179
Cdd:PRK13538 85 ikTELTALENLRFYQRLHGPGDDE---ALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAID 161
|
170 180
....*....|....*....|....*..
gi 16764581 180 YKLRKQMQNELKALQRKLGITfVFVTH 206
Cdd:PRK13538 162 KQGVARLEALLAQHAEQGGMV-ILTTH 187
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
16-207 |
2.41e-28 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 115.92 E-value: 2.41e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 16 PLVLLSGISKSFDG-KEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPA-ENRYVNT 93
Cdd:TIGR02868 333 PTLELRDLSAGYPGaPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQdEVRRRVS 412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 94 VF-QSYALFpHMTVFENVAFGlRMQKTPAAeiaprVTDALRMVQLEEFAQRKPH-----------QLSGGQQQRVAIARA 161
Cdd:TIGR02868 413 VCaQDAHLF-DTTVRENLRLA-RPDATDEE-----LWAALERVGLADWLRALPDgldtvlgeggaRLSGGERQRLALARA 485
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 16764581 162 VVNKPRLLLLDESLSALDYKLRKQMQNEL-KALQRKlgiTFVFVTHD 207
Cdd:TIGR02868 486 LLADAPILLLDEPTEHLDAETADELLEDLlAALSGR---TVVLITHH 529
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
29-224 |
2.56e-28 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 110.64 E-value: 2.56e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 29 GKEVISQL---DLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAENR------YVNTVFQSYA 99
Cdd:PRK10584 19 GEHELSILtgvELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARaklrakHVGFVFQSFM 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 100 LFPHMTVFENVAFGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALD 179
Cdd:PRK10584 99 LIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLD 178
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 16764581 180 YKLRKQMQNELKALQRKLGITFVFVTHDQEEAlTMSDRIVVMRNG 224
Cdd:PRK10584 179 RQTGDKIADLLFSLNREHGTTLILVTHDLQLA-ARCDRRLRLVNG 222
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
28-252 |
3.20e-28 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 110.91 E-value: 3.20e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 28 DGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGL-ETVDA-----GHIMLDNQDITHVPA--ENRYVNTVFQSYA 99
Cdd:PRK14246 21 NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLiEIYDSkikvdGKVLYFGKDIFQIDAikLRKEVGMVFQQPN 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 100 LFPHMTVFENVAFGLRMQKTPAA-EIAPRVTDALRMVQL-EEFAQR---KPHQLSGGQQQRVAIARAVVNKPRLLLLDES 174
Cdd:PRK14246 101 PFPHLSIYDNIAYPLKSHGIKEKrEIKKIVEECLRKVGLwKEVYDRlnsPASQLSGGQQQRLTIARALALKPKVLLMDEP 180
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16764581 175 LSALDYKLRKQMQNELKALQRKlgITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYEEPKNLFVAGF-IGEIN 252
Cdd:PRK14246 181 TSMIDIVNSQAIEKLITELKNE--IAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSPKNELTEKYvIGRIS 257
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
13-236 |
3.53e-28 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 111.64 E-value: 3.53e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 13 SLSPLVLLSGISKSFDGK-----EVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDN-------QD 80
Cdd:PRK13645 2 DFSKDIILDNVSYTYAKKtpfefKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDyaipanlKK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 81 ITHVPAENRYVNTVFQ--SYALFPHmTVFENVAFGLRMQKTPAAEIAPRVTDALRMVQL-EEFAQRKPHQLSGGQQQRVA 157
Cdd:PRK13645 82 IKEVKRLRKEIGLVFQfpEYQLFQE-TIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLpEDYVKRSPFELSGGQKRRVA 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16764581 158 IARAVVNKPRLLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIY 236
Cdd:PRK13645 161 LAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIF 239
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
29-235 |
4.97e-28 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 110.85 E-value: 4.97e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 29 GKEVISQ-LDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAEN--RYVNTVFQSYALFPHMT 105
Cdd:PRK10253 18 GKYTVAEnLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEvaRRIGLLAQNATTPGDIT 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 106 VFENVAFGlRMQKTPA-----AEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALDY 180
Cdd:PRK10253 98 VQELVARG-RYPHQPLftrwrKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDI 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 16764581 181 KLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREI 235
Cdd:PRK10253 177 SHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEI 231
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
26-221 |
1.38e-27 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 107.32 E-value: 1.38e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 26 SFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHImldnqdiTHVPAenRYVNTVFQSYAL---FP 102
Cdd:NF040873 1 GYGGRPVLHGVDLTIPAGSLTAVVGPNGSGKSTLLKVLAGVLRPTSGTV-------RRAGG--ARVAYVPQRSEVpdsLP 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 103 hMTVFENVAFGL----RMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSAL 178
Cdd:NF040873 72 -LTVRDLVAMGRwarrGLWRRLTRDDRAAVDDALERVGLADLAGRQLGELSGGQRQRALLAQGLAQEADLLLLDEPTTGL 150
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 16764581 179 DYKLRKQMQNELKALQRKlGITFVFVTHDQEEALTmSDRIVVM 221
Cdd:NF040873 151 DAESRERIIALLAEEHAR-GATVVVVTHDLELVRR-ADPCVLL 191
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
31-256 |
2.63e-27 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 108.72 E-value: 2.63e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 31 EVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHvpAENRY----VNTVFQ--SYALFPHM 104
Cdd:PRK15112 27 EAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHF--GDYSYrsqrIRMIFQdpSTSLNPRQ 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 105 TVFENVAFGLRMQ-KTPAAEIAPRVTDALRMVQL-EEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALDYKL 182
Cdd:PRK15112 105 RISQILDFPLRLNtDLEPEQREKQIIETLRQVGLlPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSM 184
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16764581 183 RKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYEEP-----KNLfVAGFIGEINRFDA 256
Cdd:PRK15112 185 RSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLASPlheltKRL-IAGHFGEALTADA 262
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
6-230 |
4.07e-27 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 107.23 E-value: 4.07e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 6 KLNNQPRSLSPLVLLSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQdITHVP 85
Cdd:cd03220 11 PTYKGGSSSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGR-VSSLL 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 86 AenryVNTVFQsyalfPHMTVFENVAFGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNK 165
Cdd:cd03220 90 G----LGGGFN-----PELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALE 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 16764581 166 PRLLLLDESLSALDYKLRKQMQNELKALQRKlGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDG 230
Cdd:cd03220 161 PDILLIDEVLAVGDAAFQEKCQRRLRELLKQ-GKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
28-179 |
5.77e-27 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 105.90 E-value: 5.77e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 28 DGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAE-NRYVNTVFQSYALFPHMTV 106
Cdd:TIGR01189 11 GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTPLAEQRDEpHENILYLGHLPGLKPELSA 90
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 16764581 107 FENVAFGLRMQKTPAAEIaprvTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALD 179
Cdd:TIGR01189 91 LENLHFWAAIHGGAQRTI----EDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRRPLWILDEPTTALD 159
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
23-235 |
7.49e-27 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 106.90 E-value: 7.49e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 23 ISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAENRY---VNTVFQSYA 99
Cdd:PRK10895 9 LAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARArrgIGYLPQEAS 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 100 LFPHMTVFENVAFGLRMQKTPAAEI-APRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSAL 178
Cdd:PRK10895 89 IFRRLSVYDNLMAVLQIRDDLSAEQrEDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGV 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 16764581 179 DYKLRKQMQNELKALqRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREI 235
Cdd:PRK10895 169 DPISVIDIKRIIEHL-RDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEI 224
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
21-247 |
1.12e-26 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 107.02 E-value: 1.12e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 21 SGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITH----VPAENRYVNTVFQ 96
Cdd:PRK13638 5 SDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYskrgLLALRQQVATVFQ 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 97 SyalfPHMTVF-----ENVAFGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLL 171
Cdd:PRK13638 85 D----PEQQIFytdidSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLL 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 16764581 172 DESLSALDYKLRKQMQNELKALQRKlGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYEEPKNLFVAGF 247
Cdd:PRK13638 161 DEPTAGLDPAGRTQMIAIIRRIVAQ-GNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFACTEAMEQAGL 235
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
15-224 |
1.12e-26 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 105.98 E-value: 1.12e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 15 SPLVLLSGISKSF-----DGKE--VISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQ----DITH 83
Cdd:COG4778 2 TTLLEVENLSKTFtlhlqGGKRlpVLDGVSFSVAAGECVALTGPSGAGKSTLLKCIYGNYLPDSGSILVRHDggwvDLAQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 84 vpAENRYV-----NT---VFQSYALFPHMTVFENVAFGLRMQKTPAAEIAPRVTDALRMVQL-EEFAQRKPHQLSGGQQQ 154
Cdd:COG4778 82 --ASPREIlalrrRTigyVSQFLRVIPRVSALDVVAEPLLERGVDREEARARARELLARLNLpERLWDLPPATFSGGEQQ 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 16764581 155 RVAIARAVVNKPRLLLLDESLSALDYKLR---KQMQNELKAlqrkLGITFVFVTHDQEEALTMSDRIVVMRNG 224
Cdd:COG4778 160 RVNIARGFIADPPLLLLDEPTASLDAANRavvVELIEEAKA----RGTAIIGIFHDEEVREAVADRVVDVTPF 228
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
16-236 |
2.13e-26 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 106.16 E-value: 2.13e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 16 PLVLLSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVP------AENR 89
Cdd:PRK11701 5 PLLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDlyalseAERR 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 90 yvnTVFQSYALFPHmtvfENVAFGLRMQKTPAAEIAPRV---------------TDALRMVQLEefAQR---KPHQLSGG 151
Cdd:PRK11701 85 ---RLLRTEWGFVH----QHPRDGLRMQVSAGGNIGERLmavgarhygdirataGDWLERVEID--AARiddLPTTFSGG 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 152 QQQRVAIARAVVNKPRLLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNG-VIEQDG 230
Cdd:PRK11701 156 MQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGrVVESGL 235
|
250
....*....|..
gi 16764581 231 T------PREIY 236
Cdd:PRK11701 236 TdqvlddPQHPY 247
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
14-246 |
3.47e-26 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 104.96 E-value: 3.47e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 14 LSPLVLLSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAEN---RY 90
Cdd:PRK11614 2 EKVMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKimrEA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 91 VNTVFQSYALFPHMTVFENVAF-GLRMQKTPAAEIAPRVTDALRMVQlEEFAQRKpHQLSGGQQQRVAIARAVVNKPRLL 169
Cdd:PRK11614 82 VAIVPEGRRVFSRMTVEENLAMgGFFAERDQFQERIKWVYELFPRLH-ERRIQRA-GTMSGGEQQMLAIGRALMSQPRLL 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16764581 170 LLDESLSALDYKLRKQMQNELKALqRKLGITFVFVTHDQEEALTMSDRIVVMRNG--VIEQDGTPREIYEEPKNLFVAG 246
Cdd:PRK11614 160 LLDEPSLGLAPIIIQQIFDTIEQL-REQGMTIFLVEQNANQALKLADRGYVLENGhvVLEDTGDALLANEAVRSAYLGG 237
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
10-238 |
3.97e-26 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 109.38 E-value: 3.97e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 10 QPRSLSPLVL-LSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIML-DNQDITHVPAE 87
Cdd:COG0488 307 PPERLGKKVLeLEGLSKSYGDKTLLDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAGELEPDSGTVKLgETVKIGYFDQH 386
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 88 NRYVNtvfqsyalfPHMTVFENVafglrmqktpaAEIAPRVTDALRMVQLEEF-----AQRKP-HQLSGGQQQRVAIARA 161
Cdd:COG0488 387 QEELD---------PDKTVLDEL-----------RDGAPGGTEQEVRGYLGRFlfsgdDAFKPvGVLSGGEKARLALAKL 446
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 162 VVNKPRLLLLDE--------SLSALdyklrkqmqneLKALQRKLGiTFVFVTHDQE--EALTmsDRIVVMRNG-VIEQDG 230
Cdd:COG0488 447 LLSPPNVLLLDEptnhldieTLEAL-----------EEALDDFPG-TVLLVSHDRYflDRVA--TRILEFEDGgVREYPG 512
|
....*...
gi 16764581 231 TpreiYEE 238
Cdd:COG0488 513 G----YDD 516
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
36-224 |
5.78e-26 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 102.90 E-value: 5.78e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 36 LDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDIT-------------HVPaENRyvntvfQSYALFP 102
Cdd:cd03215 19 VSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTrrsprdairagiaYVP-EDR------KREGLVL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 103 HMTVFENVAFglrmqktpaaeiaprvtdalrmvqleefaqrkPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALDYKL 182
Cdd:cd03215 92 DLSVAENIAL--------------------------------SSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGA 139
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 16764581 183 RKQMQNELKALQRKlGITFVFVTHDQEEALTMSDRIVVMRNG 224
Cdd:cd03215 140 KAEIYRLIRELADA-GKAVLLISSELDELLGLCDRILVMYEG 180
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
15-251 |
1.06e-25 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 104.79 E-value: 1.06e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 15 SPLVLLSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGH-----IMLDNQDITH---VPA 86
Cdd:PRK14271 19 APAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYrysgdVLLGGRSIFNyrdVLE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 87 ENRYVNTVFQSYALFPhMTVFENVAFGLRMQK-TPAAEI----APRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARA 161
Cdd:PRK14271 99 FRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKlVPRKEFrgvaQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLART 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 162 VVNKPRLLLLDESLSALDYKLRKQMQNELKALQRKLgiTFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYEEPKN 241
Cdd:PRK14271 178 LAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRL--TVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSSPKH 255
|
250
....*....|....
gi 16764581 242 L----FVAGFIGEI 251
Cdd:PRK14271 256 AetarYVAGLSGDV 269
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
19-238 |
1.37e-25 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 103.62 E-value: 1.37e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 19 LLSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHI--------MLDnqdithvpaenry 90
Cdd:COG1134 28 LLRRRRTRREEFWALKDVSFEVERGESVGIIGRNGAGKSTLLKLIAGILEPTSGRVevngrvsaLLE------------- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 91 VNTVFQsyalfPHMTVFENVAFGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLL 170
Cdd:COG1134 95 LGAGFH-----PELTGRENIYLNGRLLGLSRKEIDEKFDEIVEFAELGDFIDQPVKTYSSGMRARLAFAVATAVDPDILL 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 16764581 171 LDESLSALDYKLRKQMQNELKALQRKlGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYEE 238
Cdd:COG1134 170 VDEVLAVGDAAFQKKCLARIRELRES-GRTVIFVSHSMGAVRRLCDRAIWLEKGRLVMDGDPEEVIAA 236
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
8-228 |
1.39e-25 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 107.99 E-value: 1.39e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 8 NNQPRSLSPLVLLSGISKSFDGKE--VISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVP 85
Cdd:PRK11160 329 TSTAAADQVSLTLNNVSFTYPDQPqpVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYS 408
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 86 AEN--RYVNTVFQSYALFPHmTVFENvafgLRMQKTPAAEiaPRVTDALRMVQLEEFAQRKP----------HQLSGGQQ 153
Cdd:PRK11160 409 EAAlrQAISVVSQRVHLFSA-TLRDN----LLLAAPNASD--EALIEVLQQVGLEKLLEDDKglnawlgeggRQLSGGEQ 481
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 16764581 154 QRVAIARAVVNKPRLLLLDESLSALDYKLRKQ-MQNELKALQRKlgiTFVFVTHdQEEALTMSDRIVVMRNG-VIEQ 228
Cdd:PRK11160 482 RRLGIARALLHDAPLLLLDEPTEGLDAETERQiLELLAEHAQNK---TVLMITH-RLTGLEQFDRICVMDNGqIIEQ 554
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
29-179 |
2.41e-25 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 101.87 E-value: 2.41e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 29 GKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLD--NQDITHVPAENRYV---NtvfqsyALFPH 103
Cdd:PRK13539 14 GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDggDIDDPDVAEACHYLghrN------AMKPA 87
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 16764581 104 MTVFENVAFGLRMQKTPAAEIAprvtDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALD 179
Cdd:PRK13539 88 LTVAENLEFWAAFLGGEELDIA----AALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALD 159
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
30-231 |
2.70e-25 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 107.10 E-value: 2.70e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 30 KEVISQLDLTINNGEFLTLLGPSGCGKT----TVLRLIAGLETV-DAGHIMLDNQDITHVPAE-------NRyVNTVFQS 97
Cdd:PRK15134 22 RTVVNDVSLQIEAGETLALVGESGSGKSvtalSILRLLPSPPVVyPSGDIRFHGESLLHASEQtlrgvrgNK-IAMIFQE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 98 --YALFPHMTV----FENVAFGLRMQKTPA-AEIaprvTDALRMVQLEEFAQRK---PHQLSGGQQQRVAIARAVVNKPR 167
Cdd:PRK15134 101 pmVSLNPLHTLekqlYEVLSLHRGMRREAArGEI----LNCLDRVGIRQAAKRLtdyPHQLSGGERQRVMIAMALLTRPE 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 16764581 168 LLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNG-VIEQDGT 231
Cdd:PRK15134 177 LLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGrCVEQNRA 241
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
23-237 |
4.39e-25 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 106.43 E-value: 4.39e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 23 ISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETV--DAGHIM------------------------- 75
Cdd:TIGR03269 6 LTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYepTSGRIIyhvalcekcgyverpskvgepcpvc 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 76 ---LDNQDI-------THVPAENRYVNTVFQ-SYALFPHMTVFENVAFGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRK 144
Cdd:TIGR03269 86 ggtLEPEEVdfwnlsdKLRRRIRKRIAIMLQrTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHI 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 145 PHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNG 224
Cdd:TIGR03269 166 ARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENG 245
|
250
....*....|...
gi 16764581 225 VIEQDGTPREIYE 237
Cdd:TIGR03269 246 EIKEEGTPDEVVA 258
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
33-256 |
5.14e-25 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 103.65 E-value: 5.14e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 33 ISQLDLTINNGEFLTLLGPSGCGKT-TVLRL---------IAGLETVDAGHIM-LDNQDITHVPAENryVNTVFQS--YA 99
Cdd:PRK09473 32 VNDLNFSLRAGETLGIVGESGSGKSqTAFALmgllaangrIGGSATFNGREILnLPEKELNKLRAEQ--ISMIFQDpmTS 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 100 LFPHMTVFENVAFGL----RMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESL 175
Cdd:PRK09473 110 LNPYMRVGEQLMEVLmlhkGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPT 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 176 SALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYEEPKNLFVAGFIGEINRFD 255
Cdd:PRK09473 190 TALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDVFYQPSHPYSIGLLNAVPRLD 269
|
.
gi 16764581 256 A 256
Cdd:PRK09473 270 A 270
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
30-242 |
1.02e-24 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 102.17 E-value: 1.02e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 30 KEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHvPAENRYVNTVFQSYAL---FPHMTV 106
Cdd:PRK13646 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITH-KTKDKYIRPVRKRIGMvfqFPESQL 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 107 FEN-----VAFGLRMQKTPAAEIAPRVTDALRMVQLE-EFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALDY 180
Cdd:PRK13646 99 FEDtvereIIFGPKNFKMNLDEVKNYAHRLLMDLGFSrDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDP 178
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 16764581 181 KLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYEEPKNL 242
Cdd:PRK13646 179 QSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDKKKL 240
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
7-235 |
1.09e-24 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 101.40 E-value: 1.09e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 7 LNNQPRSLSPLVLLSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDIT--HV 84
Cdd:PRK10575 1 MQEYTNHSDTTFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLEswSS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 85 PAENRYVNTVFQSYALFPHMTVFENVAFGlrmqKTP--------AAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRV 156
Cdd:PRK10575 81 KAFARKVAYLPQQLPAAEGMTVRELVAIG----RYPwhgalgrfGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRA 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16764581 157 AIARAVVNKPRLLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREI 235
Cdd:PRK10575 157 WIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEL 235
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
28-179 |
1.19e-24 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 99.87 E-value: 1.19e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 28 DGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQdithvpAENRYVNTVFQSYALFPH---- 103
Cdd:cd03231 11 DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGG------PLDFQRDSIARGLLYLGHapgi 84
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16764581 104 ---MTVFENVAFGLRMQKTPAAEiaprvtDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALD 179
Cdd:cd03231 85 kttLSVLENLRFWHADHSDEQVE------EALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALD 157
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
30-242 |
1.57e-24 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 101.44 E-value: 1.57e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 30 KEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDIT------HVPAENRYVNTVFQsyalFPH 103
Cdd:PRK13641 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITpetgnkNLKKLRKKVSLVFQ----FPE 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 104 MTVFEN-----VAFGLRMQKTPAAEIAPRVTDALRMVQL-EEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSA 177
Cdd:PRK13641 96 AQLFENtvlkdVEFGPKNFGFSEDEAKEKALKWLKKVGLsEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAG 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 16764581 178 LDYKLRKQMQNELKALQRKlGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYEEPKNL 242
Cdd:PRK13641 176 LDPEGRKEMMQLFKDYQKA-GHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFSDKEWL 239
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
36-238 |
3.52e-24 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 100.58 E-value: 3.52e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 36 LDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAEN------RYVNTVFQsyalFPHMTVFE- 108
Cdd:PRK13643 25 IDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKeikpvrKKVGVVFQ----FPESQLFEe 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 109 ----NVAFGLR---MQKTPAAEIAprvTDALRMVQL-EEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALDY 180
Cdd:PRK13643 101 tvlkDVAFGPQnfgIPKEKAEKIA---AEKLEMVGLaDEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDP 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 16764581 181 KLRKQMQNELKALQRKlGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYEE 238
Cdd:PRK13643 178 KARIEMMQLFESIHQS-GQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQE 234
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
10-231 |
5.70e-24 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 103.50 E-value: 5.70e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 10 QPRSLSPLVLLSGISKSFDGK-EVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAEN 88
Cdd:PRK13657 327 DLGRVKGAVEFDDVSFSYDNSrQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRAS 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 89 --RYVNTVFQSYALFpHMTVFENvafgLRMQKTPAAEiaPRVTDALRMVQLEEFAQRKPH-----------QLSGGQQQR 155
Cdd:PRK13657 407 lrRNIAVVFQDAGLF-NRSIEDN----IRVGRPDATD--EEMRAAAERAQAHDFIERKPDgydtvvgergrQLSGGERQR 479
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 16764581 156 VAIARAVVNKPRLLLLDESLSALDYKLRKQMQNELKALqRKLGITFVfVTHdQEEALTMSDRIVVMRNGVIEQDGT 231
Cdd:PRK13657 480 LAIARALLKDPPILILDEATSALDVETEAKVKAALDEL-MKGRTTFI-IAH-RLSTVRNADRILVFDNGRVVESGS 552
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
17-224 |
5.72e-24 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 102.98 E-value: 5.72e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 17 LVLLSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLE---TVDaGHIMLDNQDI--THV-PAENRY 90
Cdd:TIGR02633 1 LLEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYphgTWD-GEIYWSGSPLkaSNIrDTERAG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 91 VNTVFQSYALFPHMTVFENVAFG----LRMQKTPAAEIAPRVTDALRMVQLEEFAQRKP-HQLSGGQQQRVAIARAVVNK 165
Cdd:TIGR02633 80 IVIIHQELTLVPELSVAENIFLGneitLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPvGDYGGGQQQLVEIAKALNKQ 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 16764581 166 PRLLLLDESLSALDYKLRKQMQNELKALQRKlGITFVFVTHDQEEALTMSDRIVVMRNG 224
Cdd:TIGR02633 160 ARLLILDEPSSSLTEKETEILLDIIRDLKAH-GVACVYISHKLNEVKAVCDTICVIRDG 217
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
24-224 |
6.52e-24 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 97.62 E-value: 6.52e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 24 SKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETV--DAGHIMLDNQDItHVPAENRYVNTVFQSYALF 101
Cdd:cd03213 16 SPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGlgVSGEVLINGRPL-DKRSFRKIIGYVPQDDILH 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 102 PHMTVFENVAFglrmqktpAAEiaprvtdaLRmvqleefaqrkphQLSGGQQQRVAIARAVVNKPRLLLLDESLSALDYK 181
Cdd:cd03213 95 PTLTVRETLMF--------AAK--------LR-------------GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSS 145
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 16764581 182 LRKQMQNELKALqRKLGITFVFVTHD-QEEALTMSDRIVVMRNG 224
Cdd:cd03213 146 SALQVMSLLRRL-ADTGRTIICSIHQpSSEIFELFDKLLLLSQG 188
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
26-243 |
7.45e-24 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 103.00 E-value: 7.45e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 26 SFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDaGHIMLDNQDITHVPAEN--RYVNTVFQSYALFpH 103
Cdd:PRK11174 359 SPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQ-GSLKINGIELRELDPESwrKHLSWVGQNPQLP-H 436
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 104 MTVFENVAFGlrmqkTPAAEIApRVTDALRMVQLEEFAQRKPH-----------QLSGGQQQRVAIARAVVNKPRLLLLD 172
Cdd:PRK11174 437 GTLRDNVLLG-----NPDASDE-QLQQALENAWVSEFLPLLPQgldtpigdqaaGLSVGQAQRLALARALLQPCQLLLLD 510
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 16764581 173 ESLSALDYKLRKQMQNELKALQRklGITFVFVTHdQEEALTMSDRIVVMRNGVIEQDGTPREIYEEPkNLF 243
Cdd:PRK11174 511 EPTASLDAHSEQLVMQALNAASR--RQTTLMVTH-QLEDLAQWDQIWVMQDGQIVQQGDYAELSQAG-GLF 577
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
14-247 |
8.92e-24 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 98.65 E-value: 8.92e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 14 LSPLVLLSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQ-DITHVPaenryvn 92
Cdd:PRK09544 1 MTSLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKlRIGYVP------- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 93 tvfQSYALFPHMTVfeNVAFGLRMQK-TPAAEIAPrvtdALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLL 171
Cdd:PRK09544 74 ---QKLYLDTTLPL--TVNRFLRLRPgTKKEDILP----ALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVL 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 16764581 172 DESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMrNGVIEQDGTPREIYEEPKnlFVAGF 247
Cdd:PRK09544 145 DEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCL-NHHICCSGTPEVVSLHPE--FISMF 217
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
20-224 |
2.16e-23 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 94.44 E-value: 2.16e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 20 LSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHImldnqdithvpaenryvntvfqsya 99
Cdd:cd03221 3 LENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV------------------------- 57
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 100 lfphmtvfenvafglrmqktpaaeiapRVTDALRMVQLEefaqrkphQLSGGQQQRVAIARAVVNKPRLLLLDESLSALD 179
Cdd:cd03221 58 ---------------------------TWGSTVKIGYFE--------QLSGGEKMRLALAKLLLENPNLLLLDEPTNHLD 102
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 16764581 180 YKLRKQMQNELKALQRklgiTFVFVTHDQEEALTMSDRIVVMRNG 224
Cdd:cd03221 103 LESIEALEEALKEYPG----TVILVSHDRYFLDQVATKIIELEDG 143
|
|
| bacteriocin_ABC |
TIGR01193 |
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The ... |
29-235 |
2.21e-23 |
|
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]
Pssm-ID: 130261 [Multi-domain] Cd Length: 708 Bit Score: 101.74 E-value: 2.21e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 29 GKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVP--AENRYVNTVFQSYALFPHmTV 106
Cdd:TIGR01193 486 GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDrhTLRQFINYLPQEPYIFSG-SI 564
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 107 FENVAFGLRMQKT-----PAAEIAPRVTDALRMVQ-LEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALDY 180
Cdd:TIGR01193 565 LENLLLGAKENVSqdeiwAACEIAEIKDDIENMPLgYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDT 644
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 16764581 181 KLRKQMQNELKALQRKlgiTFVFVTHDQEEAlTMSDRIVVMRNGVIEQDGTPREI 235
Cdd:TIGR01193 645 ITEKKIVNNLLNLQDK---TIIFVAHRLSVA-KQSDKIIVLDHGKIIEQGSHDEL 695
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
30-226 |
2.71e-23 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 96.57 E-value: 2.71e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 30 KEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDA---GHIMLDNQDIThvPAENRY-VNTVFQSYALFPHMT 105
Cdd:cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGttsGQILFNGQPRK--PDQFQKcVAYVRQDDILLPGLT 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 106 VFENVAFG--LRMQ-KTPAAEIAPRVTD-ALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALDYK 181
Cdd:cd03234 98 VRETLTYTaiLRLPrKSSDAIRKKRVEDvLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSF 177
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 16764581 182 LRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNGVI 226
Cdd:cd03234 178 TALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEI 222
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
32-226 |
3.03e-23 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 96.77 E-value: 3.03e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 32 VISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVpaENRY----VNTVFQSYALFPHmTVF 107
Cdd:cd03248 29 VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQY--EHKYlhskVSLVGQEPVLFAR-SLQ 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 108 ENVAFGLR---MQKTPAAEIAPRVTDALRMVQLE--EFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALDYKL 182
Cdd:cd03248 106 DNIAYGLQscsFECVKEAAQKAHAHSFISELASGydTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAES 185
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 16764581 183 RKQMQnelKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNGVI 226
Cdd:cd03248 186 EQQVQ---QALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
33-256 |
3.53e-23 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 101.09 E-value: 3.53e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 33 ISQLDLTINNGEFLTLLGPSGCGKT-TVLRLIAGLE----TVDAGHIMLD--NQDI----THVPAENRYVN-----TVFQ 96
Cdd:PRK10261 32 VRNLSFSLQRGETLAIVGESGSGKSvTALALMRLLEqaggLVQCDKMLLRrrSRQVielsEQSAAQMRHVRgadmaMIFQ 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 97 S--YALFPHMTVFENVAFGLRMQ----KTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLL 170
Cdd:PRK10261 112 EpmTSLNPVFTVGEQIAESIRLHqgasREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLI 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 171 LDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYEEPKNLFVAGFIGE 250
Cdd:PRK10261 192 ADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQIFHAPQHPYTRALLAA 271
|
....*.
gi 16764581 251 INRFDA 256
Cdd:PRK10261 272 VPQLGA 277
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
20-207 |
3.79e-23 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 100.52 E-value: 3.79e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 20 LSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQ-DITHVPaenryvntvfQSY 98
Cdd:COG0488 1 LENLSKSFGGRPLLDDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPDSGEVSIPKGlRIGYLP----------QEP 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 99 ALFPHMTVFENVAFGLR-----MQKTPAAEIAPRVTDAL--RMVQL-EEFA-------------------------QRKP 145
Cdd:COG0488 71 PLDDDLTVLDTVLDGDAelralEAELEELEAKLAEPDEDleRLAELqEEFEalggweaearaeeilsglgfpeedlDRPV 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 16764581 146 HQLSGGQQQRVAIARAVVNKPRLLLLDESLSALDYKLRKQMQNELKALQrklgITFVFVTHD 207
Cdd:COG0488 151 SELSGGWRRRVALARALLSEPDLLLLDEPTNHLDLESIEWLEEFLKNYP----GTVLVVSHD 208
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
11-179 |
3.82e-23 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 96.07 E-value: 3.82e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 11 PRSLSPLVLLSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVpAENRY 90
Cdd:PRK13543 5 LHTAPPLLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG-DRSRF 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 91 VNTVFQSYALFPHMTVFENVAF-----GLRMQKTPAaeiaprvtDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNK 165
Cdd:PRK13543 84 MAYLGHLPGLKADLSTLENLHFlcglhGRRAKQMPG--------SALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSP 155
|
170
....*....|....
gi 16764581 166 PRLLLLDESLSALD 179
Cdd:PRK13543 156 APLWLLDEPYANLD 169
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
28-206 |
3.92e-23 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 94.53 E-value: 3.92e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 28 DGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHI-MLDNQDITHVPAEnryvntvfqsyalfPHMtv 106
Cdd:cd03223 12 DGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIgMPEGEDLLFLPQR--------------PYL-- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 107 fenvafglrmqktpaaeiaPRVTdaLRMvQLeefaqRKP--HQLSGGQQQRVAIARAVVNKPRLLLLDESLSALDyklrK 184
Cdd:cd03223 76 -------------------PLGT--LRE-QL-----IYPwdDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALD----E 124
|
170 180
....*....|....*....|..
gi 16764581 185 QMQNELKALQRKLGITFVFVTH 206
Cdd:cd03223 125 ESEDRLYQLLKELGITVISVGH 146
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
24-224 |
4.26e-23 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 95.61 E-value: 4.26e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 24 SKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHImldnqditHVPAENRYVNtvfQSYALFPh 103
Cdd:cd03250 12 SGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSV--------SVPGSIAYVS---QEPWIQN- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 104 MTVFENVAFGLRMQKtpaaeiaPRVTDALRMVQLEEFAQRKPHQ-----------LSGGQQQRVAIARAVVNKPRLLLLD 172
Cdd:cd03250 80 GTIRENILFGKPFDE-------ERYEKVIKACALEPDLEILPDGdlteigekginLSGGQKQRISLARAVYSDADIYLLD 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 16764581 173 ESLSALDYKLRKQ-MQNELKALqRKLGITFVFVTHdQEEALTMSDRIVVMRNG 224
Cdd:cd03250 153 DPLSAVDAHVGRHiFENCILGL-LLNNKTRILVTH-QLQLLPHADQIVVLDNG 203
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
39-240 |
4.48e-23 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 98.28 E-value: 4.48e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 39 TINNGEFLTLLGPSGCGKTTVLRLIAGL----ETVDAGHIMLDNQDITHVPAENRY------VNTVFQS--YALFPHMTV 106
Cdd:PRK11022 29 SVKQGEVVGIVGESGSGKSVSSLAIMGLidypGRVMAEKLEFNGQDLQRISEKERRnlvgaeVAMIFQDpmTSLNPCYTV 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 107 FENVAFGLRM-QKTPAAEIAPRVTDALRMVQLEEFAQR---KPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALDYKL 182
Cdd:PRK11022 109 GFQIMEAIKVhQGGNKKTRRQRAIDLLNQVGIPDPASRldvYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTI 188
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 16764581 183 RKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYEEPK 240
Cdd:PRK11022 189 QAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIFRAPR 246
|
|
| BtuD |
COG4138 |
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ... |
36-242 |
2.93e-22 |
|
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];
Pssm-ID: 443313 [Multi-domain] Cd Length: 248 Bit Score: 94.52 E-value: 2.93e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 36 LDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETvDAGHIMLDNQDITHVP----AENR-YVNTvfQSYALFPhMTVFENV 110
Cdd:COG4138 15 ISAQVNAGELIHLIGPNGAGKSTLLARMAGLLP-GQGEILLNGRPLSDWSaaelARHRaYLSQ--QQSPPFA-MPVFQYL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 111 AFGLRmQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAV------VN-KPRLLLLDESLSALDYklr 183
Cdd:COG4138 91 ALHQP-AGASSEAVEQLLAQLAEALGLEDKLSRPLTQLSGGEWQRVRLAAVLlqvwptINpEGQLLLLDEPMNSLDV--- 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 16764581 184 kQMQNELKALQRKL---GITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYeEPKNL 242
Cdd:COG4138 167 -AQQAALDRLLRELcqqGITVVMSSHDLNHTLRHADRVWLLKQGKLVASGETAEVM-TPENL 226
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
14-247 |
1.29e-21 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 97.01 E-value: 1.29e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 14 LSPLVLLSGISKSFD--GKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDI-THVPAENRY 90
Cdd:TIGR01257 925 LVPGVCVKNLVKIFEpsGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIeTNLDAVRQS 1004
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 91 VNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLL 170
Cdd:TIGR01257 1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVV 1084
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 16764581 171 LDESLSALDYKLRKQMQNELkaLQRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIyeepKNLFVAGF 247
Cdd:TIGR01257 1085 LDEPTSGVDPYSRRSIWDLL--LKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFL----KNCFGTGF 1155
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
33-274 |
1.50e-21 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 92.92 E-value: 1.50e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 33 ISQLDLTINNGEFLTLLGPSGCGKTTVLR-------LIAGLETvdAGHIMLDNQDI--THV-PAE-NRYVNTVFQSYALF 101
Cdd:PRK14243 26 VKNVWLDIPKNQITAFIGPSGCGKSTILRcfnrlndLIPGFRV--EGKVTFHGKNLyaPDVdPVEvRRRIGMVFQKPNPF 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 102 PHmTVFENVAFGLRMQ--KTPAAEIAPRvtdALRMVQLEEFAQRKPHQ----LSGGQQQRVAIARAVVNKPRLLLLDESL 175
Cdd:PRK14243 104 PK-SIYDNIAYGARINgyKGDMDELVER---SLRQAALWDEVKDKLKQsglsLSGGQQQRLCIARAIAVQPEVILMDEPC 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 176 SALDYKLRKQMQNELKALQRKLgiTFVFVTHDQEEALTMSDrIVVMRNGVIEQDGtpreiyeepknlfvaGFIGEINRFD 255
Cdd:PRK14243 180 SALDPISTLRIEELMHELKEQY--TIIIVTHNMQQAARVSD-MTAFFNVELTEGG---------------GRYGYLVEFD 241
|
250 260
....*....|....*....|.
gi 16764581 256 AT--VIERLDEQRVRASVEGR 274
Cdd:PRK14243 242 RTekIFNSPQQQATRDYVSGR 262
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
4-239 |
6.10e-21 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 92.22 E-value: 6.10e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 4 SKKLNNQPRSLSPLVLL--SGISKSFDGKE-----VISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAG---- 72
Cdd:PRK13631 6 MKKKLKVPNPLSDDIILrvKNLYCVFDEKQenelvALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGtiqv 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 73 -------HIMLDNQDITHVPAE-------NRYVNTVFQ--SYALFPHmTVFENVAFGLRMQKTPAAEIAPRVTDALRMVQ 136
Cdd:PRK13631 86 gdiyigdKKNNHELITNPYSKKiknfkelRRRVSMVFQfpEYQLFKD-TIEKDIMFGPVALGVKKSEAKKLAKFYLNKMG 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 137 LEE-FAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALDYKLRKQMQnELKALQRKLGITFVFVTHDQEEALTMS 215
Cdd:PRK13631 165 LDDsYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMM-QLILDAKANNKTVFVITHTMEHVLEVA 243
|
250 260
....*....|....*....|....
gi 16764581 216 DRIVVMRNGVIEQDGTPREIYEEP 239
Cdd:PRK13631 244 DEVIVMDKGKILKTGTPYEIFTDQ 267
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
29-226 |
9.41e-21 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 93.54 E-value: 9.41e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 29 GKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITH-------------VPaENRyvntvf 95
Cdd:COG1129 264 VGGVVRDVSFSVRAGEILGIAGLVGAGRTELARALFGADPADSGEIRLDGKPVRIrsprdairagiayVP-EDR------ 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 96 QSYALFPHMTVFENVAF--------GLRMQKTPAAEIAPRVTDALRMvqleefaqrKPH-------QLSGGQQQRVAIAR 160
Cdd:COG1129 337 KGEGLVLDLSIRENITLasldrlsrGGLLDRRRERALAEEYIKRLRI---------KTPspeqpvgNLSGGNQQKVVLAK 407
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 16764581 161 AVVNKPRLLLLDESLSALD-------YKLrkqMqNELKAlqRKLGItfVFVTHDQEEALTMSDRIVVMRNGVI 226
Cdd:COG1129 408 WLATDPKVLILDEPTRGIDvgakaeiYRL---I-RELAA--EGKAV--IVISSELPELLGLSDRILVMREGRI 472
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
15-224 |
1.36e-20 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 93.07 E-value: 1.36e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 15 SPLVLLSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLE---TVDaGHIMLDNQDIT--HV-PAEN 88
Cdd:PRK13549 3 EYLLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYphgTYE-GEIIFEGEELQasNIrDTER 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 89 RYVNTVFQSYALFPHMTVFENVAFGlrmqktpaAEIAP-----------RVTDALRMVQLEEFAQRKPHQLSGGQQQRVA 157
Cdd:PRK13549 82 AGIAIIHQELALVKELSVLENIFLG--------NEITPggimdydamylRAQKLLAQLKLDINPATPVGNLGLGQQQLVE 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 16764581 158 IARAVVNKPRLLLLDESLSALDYKLRKQMQNELKALQRKlGITFVFVTHDQEEALTMSDRIVVMRNG 224
Cdd:PRK13549 154 IAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAH-GIACIYISHKLNEVKAISDTICVIRDG 219
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
30-230 |
1.52e-20 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 89.31 E-value: 1.52e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 30 KEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHI-MLDNqdithVPAENR-----YVNTVF-QSYALFP 102
Cdd:cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVrVAGL-----VPWKRRkkflrRIGVVFgQKTQLWW 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 103 HMTVFENVAFGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALDYKL 182
Cdd:cd03267 109 DLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVA 188
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 16764581 183 RKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDG 230
Cdd:cd03267 189 QENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
20-230 |
2.76e-20 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 86.98 E-value: 2.76e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 20 LSGISKSFDGKE--VISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAENR-YVNTVFQ 96
Cdd:cd03247 3 INNVSFSYPEQEqqVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSsLISVLNQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 97 SYALFpHMTVFENVafGLRmqktpaaeiaprvtdalrmvqleefaqrkphqLSGGQQQRVAIARAVVNKPRLLLLDESLS 176
Cdd:cd03247 83 RPYLF-DTTLRNNL--GRR--------------------------------FSGGERQRLALARILLQDAPIVLLDEPTV 127
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 16764581 177 ALDYKLRKQMQNEL-KALQRKlgiTFVFVTHdQEEALTMSDRIVVMRNGVIEQDG 230
Cdd:cd03247 128 GLDPITERQLLSLIfEVLKDK---TLIWITH-HLTGIEHMDKILFLENGKIIMQG 178
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
28-238 |
3.44e-20 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 87.58 E-value: 3.44e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 28 DGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLE--TVDAGHIMLDNQDITHVPAENRYVNTVFqsyalfphmt 105
Cdd:cd03217 11 GGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPkyEVTEGEILFKGEDITDLPPEERARLGIF---------- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 106 vfenvafgLRMQKTPaaEIaPRVT--DALRMVQlEEFaqrkphqlSGGQQQRVAIARAVVNKPRLLLLDESLSALDYKLR 183
Cdd:cd03217 81 --------LAFQYPP--EI-PGVKnaDFLRYVN-EGF--------SGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDAL 140
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 16764581 184 KQMQNELKALqRKLGITFVFVTHDQEEALTM-SDRIVVMRNGVIEQDGtPREIYEE 238
Cdd:cd03217 141 RLVAEVINKL-REEGKSVLIITHYQRLLDYIkPDRVHVLYDGRIVKSG-DKELALE 194
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
11-226 |
3.92e-20 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 91.63 E-value: 3.92e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 11 PRSLSPLVL-LSGIS-KSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDIT------ 82
Cdd:COG3845 250 PAEPGEVVLeVENLSvRDDRGVPALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSIRLDGEDITglspre 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 83 -------HVPaENRyvntvfQSYALFPHMTVFENVAFGLRMQKtpaaEIAPRVTdaLRMVQLEEFAQRK----------P 145
Cdd:COG3845 330 rrrlgvaYIP-EDR------LGRGLVPDMSVAENLILGRYRRP----PFSRGGF--LDRKAIRAFAEELieefdvrtpgP 396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 146 HQ----LSGGQQQRVAIARAVVNKPRLLL-------LDESLSAldyklrkQMQNELKALqRKLGITFVFVTHDQEEALTM 214
Cdd:COG3845 397 DTparsLSGGNQQKVILARELSRDPKLLIaaqptrgLDVGAIE-------FIHQRLLEL-RDAGAAVLLISEDLDEILAL 468
|
250
....*....|..
gi 16764581 215 SDRIVVMRNGVI 226
Cdd:COG3845 469 SDRIAVMYEGRI 480
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
30-239 |
7.68e-20 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 90.93 E-value: 7.68e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 30 KEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAEN--RYVNTVFQSYALFPHmTVF 107
Cdd:PRK10789 328 HPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSwrSRLAVVSQTPFLFSD-TVA 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 108 ENVAFGlRMQKTP-----AAEIAPRVTDALRMVQ--LEEFAQRKPhQLSGGQQQRVAIARAVVNKPRLLLLDESLSALDY 180
Cdd:PRK10789 407 NNIALG-RPDATQqeiehVARLASVHDDILRLPQgyDTEVGERGV-MLSGGQKQRISIARALLLNAEILILDDALSAVDG 484
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 16764581 181 KLRKQMQNELKalQRKLGITFVFVTHdQEEALTMSDRIVVMRNGVIEQDGTPREIYEEP 239
Cdd:PRK10789 485 RTEHQILHNLR--QWGEGRTVIISAH-RLSALTEASEILVMQHGHIAQRGNHDQLAQQS 540
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
23-238 |
1.13e-19 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 90.46 E-value: 1.13e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 23 ISKSFDGKEV--ISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAEN--RYVNTVFQSY 98
Cdd:PRK11176 347 VTFTYPGKEVpaLRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASlrNQVALVSQNV 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 99 ALFpHMTVFENVAFGlRMQKTPAAEIAprvtDALRMVQLEEFAQRKPH-----------QLSGGQQQRVAIARAVVNKPR 167
Cdd:PRK11176 427 HLF-NDTIANNIAYA-RTEQYSREQIE----EAARMAYAMDFINKMDNgldtvigengvLLSGGQRQRIAIARALLRDSP 500
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 16764581 168 LLLLDESLSALDYKLRKQMQNELKALQRKLgiTFVFVTHdQEEALTMSDRIVVMRNGVIEQDGTPREIYEE 238
Cdd:PRK11176 501 ILILDEATSALDTESERAIQAALDELQKNR--TSLVIAH-RLSTIEKADEILVVEDGEIVERGTHAELLAQ 568
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
36-234 |
1.51e-19 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 90.03 E-value: 1.51e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 36 LDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDIThvpAENRY-----VNTVFQSYALFPHMTVFENv 110
Cdd:PRK10522 342 INLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVT---AEQPEdyrklFSAVFTDFHLFDQLLGPEG- 417
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 111 afglrmqKTPAAEIAPRVTDALRM---VQLEEFAQRKPhQLSGGQQQRVAIARAVVNKPRLLLLDESLSALDYKLRKQMQ 187
Cdd:PRK10522 418 -------KPANPALVEKWLERLKMahkLELEDGRISNL-KLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFY 489
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 16764581 188 NELKALQRKLGITFVFVTHDqEEALTMSDRIVVMRNGVI-EQDGTPRE 234
Cdd:PRK10522 490 QVLLPLLQEMGKTIFAISHD-DHYFIHADRLLEMRNGQLsELTGEERD 536
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
28-232 |
3.26e-19 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 85.24 E-value: 3.26e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 28 DGKEVISQLDLTINNGEFLTLLGPSGCGKTTV----LRLIagleTVDAGHIMLDNQDITHVPaenryVNTVFQSYALFPH 103
Cdd:cd03244 15 NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLllalFRLV----ELSSGSILIDGVDISKIG-----LHDLRSRISIIPQ 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 104 mtvfENVAFG--LRM-----QKTPAAEIAprvtDALRMVQLEEFAQRKPHQL-----------SGGQQQRVAIARAVVNK 165
Cdd:cd03244 86 ----DPVLFSgtIRSnldpfGEYSDEELW----QALERVGLKEFVESLPGGLdtvveeggenlSVGQRQLLCLARALLRK 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 16764581 166 PRLLLLDESLSALDYKLRKQMQnelKALQRKL-GITFVFVTHdQEEALTMSDRIVVMRNGVIEQDGTP 232
Cdd:cd03244 158 SKILVLDEATASVDPETDALIQ---KTIREAFkDCTVLTIAH-RLDTIIDSDRILVLDKGRVVEFDSP 221
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
36-239 |
5.30e-19 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 85.37 E-value: 5.30e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 36 LDLTINNGEFLTLLGPSGCGKTTVLRLIAGLeTVDAGHIMLDNQDITHVPAEN--RYVNTVFQSYALFPHMTVFENVAFG 113
Cdd:PRK03695 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGL-LPGSGSIQFAGQPLEAWSAAElaRHRAYLSQQQTPPFAMPVFQYLTLH 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 114 LRmQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIArAVV------NKP--RLLLLDESLSALDYKLRKQ 185
Cdd:PRK03695 94 QP-DKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLA-AVVlqvwpdINPagQLLLLDEPMNSLDVAQQAA 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 16764581 186 MQNELKALQRkLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYEEP 239
Cdd:PRK03695 172 LDRLLSELCQ-QGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLTPE 224
|
|
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
26-232 |
6.73e-19 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 84.73 E-value: 6.73e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 26 SFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLE--TVDAGHIMLDNQDITHVPAENR------YVntvFQS 97
Cdd:COG0396 9 SVEGKEILKGVNLTIKPGEVHAIMGPNGSGKSTLAKVLMGHPkyEVTSGSILLDGEDILELSPDERaragifLA---FQY 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 98 YALFPHMTV--FENVAFGLRMQKT-PAAEIAPRVTDALRMVQL-EEFAQRKPHQ-LSGGQQQRVAIARAVVNKPRLLLLD 172
Cdd:COG0396 86 PVEIPGVSVsnFLRTALNARRGEElSAREFLKLLKEKMKELGLdEDFLDRYVNEgFSGGEKKRNEILQMLLLEPKLAILD 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 16764581 173 ESLSALDYKLRKQMQNELKALQRKlGITFVFVTHdQEEALTM--SDRIVVMRNGVIEQDGTP 232
Cdd:COG0396 166 ETDSGLDIDALRIVAEGVNKLRSP-DRGILIITH-YQRILDYikPDFVHVLVDGRIVKSGGK 225
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
16-224 |
4.83e-18 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 85.61 E-value: 4.83e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 16 PLVLLSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQD---ITHVPAENRYVN 92
Cdd:PRK09700 4 PYISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINynkLDHKLAAQLGIG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 93 TVFQSYALFPHMTVFENVAFGLRMQK-------TPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNK 165
Cdd:PRK09700 84 IIYQELSVIDELTVLENLYIGRHLTKkvcgvniIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLD 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 16764581 166 PRLLLLDESLSALDYKLRKQMQNELKALqRKLGITFVFVTHDQEEALTMSDRIVVMRNG 224
Cdd:PRK09700 164 AKVIIMDEPTSSLTNKEVDYLFLIMNQL-RKEGTAIVYISHKLAEIRRICDRYTVMKDG 221
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
37-238 |
6.10e-18 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 85.56 E-value: 6.10e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 37 DLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIML-----DNQDIthvpAENRYVNTVFQSYALFPHMTVFENVA 111
Cdd:NF033858 286 SFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAWLfgqpvDAGDI----ATRRRVGYMSQAFSLYGELTVRQNLE 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 112 FGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALDYKLRKQMQNELK 191
Cdd:NF033858 362 LHARLFHLPAAEIAARVAEMLERFDLADVADALPDSLPLGIRQRLSLAVAVIHKPELLILDEPTSGVDPVARDMFWRLLI 441
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 16764581 192 ALQRKLGITfVFV-THDQEEALTmSDRIVVMRNG-VIEQDgTPREIYEE 238
Cdd:NF033858 442 ELSREDGVT-IFIsTHFMNEAER-CDRISLMHAGrVLASD-TPAALVAA 487
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
28-235 |
6.90e-18 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 82.57 E-value: 6.90e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 28 DGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDA--------GHIMLDNQDITHVPAEN----RYVnTVF 95
Cdd:PRK13547 12 RHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGaprgarvtGDVTLNGEPLAAIDAPRlarlRAV-LPQ 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 96 QSYALFPhMTVFENVAFGLRMQKTPAAEIAPRVTD----ALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVN------- 164
Cdd:PRK13547 91 AAQPAFA-FSAREIVLLGRYPHARRAGALTHRDGEiawqALALAGATALVGRDVTTLSGGELARVQFARVLAQlwpphda 169
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 16764581 165 --KPRLLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREI 235
Cdd:PRK13547 170 aqPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADV 242
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
22-209 |
7.31e-18 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 81.54 E-value: 7.31e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 22 GISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLE--TVDAGHIMLDNQDIThvpaenryvntvfqsya 99
Cdd:COG2401 35 GVELRVVERYVLRDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGALkgTPVAGCVDVPDNQFG----------------- 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 100 lfPHMTVFENVAfglRMQKTPAAeiaprvTDALRMVQLEE--FAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSA 177
Cdd:COG2401 98 --REASLIDAIG---RKGDFKDA------VELLNAVGLSDavLWLRRFKELSTGQKFRFRLALLLAERPKLLVIDEFCSH 166
|
170 180 190
....*....|....*....|....*....|..
gi 16764581 178 LDYKLRKQMQNELKALQRKLGITFVFVTHDQE 209
Cdd:COG2401 167 LDRQTAKRVARNLQKLARRAGITLVVATHHYD 198
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
15-224 |
1.09e-17 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 84.19 E-value: 1.09e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 15 SPLVLLSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQdithvpaENRYVNT- 93
Cdd:PRK11288 2 SPYLSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQ-------EMRFASTt 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 94 ---------VFQSYALFPHMTVFENV-------AFGLRMQKTPAAeiapRVTDALRMVQLEEFAQRKPHQLSGGQQQRVA 157
Cdd:PRK11288 75 aalaagvaiIYQELHLVPEMTVAENLylgqlphKGGIVNRRLLNY----EAREQLEHLGVDIDPDTPLKYLSIGQRQMVE 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 158 IARAVVNKPRLLLLDE---SLSALDYKLRKQMQNELKALQRKLgitfVFVTHDQEEALTMSDRIVVMRNG 224
Cdd:PRK11288 151 IAKALARNARVIAFDEptsSLSAREIEQLFRVIRELRAEGRVI----LYVSHRMEEIFALCDAITVFKDG 216
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
33-226 |
2.97e-17 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 83.13 E-value: 2.97e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 33 ISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDI-THVPAENRYVNTVFQSY-----ALFPHMTV 106
Cdd:PRK10762 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVvTRSPQDGLANGIVYISEdrkrdGLVLGMSV 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 107 FENVA------FGLRMQKTPAAEIAPRVTDALRMvqleeFAQRKPHQ------LSGGQQQRVAIARAVVNKPRLLLLDES 174
Cdd:PRK10762 348 KENMSltalryFSRAGGSLKHADEQQAVSDFIRL-----FNIKTPSMeqaiglLSGGNQQKVAIARGLMTRPKVLILDEP 422
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 16764581 175 LSALDYKLRK---QMQNELKAlqrkLGITFVFVTHDQEEALTMSDRIVVMRNGVI 226
Cdd:PRK10762 423 TRGVDVGAKKeiyQLINQFKA----EGLSIILVSSEMPEVLGMSDRILVMHEGRI 473
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
33-224 |
3.75e-17 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 79.68 E-value: 3.75e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 33 ISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAG-LETVDA----GHIMLDNQDITHVPAENRYVNTVFQSYALFPHMTVF 107
Cdd:cd03290 17 LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGeMQTLEGkvhwSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNATVE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 108 ENVAFGLRMQK------TPAAEIAPRVtDALRMVQLEEFAQRKPHqLSGGQQQRVAIARAVVNKPRLLLLDESLSALDYK 181
Cdd:cd03290 97 ENITFGSPFNKqrykavTDACSLQPDI-DLLPFGDQTEIGERGIN-LSGGQRQRICVARALYQNTNIVFLDDPFSALDIH 174
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 16764581 182 LRKQMQNE--LKALQRKlGITFVFVTHdQEEALTMSDRIVVMRNG 224
Cdd:cd03290 175 LSDHLMQEgiLKFLQDD-KRTLVLVTH-KLQYLPHADWIIAMKDG 217
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
14-224 |
3.76e-17 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 79.23 E-value: 3.76e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 14 LSPLVLLSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGL----ETVDaGHIMLDNQDI----THVP 85
Cdd:cd03233 4 LSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRtegnVSVE-GDIHYNGIPYkefaEKYP 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 86 AENRYVNtvfQSYALFPHMTVFENVAFGLRMQktpaaeiaprvtdALRMVqleefaqRKphqLSGGQQQRVAIARAVVNK 165
Cdd:cd03233 83 GEIIYVS---EEDVHFPTLTVRETLDFALRCK-------------GNEFV-------RG---ISGGERKRVSIAEALVSR 136
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 166 PRLLLLDESLSALDYKLRKQMQNELKALQRKLGIT-FVFVTHDQEEALTMSDRIVVMRNG 224
Cdd:cd03233 137 ASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTtFVSLYQASDEIYDLFDKVLVLYEG 196
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
28-238 |
3.87e-17 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 82.84 E-value: 3.87e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 28 DGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVP--AENRYVNTVFQSYALFPHmT 105
Cdd:PRK10790 352 DDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLShsVLRQGVAMVQQDPVVLAD-T 430
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 106 VFENVAFGLRMQKTpaaeiapRVTDALRMVQLEEFAQRKP-----------HQLSGGQQQRVAIARAVVNKPRLLLLDES 174
Cdd:PRK10790 431 FLANVTLGRDISEE-------QVWQALETVQLAELARSLPdglytplgeqgNNLSVGQKQLLALARVLVQTPQILILDEA 503
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 16764581 175 LSALDYKLRKQMQNELKALQRKlgITFVFVTHdQEEALTMSDRIVVMRNGVIEQDGTPREIYEE 238
Cdd:PRK10790 504 TANIDSGTEQAIQQALAAVREH--TTLVVIAH-RLSTIVEADTILVLHRGQAVEQGTHQQLLAA 564
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
30-275 |
4.13e-17 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 81.29 E-value: 4.13e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 30 KEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNqditHVPAENRYVN-----TVF-QSYALFPH 103
Cdd:COG4586 35 VEAVDDISFTIEPGEIVGFIGPNGAGKSTTIKMLTGILVPTSGEVRVLG----YVPFKRRKEFarrigVVFgQRSQLWWD 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 104 MTVFENvaFGL--RMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALDYK 181
Cdd:COG4586 111 LPAIDS--FRLlkAIYRIPDAEYKKRLDELVELLDLGELLDTPVRQLSLGQRMRCELAAALLHRPKILFLDEPTIGLDVV 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 182 LRKQMQNELKALQRKLGITFVFVTHDQE--EALtmSDRIVVMRNGVIEQDGTPREIYE--EPKNLFVAGFIGEINRFD-- 255
Cdd:COG4586 189 SKEAIREFLKEYNRERGTTILLTSHDMDdiEAL--CDRVIVIDHGRIIYDGSLEELKErfGPYKTIVLELAEPVPPLElp 266
|
250 260
....*....|....*....|..
gi 16764581 256 --ATVIERlDEQRVRASVEGRE 275
Cdd:COG4586 267 rgGEVIER-EGNRVRLEVDPRE 287
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
30-240 |
4.22e-17 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 80.13 E-value: 4.22e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 30 KEVISQLDLTINNGEFLTLLGPSGCGKT-TVLRLI----AGLETVdAGHIMLDNQDITHVPAENRYVNTVFQS--YALFP 102
Cdd:PRK10418 16 QPLVHGVSLTLQRGRVLALVGGSGSGKSlTCAAALgilpAGVRQT-AGRVLLDGKPVAPCALRGRKIATIMQNprSAFNP 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 103 HMTVFENVAFGLRMQKTPAAEiaPRVTDALRMVQLEE---FAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALD 179
Cdd:PRK10418 95 LHTMHTHARETCLALGKPADD--ATLTAALEAVGLENaarVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLD 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 16764581 180 YKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYEEPK 240
Cdd:PRK10418 173 VVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNAPK 233
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
39-220 |
6.25e-17 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 79.37 E-value: 6.25e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 39 TINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPaenRYVNTVFQsyalfphMTVFEnvafgLRMQK 118
Cdd:cd03237 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKP---QYIKADYE-------GTVRD-----LLSSI 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 119 TPAAEIAPRV-TDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALDYKLRKQMQNELKALQRKL 197
Cdd:cd03237 86 TKDFYTHPYFkTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENN 165
|
170 180
....*....|....*....|...
gi 16764581 198 GITFVFVTHDQEEALTMSDRIVV 220
Cdd:cd03237 166 EKTAFVVEHDIIMIDYLADRLIV 188
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
19-216 |
1.56e-16 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 77.30 E-value: 1.56e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 19 LLSGISKSFDGKE--VISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITH-VPAENRYVNTVF 95
Cdd:PRK13540 1 MLDVIELDFDYHDqpLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKdLCTYQKQLCFVG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 96 QSYALFPHMTVFENVAFGLRMQKTpaaeiAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESL 175
Cdd:PRK13540 81 HRSGINPYLTLRENCLYDIHFSPG-----AVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPL 155
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 16764581 176 SALDYKLRKQMQNELKALQRKLGItfVFVTHDQEEALTMSD 216
Cdd:PRK13540 156 VALDELSLLTIITKIQEHRAKGGA--VLLTSHQDLPLNKAD 194
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
70-235 |
1.59e-16 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 81.61 E-value: 1.59e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 70 DAGHIMLDNQDITHVPAEN--RYVNTVFQSYALFpHMTVFENVAFGlrmqktpaAEIAPR--VTDALRMVQLEEFAQRKP 145
Cdd:PTZ00265 1275 NSGKILLDGVDICDYNLKDlrNLFSIVSQEPMLF-NMSIYENIKFG--------KEDATRedVKRACKFAAIDEFIESLP 1345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 146 HQ-----------LSGGQQQRVAIARAVVNKPRLLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHdQEEALTM 214
Cdd:PTZ00265 1346 NKydtnvgpygksLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAH-RIASIKR 1424
|
170 180
....*....|....*....|....*.
gi 16764581 215 SDRIVVM----RNG-VIEQDGTPREI 235
Cdd:PTZ00265 1425 SDKIVVFnnpdRTGsFVQAHGTHEEL 1450
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
20-248 |
2.25e-16 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 81.21 E-value: 2.25e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 20 LSGISKSFDGKE--VISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDI-THVPAENRYVNTVFQ 96
Cdd:TIGR01257 1940 LNELTKVYSGTSspAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSIlTNISDVHQNMGYCPQ 2019
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 97 SYALFPHMTVFENVAFGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLS 176
Cdd:TIGR01257 2020 FDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTT 2099
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 16764581 177 ALDYKLRKQMQNELKALQRKlGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIyeepKNLFVAGFI 248
Cdd:TIGR01257 2100 GMDPQARRMLWNTIVSIIRE-GRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHL----KSKFGDGYI 2166
|
|
| SapD |
COG4170 |
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms]; |
38-239 |
4.24e-16 |
|
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
Pssm-ID: 443330 [Multi-domain] Cd Length: 331 Bit Score: 78.41 E-value: 4.24e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 38 LTINNGEFLTLLGPSGCGKTTVLRLIAGLE----TVDAGHIMLDNQDITHVPAENRY------VNTVFQ--SYALFPHMT 105
Cdd:COG4170 28 LTLNEGEIRGLVGESGSGKSLIAKAICGITkdnwHVTADRFRWNGIDLLKLSPRERRkiigreIAMIFQepSSCLDPSAK 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 106 VFENVAFGL-----------RMQ--KTPAAEIAPRVtdALRMVQ--LEEFaqrkPHQLSGGQQQRVAIARAVVNKPRLLL 170
Cdd:COG4170 108 IGDQLIEAIpswtfkgkwwqRFKwrKKRAIELLHRV--GIKDHKdiMNSY----PHELTEGECQKVMIAMAIANQPRLLI 181
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16764581 171 LDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYEEP 239
Cdd:COG4170 182 ADEPTNAMESTTQAQIFRLLARLNQLQGTSILLISHDLESISQWADTITVLYCGQTVESGPTEQILKSP 250
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
3-238 |
1.02e-15 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 78.39 E-value: 1.02e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 3 QSKKLNNQPrslsplVLLSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLdnqdit 82
Cdd:PRK15064 311 QDKKLHRNA------LEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKW------ 378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 83 hvpAENRYVNTVFQ-SYALFPH-MTVFENVAfglrmQKTPAAEIAPRVTDAL-RMVQLEEFAQRKPHQLSGGQQQRVAIA 159
Cdd:PRK15064 379 ---SENANIGYYAQdHAYDFENdLTLFDWMS-----QWRQEGDDEQAVRGTLgRLLFSQDDIKKSVKVLSGGEKGRMLFG 450
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 160 RAVVNKPRLLLLDESLSALDYKLRKQMQNELKALQrklGiTFVFVTHDQEEALTMSDRIVVMR-NGVIEQDGTpreiYEE 238
Cdd:PRK15064 451 KLMMQKPNVLVMDEPTNHMDMESIESLNMALEKYE---G-TLIFVSHDREFVSSLATRIIEITpDGVVDFSGT----YEE 522
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
15-281 |
3.77e-15 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 76.58 E-value: 3.77e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 15 SPLVLLSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDIT-HVPAENRY--V 91
Cdd:PRK10762 2 QALLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTfNGPKSSQEagI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 92 NTVFQSYALFPHMTVFENVAFGlRMQKTPAAEIAPRVTDA-----LRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKP 166
Cdd:PRK10762 82 GIIHQELNLIPQLTIAENIFLG-REFVNRFGRIDWKKMYAeadklLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFES 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 167 RLLLLDESLSAL-DYKLRK--QMQNELKALQRklGItfVFVTHDQEEALTMSDRIVVMRNGvieqdgtpreiyeepknlf 243
Cdd:PRK10762 161 KVIIMDEPTDALtDTETESlfRVIRELKSQGR--GI--VYISHRLKEIFEICDDVTVFRDG------------------- 217
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 16764581 244 vaGFIGE--INRFDA-TVIE-----RLDEQRVRASVEGRECNIYVN 281
Cdd:PRK10762 218 --QFIAEreVADLTEdSLIEmmvgrKLEDQYPRLDKAPGEVRLKVD 261
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
31-226 |
6.76e-15 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 75.86 E-value: 6.76e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 31 EVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAENR------YVNTVFQSYALFPHM 104
Cdd:PRK15439 277 EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRlarglvYLPEDRQSSGLYLDA 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 105 TVFENVA------FGLRMQKTPAAEIAPRVTDAL--RMVQLEEFAQRkphqLSGGQQQRVAIARAVVNKPRLLLLDESLS 176
Cdd:PRK15439 357 PLAWNVCalthnrRGFWIKPARENAVLERYRRALniKFNHAEQAART----LSGGNQQKVLIAKCLEASPQLLIVDEPTR 432
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 16764581 177 ALDYKLRKQMQNELKALQrKLGITFVFVTHDQEEALTMSDRIVVMRNGVI 226
Cdd:PRK15439 433 GVDVSARNDIYQLIRSIA-AQNVAVLFISSDLEEIEQMADRVLVMHQGEI 481
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
21-224 |
1.07e-14 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 75.69 E-value: 1.07e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 21 SGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVD--AGHIMLDNQDITHvPAENRyVNTVFQSY 98
Cdd:PLN03211 72 SDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNnfTGTILANNRKPTK-QILKR-TGFVTQDD 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 99 ALFPHMTVFENVAFG--LRMQKTPAAEIAPRVTDALrmvqLEEFAQRKPHQ----------LSGGQQQRVAIARAVVNKP 166
Cdd:PLN03211 150 ILYPHLTVRETLVFCslLRLPKSLTKQEKILVAESV----ISELGLTKCENtiignsfirgISGGERKRVSIAHEMLINP 225
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 16764581 167 RLLLLDESLSALDYKLRKQMQNELKALQRKlGITFVFVTHD-QEEALTMSDRIVVMRNG 224
Cdd:PLN03211 226 SLLILDEPTSGLDATAAYRLVLTLGSLAQK-GKTIVTSMHQpSSRVYQMFDSVLVLSEG 283
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
40-316 |
1.20e-14 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 75.47 E-value: 1.20e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 40 INNGEFLTLLGPSGCGKTTVLRLIAGLETVD---AGHIMLDNQDIThVPAENRYVNTVFQSYALFPHMTVFENVAFG--L 114
Cdd:TIGR00955 48 AKPGELLAVMGSSGAGKTTLMNALAFRSPKGvkgSGSVLLNGMPID-AKEMRAISAYVQQDDLFIPTLTVREHLMFQahL 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 115 RMQK-TPAAEIAPRVTDALRMVQLEEFAQRK---PHQ---LSGGQQQRVAIARAVVNKPRLLLLDESLSALDYKLRKQMQ 187
Cdd:TIGR00955 127 RMPRrVTKKEKRERVDEVLQALGLRKCANTRigvPGRvkgLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVV 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 188 NELKALQRKlGITFVFVTHD-QEEALTMSDRIVVMRNGVIEQDGTPREI--------YEEPKNLFVAGFIGEINRfdatv 258
Cdd:TIGR00955 207 QVLKGLAQK-GKTIICTIHQpSSELFELFDKIILMAEGRVAYLGSPDQAvpffsdlgHPCPENYNPADFYVQVLA----- 280
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 16764581 259 IERLDEQRVRASVEGrecnIYVNFAVEP-GQKLNVLLRPEDLRVEEINDDNHIEGLIGY 316
Cdd:TIGR00955 281 VIPGSENESRERIEK----ICDSFAVSDiGRDMLVNTNLWSGKAGGLVKDSENMEGIGY 335
|
|
| PvdE |
COG4615 |
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion ... |
36-233 |
2.59e-14 |
|
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion transport and metabolism];
Pssm-ID: 443659 [Multi-domain] Cd Length: 547 Bit Score: 74.06 E-value: 2.59e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 36 LDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDIThvpAENR--YVN---TVFQSYALFPHMtvfenv 110
Cdd:COG4615 351 IDLTIRRGELVFIVGGNGSGKSTLAKLLTGLYRPESGEILLDGQPVT---ADNReaYRQlfsAVFSDFHLFDRL------ 421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 111 aFGLRMQKTPAaeiapRVTDALRMVQLEE--------FAQRKphqLSGGQQQRVAIARAVV-NKPrLLLLDEslSALD-- 179
Cdd:COG4615 422 -LGLDGEADPA-----RARELLERLELDHkvsvedgrFSTTD---LSQGQRKRLALLVALLeDRP-ILVFDE--WAADqd 489
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 16764581 180 -------YklrKQMQNELKAlqrkLGITFVFVTHDqEEALTMSDRIVVMRNGVIEQDGTPR 233
Cdd:COG4615 490 pefrrvfY---TELLPELKA----RGKTVIAISHD-DRYFDLADRVLKMDYGKLVELTGPA 542
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
10-226 |
4.24e-14 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 73.41 E-value: 4.24e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 10 QPRSLSPLVL-LSGISksfdGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDIT-HVPA- 86
Cdd:PRK11288 249 RPRPLGEVRLrLDGLK----GPGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDiRSPRd 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 87 ----------ENRyvntvfQSYALFPHMTVFENVAFGLRMQKTPA---------AEIAPRVTDALRMvqleefAQRKPHQ 147
Cdd:PRK11288 325 airagimlcpEDR------KAEGIIPVHSVADNINISARRHHLRAgclinnrweAENADRFIRSLNI------KTPSREQ 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 148 ----LSGGQQQRVAIARAVVNKPRLLLLDESLSALDYKLRKQMQNELKALQRKlGITFVFVTHDQEEALTMSDRIVVMRN 223
Cdd:PRK11288 393 limnLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQ-GVAVLFVSSDLPEVLGVADRIVVMRE 471
|
...
gi 16764581 224 GVI 226
Cdd:PRK11288 472 GRI 474
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
30-238 |
4.46e-14 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 74.00 E-value: 4.46e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 30 KEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAG-LETVDAGHIMLDNQdITHVPAenryVNTVFQSyalfphmTVFE 108
Cdd:PLN03130 630 RPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGeLPPRSDASVVIRGT-VAYVPQ----VSWIFNA-------TVRD 697
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 109 NVAFGLRMQKtPAAEIAPRVT------DALRMVQLEEFAQRKPHqLSGGQQQRVAIARAVVNKPRLLLLDESLSALDYKL 182
Cdd:PLN03130 698 NILFGSPFDP-ERYERAIDVTalqhdlDLLPGGDLTEIGERGVN-ISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHV 775
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 16764581 183 RKQMQNelKALQRKL-GITFVFVThDQEEALTMSDRIVVMRNGVIEQDGTpreiYEE 238
Cdd:PLN03130 776 GRQVFD--KCIKDELrGKTRVLVT-NQLHFLSQVDRIILVHEGMIKEEGT----YEE 825
|
|
| PRK13541 |
PRK13541 |
cytochrome c biogenesis protein CcmA; Provisional |
35-188 |
5.57e-14 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184128 [Multi-domain] Cd Length: 195 Bit Score: 69.90 E-value: 5.57e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 35 QLDLTINNGEF----LTLL--------GPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAEnrYVNTVFQSYALFP 102
Cdd:PRK13541 6 QLQFNIEQKNLfdlsITFLpsaityikGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKP--YCTYIGHNLGLKL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 103 HMTVFENVAFGLRMQKTpaaeiAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALDYKL 182
Cdd:PRK13541 84 EMTVFENLKFWSEIYNS-----AETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKEN 158
|
....*.
gi 16764581 183 RKQMQN 188
Cdd:PRK13541 159 RDLLNN 164
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
22-207 |
5.89e-14 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 73.05 E-value: 5.89e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 22 GISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHImldnqdithvpaenRYVNTVFQSY--- 98
Cdd:TIGR03719 327 NLTKAFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTI--------------EIGETVKLAYvdq 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 99 ---ALFPHMTVFENVAFGLRMQKTPAAEIAPRVtdalrMVQLEEFA----QRKPHQLSGGQQQRVAIARAVVNKPRLLLL 171
Cdd:TIGR03719 393 srdALDPNKTVWEEISGGLDIIKLGKREIPSRA-----YVGRFNFKgsdqQKKVGQLSGGERNRVHLAKTLKSGGNVLLL 467
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 16764581 172 DESLSALDYklrkqmqNELKALQRKL----GITFVfVTHD 207
Cdd:TIGR03719 468 DEPTNDLDV-------ETLRALEEALlnfaGCAVV-ISHD 499
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
31-232 |
9.88e-14 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 69.36 E-value: 9.88e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 31 EVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAEnryvnTVFQSYALFPH-MTVFEN 109
Cdd:cd03369 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLE-----DLRSSLTIIPQdPTLFSG 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 110 VafgLRMQKTPAAEIAPR-VTDALRMVQLEEfaqrkphQLSGGQQQRVAIARAVVNKPRLLLLDESLSALDY----KLRK 184
Cdd:cd03369 97 T---IRSNLDPFDEYSDEeIYGALRVSEGGL-------NLSQGQRQLLCLARALLKRPRVLVLDEATASIDYatdaLIQK 166
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 16764581 185 QMQNELKalqrklGITFVFVTHdQEEALTMSDRIVVMRNGVIEQDGTP 232
Cdd:cd03369 167 TIREEFT------NSTILTIAH-RLRTIIDYDKILVMDAGEVKEYDHP 207
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
36-235 |
1.88e-13 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 71.90 E-value: 1.88e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 36 LDLTINNGEFLTLLGPSGCGKTTVLR-LIAGLETVDaGHIMLDNQdITHVPAEnryvntvfqsyALFPHMTVFENVAFGL 114
Cdd:TIGR00957 657 ITFSIPEGALVAVVGQVGCGKSSLLSaLLAEMDKVE-GHVHMKGS-VAYVPQQ-----------AWIQNDSLRENILFGK 723
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 115 RMQKT------------PAAEIAPrvtdALRMVQLEEfaqrKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALDYKL 182
Cdd:TIGR00957 724 ALNEKyyqqvleacallPDLEILP----SGDRTEIGE----KGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHV 795
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 16764581 183 RKQMQNELKALQRKL-GITFVFVTHDQeEALTMSDRIVVMRNGVIEQDGTPREI 235
Cdd:TIGR00957 796 GKHIFEHVIGPEGVLkNKTRILVTHGI-SYLPQVDVIIVMSGGKISEMGSYQEL 848
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
24-224 |
2.10e-13 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 72.06 E-value: 2.10e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 24 SKSFDgkeVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGleTVDAGHIMLDNQdIT---HVPAE--NRYVNTVFQSY 98
Cdd:TIGR00956 71 TKTFD---ILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIAS--NTDGFHIGVEGV-ITydgITPEEikKHYRGDVVYNA 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 99 AL---FPHMTVFENVAFGLRMqKTPA--------AEIAPRVTD-ALRMVQLE---------EFAQrkphQLSGGQQQRVA 157
Cdd:TIGR00956 145 ETdvhFPHLTVGETLDFAARC-KTPQnrpdgvsrEEYAKHIADvYMATYGLShtrntkvgnDFVR----GVSGGERKRVS 219
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16764581 158 IARAVVNKPRLLLLDESLSALDYKLRKQMQNELKALQRKLGITfVFVTHDQ--EEALTMSDRIVVMRNG 224
Cdd:TIGR00956 220 IAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTT-PLVAIYQcsQDAYELFDKVIVLYEG 287
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
30-230 |
2.10e-13 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 71.73 E-value: 2.10e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 30 KEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHiMLDNQDITHVPAENRYVNTVFQSYALFphmtvFEN 109
Cdd:PTZ00243 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGR-VWAERSIAYVPQQAWIMNATVRGNILF-----FDE 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 110 vafglrmqktpaaEIAPRVTDALRMVQLE-EFAQ----------RKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSAL 178
Cdd:PTZ00243 747 -------------EDAARLADAVRVSQLEaDLAQlgggleteigEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSAL 813
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 16764581 179 DYKLRKQMQNELkALQRKLGITFVFVTHdQEEALTMSDRIVVMRNGVIEQDG 230
Cdd:PTZ00243 814 DAHVGERVVEEC-FLGALAGKTRVLATH-QVHVVPRADYVVALGDGRVEFSG 863
|
|
| 3a01203 |
TIGR00954 |
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, ... |
29-206 |
3.05e-13 |
|
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273360 [Multi-domain] Cd Length: 659 Bit Score: 70.93 E-value: 3.05e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 29 GKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLD-NQDITHVPAENRYVNTVFQSYALFPhMTVF 107
Cdd:TIGR00954 464 GDVLIESLSFEVPSGNNLLICGPNGCGKSSLFRILGELWPVYGGRLTKPaKGKLFYVPQRPYMTLGTLRDQIIYP-DSSE 542
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 108 ENVAFGLRMQKtpaaeiaprVTDALRMVQLEEFAQRK---------PHQLSGGQQQRVAIARAVVNKPRLLLLDESLSAL 178
Cdd:TIGR00954 543 DMKRRGLSDKD---------LEQILDNVQLTHILEREggwsavqdwMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAV 613
|
170 180
....*....|....*....|....*...
gi 16764581 179 DYKLRKQMQNelkaLQRKLGITFVFVTH 206
Cdd:TIGR00954 614 SVDVEGYMYR----LCREFGITLFSVSH 637
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
28-226 |
5.10e-13 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 68.76 E-value: 5.10e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 28 DGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAENrYVNTVFQSYAL---FPhm 104
Cdd:PRK15056 18 NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKN-LVAYVPQSEEVdwsFP-- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 105 TVFENVAFGLR-----MQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALD 179
Cdd:PRK15056 95 VLVEDVVMMGRyghmgWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVD 174
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 16764581 180 YKLRKQMQNELKALqRKLGITFVFVTHDQEEALTMSDRIVVMRNGVI 226
Cdd:PRK15056 175 VKTEARIISLLREL-RDEGKTMLVSTHNLGSVTEFCDYTVMVKGTVL 220
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
18-238 |
5.29e-13 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 70.54 E-value: 5.29e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 18 VLLSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDIthvpAENRYVNTVFQS 97
Cdd:NF033858 2 ARLEGVSHRYGKTVALDDVSLDIPAGCMVGLIGPDGVGKSSLLSLIAGARKIQQGRVEVLGGDM----ADARHRRAVCPR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 98 YA---------LFPHMTVFENVAFGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRL 168
Cdd:NF033858 78 IAympqglgknLYPTLSVFENLDFFGRLFGQDAAERRRRIDELLRATGLAPFADRPAGKLSGGMKQKLGLCCALIHDPDL 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 16764581 169 LLLDESLSALDYKLRKQ---MQNELKAlqRKLGITFVFVTHDQEEALTMsDRIVVMRNGVIEQDGTPREIYEE 238
Cdd:NF033858 158 LILDEPTTGVDPLSRRQfweLIDRIRA--ERPGMSVLVATAYMEEAERF-DWLVAMDAGRVLATGTPAELLAR 227
|
|
| sufC |
PRK09580 |
cysteine desulfurase ATPase component; Reviewed |
26-208 |
1.08e-12 |
|
cysteine desulfurase ATPase component; Reviewed
Pssm-ID: 181965 [Multi-domain] Cd Length: 248 Bit Score: 67.12 E-value: 1.08e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 26 SFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLE--TVDAGHIMLDNQDITHVPAENRYVNTVFQSyalFPH 103
Cdd:PRK09580 10 SVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREdyEVTGGTVEFKGKDLLELSPEDRAGEGIFMA---FQY 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 104 MTVFENVAFGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQL---------------SGGQQQRVAIARAVVNKPRL 168
Cdd:PRK09580 87 PVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLkmpedlltrsvnvgfSGGEKKRNDILQMAVLEPEL 166
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 16764581 169 LLLDESLSALDYKLRKQMQNELKALqRKLGITFVFVTHDQ 208
Cdd:PRK09580 167 CILDESDSGLDIDALKIVADGVNSL-RDGKRSFIIVTHYQ 205
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
26-231 |
1.76e-12 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 66.59 E-value: 1.76e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 26 SFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLE--TVDAGHIMLDNQDITHVPAENRY---VNTVFQSYAL 100
Cdd:CHL00131 16 SVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPayKILEGDILFKGESILDLEPEERAhlgIFLAFQYPIE 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 101 FPHMTV--FENVAFGLRMQKTPAAEIAPR-----VTDALRMVQLEE-FAQRKPHQ-LSGGQQQRVAIARAVVNKPRLLLL 171
Cdd:CHL00131 96 IPGVSNadFLRLAYNSKRKFQGLPELDPLefleiINEKLKLVGMDPsFLSRNVNEgFSGGEKKRNEILQMALLDSELAIL 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 16764581 172 DESLSALDYKLRKQMQNELKALQRKlGITFVFVTHDQEealtMSDRIV-----VMRNGVIEQDGT 231
Cdd:CHL00131 176 DETDSGLDIDALKIIAEGINKLMTS-ENSIILITHYQR----LLDYIKpdyvhVMQNGKIIKTGD 235
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
30-237 |
1.90e-12 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 68.85 E-value: 1.90e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 30 KEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGletvDAGHIMLDNQDITHVPAENRYVNTVFQSyalfphmTVFEN 109
Cdd:PLN03232 630 KPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLG----ELSHAETSSVVIRGSVAYVPQVSWIFNA-------TVREN 698
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 110 VAFGL-----RMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHqLSGGQQQRVAIARAVVNKPRLLLLDESLSALDYKLRK 184
Cdd:PLN03232 699 ILFGSdfeseRYWRAIDVTALQHDLDLLPGRDLTEIGERGVN-ISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAH 777
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 16764581 185 Q-----MQNELKalqrklGITFVFVThDQEEALTMSDRIVVMRNGVIEQDGTPREIYE 237
Cdd:PLN03232 778 QvfdscMKDELK------GKTRVLVT-NQLHFLPLMDRIILVSEGMIKEEGTFAELSK 828
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
43-224 |
3.60e-12 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 63.55 E-value: 3.60e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 43 GEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNqdithvpaenryvntvfqsyalfphmtvfenvafglrmqktpaa 122
Cdd:smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYID-------------------------------------------- 37
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 123 eiAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALDYKLRKQMQ-----NELKALQRKL 197
Cdd:smart00382 38 --GEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLlleelRLLLLLKSEK 115
|
170 180 190
....*....|....*....|....*....|..
gi 16764581 198 GITFVFVTHDQEEALTM-----SDRIVVMRNG 224
Cdd:smart00382 116 NLTVILTTNDEKDLGPAllrrrFDRRIVLLLI 147
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
15-220 |
7.33e-12 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 66.73 E-value: 7.33e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 15 SPLVLLSGISKSFDGKEvisqLDL---TINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDnQDITHVPaenRYV 91
Cdd:COG1245 339 ETLVEYPDLTKSYGGFS----LEVeggEIREGEVLGIVGPNGIGKTTFAKILAGVLKPDEGEVDED-LKISYKP---QYI 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 92 NTVFqsyalfpHMTVFENvafgLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLL 171
Cdd:COG1245 411 SPDY-------DGTVEEF----LRSANTDDFGSSYYKTEIIKPLGLEKLLDKNVKDLSGGELQRVAIAACLSRDADLYLL 479
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 16764581 172 DESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDqeeaLTM----SDRIVV 220
Cdd:COG1245 480 DEPSAHLDVEQRLAVAKAIRRFAENRGKTAMVVDHD----IYLidyiSDRLMV 528
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
20-224 |
7.46e-12 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 66.29 E-value: 7.46e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 20 LSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDI---THVPAENRYVNTVFQ 96
Cdd:PRK10982 1 MSNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIdfkSSKEALENGISMVHQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 97 SYALFPHMTVFENVAFGLRMQKTPAAEIAPRVTDALRM---VQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDE 173
Cdd:PRK10982 81 ELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIfdeLDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDE 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 16764581 174 SLSALDYKLRKQMQNELKALQRKlGITFVFVTHDQEEALTMSDRIVVMRNG 224
Cdd:PRK10982 161 PTSSLTEKEVNHLFTIIRKLKER-GCGIVYISHKMEEIFQLCDEITILRDG 210
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
22-224 |
8.68e-12 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 66.35 E-value: 8.68e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 22 GISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLE---TVDaGHIMLDNQ-----DITHvpAENRYVNT 93
Cdd:NF040905 6 GITKTFPGVKALDDVNLSVREGEIHALCGENGAGKSTLMKVLSGVYphgSYE-GEILFDGEvcrfkDIRD--SEALGIVI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 94 VFQSYALFPHMTVFENVAFGlrmqktpaAEIAP-----------RVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAV 162
Cdd:NF040905 83 IHQELALIPYLSIAENIFLG--------NERAKrgvidwnetnrRARELLAKVGLDESPDTLVTDIGVGKQQLVEIAKAL 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 16764581 163 VNKPRLLLLDESLSALDYKLRKQMQNELKALqRKLGITFVFVTHDQEEALTMSDRIVVMRNG 224
Cdd:NF040905 155 SKDVKLLILDEPTAALNEEDSAALLDLLLEL-KAQGITSIIISHKLNEIRRVADSITVLRDG 215
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
31-254 |
1.24e-11 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 65.21 E-value: 1.24e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 31 EVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLET----VDAGHIMLDNQDITHVPAENRY------VNTVFQ--SY 98
Cdd:PRK15093 21 KAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKdnwrVTADRMRFDDIDLLRLSPRERRklvghnVSMIFQepQS 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 99 ALFPHMTVFENVA---------------FGLRmqKTPAAEIAPRV-----TDALRMVqleefaqrkPHQLSGGQQQRVAI 158
Cdd:PRK15093 101 CLDPSERVGRQLMqnipgwtykgrwwqrFGWR--KRRAIELLHRVgikdhKDAMRSF---------PYELTEGECQKVMI 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 159 ARAVVNKPRLLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYEE 238
Cdd:PRK15093 170 AIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKELVTT 249
|
250
....*....|....*.
gi 16764581 239 PKNLFVAGFIGEINRF 254
Cdd:PRK15093 250 PHHPYTQALIRAIPDF 265
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
11-220 |
1.62e-11 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 65.60 E-value: 1.62e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 11 PRSLS---PLVLLSGISKSFDGkeviSQLDL---TINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDnQDITHV 84
Cdd:PRK13409 331 PRDESereTLVEYPDLTKKLGD----FSLEVeggEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-LKISYK 405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 85 PaenRYVNTVFqsyalfpHMTVFENvafgLRMQkTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVN 164
Cdd:PRK13409 406 P---QYIKPDY-------DGTVEDL----LRSI-TDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSR 470
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 165 KPRLLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDqeeaLTM----SDRIVV 220
Cdd:PRK13409 471 DADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHD----IYMidyiSDRLMV 526
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
17-226 |
1.75e-11 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 65.36 E-value: 1.75e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 17 LVLLSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDnQDIThvpaenryVNTVFQ 96
Cdd:PRK11147 3 LISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYE-QDLI--------VARLQQ 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 97 SYALFPHMTVFENVAFGLRMQktpaAEIAPRVTDALRMV----------QLEEFAQRKPHQ------------------- 147
Cdd:PRK11147 74 DPPRNVEGTVYDFVAEGIEEQ----AEYLKRYHDISHLVetdpseknlnELAKLQEQLDHHnlwqlenrinevlaqlgld 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 148 -------LSGGQQQRVAIARAVVNKPRLLLLDESLSALDYKLRKQMQNELKALQRklgiTFVFVTHDQEEALTMSDRIVV 220
Cdd:PRK11147 150 pdaalssLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQG----SIIFISHDRSFIRNMATRIVD 225
|
....*.
gi 16764581 221 MRNGVI 226
Cdd:PRK11147 226 LDRGKL 231
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
20-207 |
3.15e-11 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 64.57 E-value: 3.15e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 20 LSGISKSFD-GKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMldnqdithvPAENRYVNTVFQSY 98
Cdd:TIGR03719 7 MNRVSKVVPpKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKDFNGEAR---------PQPGIKVGYLPQEP 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 99 ALFPHMTVFENVAFGlrMQKTPAA-----EIAPRVTD--------ALRMVQLEEF------------------AQRKP-- 145
Cdd:TIGR03719 78 QLDPTKTVRENVEEG--VAEIKDAldrfnEISAKYAEpdadfdklAAEQAELQEIidaadawdldsqleiamdALRCPpw 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 16764581 146 ----HQLSGGQQQRVAIARAVVNKPRLLLLDESLSALDYKLRKQMQNelkALQRKLGiTFVFVTHD 207
Cdd:TIGR03719 156 dadvTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLER---HLQEYPG-TVVAVTHD 217
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
26-273 |
5.31e-11 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 64.55 E-value: 5.31e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 26 SFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQdITHVPaenryvntvfQSYALFPHmT 105
Cdd:TIGR01271 435 SLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGR-ISFSP----------QTSWIMPG-T 502
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 106 VFENVAFGLRMQKTpaaeiapRVTDALRMVQLEEFAQRKPHQ-----------LSGGQQQRVAIARAVVNKPRLLLLDES 174
Cdd:TIGR01271 503 IKDNIIFGLSYDEY-------RYTSVIKACQLEEDIALFPEKdktvlgeggitLSGGQRARISLARAVYKDADLYLLDSP 575
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 175 LSALDYKLRKQMQNE--LKALQRKlgiTFVFVTHDQEEaLTMSDRIVVMRNGVIEQDGTPREIYEEPKNlFVAGFIGeIN 252
Cdd:TIGR01271 576 FTHLDVVTEKEIFESclCKLMSNK---TRILVTSKLEH-LKKADKILLLHEGVCYFYGTFSELQAKRPD-FSSLLLG-LE 649
|
250 260
....*....|....*....|....*
gi 16764581 253 RFDATVIER----LDEQRVRASVEG 273
Cdd:TIGR01271 650 AFDNFSAERrnsiLTETLRRVSIDG 674
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
31-199 |
6.36e-11 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 64.28 E-value: 6.36e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 31 EVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIML-DNQDITHVPAE--NRYVNTVFQSYALFPHmTVF 107
Cdd:PTZ00265 399 EIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIInDSHNLKDINLKwwRSKIGVVSQDPLLFSN-SIK 477
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 108 ENVAFGLR----------------------------------------MQKTPAAEIA-----------PRVTDALRMVQ 136
Cdd:PTZ00265 478 NNIKYSLYslkdlealsnyynedgndsqenknkrnscrakcagdlndmSNTTDSNELIemrknyqtikdSEVVDVSKKVL 557
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 16764581 137 LEEFAQRKP-----------HQLSGGQQQRVAIARAVVNKPRLLLLDESLSALDYK---LRKQMQNELKALQRKLGI 199
Cdd:PTZ00265 558 IHDFVSALPdkyetlvgsnaSKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKseyLVQKTINNLKGNENRITI 634
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
32-238 |
7.48e-11 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 63.81 E-value: 7.48e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 32 VISQLDLTINNGEFLTLLGPSGCGKTTV-LRLIAGLETVDaGHIMLDNQDITHVPAEN-RYVNTVF-QSYALFphmtvfe 108
Cdd:TIGR00957 1301 VLRHINVTIHGGEKVGIVGRTGAGKSSLtLGLFRINESAE-GEIIIDGLNIAKIGLHDlRFKITIIpQDPVLF------- 1372
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 109 nvAFGLRMQKTPAAEIAPR-VTDALRMVQLEEFAQRKP----HQ-------LSGGQQQRVAIARAVVNKPRLLLLDESLS 176
Cdd:TIGR00957 1373 --SGSLRMNLDPFSQYSDEeVWWALELAHLKTFVSALPdkldHEcaeggenLSVGQRQLVCLARALLRKTKILVLDEATA 1450
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 16764581 177 ALDYKLRKQMQNELKALQRKlgITFVFVTHDQEEALTMSdRIVVMRNGVIEQDGTPREIYEE 238
Cdd:TIGR00957 1451 AVDLETDNLIQSTIRTQFED--CTVLTIAHRLNTIMDYT-RVIVLDKGEVAEFGAPSNLLQQ 1509
|
|
| ABCC_CFTR1 |
cd03291 |
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The ... |
29-261 |
2.97e-10 |
|
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213258 [Multi-domain] Cd Length: 282 Bit Score: 60.64 E-value: 2.97e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 29 GKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQdITHVPaenryvntvfQSYALFPHmTVFE 108
Cdd:cd03291 49 GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGR-ISFSS----------QFSWIMPG-TIKE 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 109 NVAFGLRMQKTpaaeiapRVTDALRMVQLEEFAQRKPHQ-----------LSGGQQQRVAIARAVVNKPRLLLLDESLSA 177
Cdd:cd03291 117 NIIFGVSYDEY-------RYKSVVKACQLEEDITKFPEKdntvlgeggitLSGGQRARISLARAVYKDADLYLLDSPFGY 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 178 LDYKLRKQMQNE--LKALQRKlgiTFVFVTHDQEEaLTMSDRIVVMRNGVIEQDGTPREIYEEPKNlFVAGFIGeINRFD 255
Cdd:cd03291 190 LDVFTEKEIFEScvCKLMANK---TRILVTSKMEH-LKKADKILILHEGSSYFYGTFSELQSLRPD-FSSKLMG-YDTFD 263
|
....*.
gi 16764581 256 ATVIER 261
Cdd:cd03291 264 QFSAER 269
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
22-179 |
4.11e-10 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 61.29 E-value: 4.11e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 22 GISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHImldnqdithvpaenRYVNTVFQSY--- 98
Cdd:PRK11819 329 NLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTI--------------KIGETVKLAYvdq 394
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 99 ---ALFPHMTVFENVAFGLRMQKTPAAEIAPRV---------TDalrmvQleefaQRKPHQLSGGQQQRVAIARAVVNKP 166
Cdd:PRK11819 395 srdALDPNKTVWEEISGGLDIIKVGNREIPSRAyvgrfnfkgGD-----Q-----QKKVGVLSGGERNRLHLAKTLKQGG 464
|
170
....*....|...
gi 16764581 167 RLLLLDESLSALD 179
Cdd:PRK11819 465 NVLLLDEPTNDLD 477
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
16-211 |
5.29e-10 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 60.80 E-value: 5.29e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 16 PLVLLSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGletvD-----AGHIMLDNQ---------DI 81
Cdd:PRK10938 259 PRIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITG----DhpqgySNDLTLFGRrrgsgetiwDI 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 82 T-HVPaenrYVntvfqSYALfpHM-----TVFENV-------AFGLRMQktpaaeiaprVTDALRM--------VQLEEF 140
Cdd:PRK10938 335 KkHIG----YV-----SSSL--HLdyrvsTSVRNVilsgffdSIGIYQA----------VSDRQQKlaqqwldiLGIDKR 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 141 AQRKP-HQLSGGQQQRVAIARAVVNKPRLLLLDESLSALDyklrkqmqnelkALQRKLGITFV------------FVTHD 207
Cdd:PRK10938 394 TADAPfHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLD------------PLNRQLVRRFVdvlisegetqllFVSHH 461
|
....
gi 16764581 208 QEEA 211
Cdd:PRK10938 462 AEDA 465
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
5-273 |
9.70e-10 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 59.36 E-value: 9.70e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 5 KKLNNQPRSLsplVLLSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVlRLIAGLETVDAGH-------IMLD 77
Cdd:NF000106 4 KTISNGARNA---VEVRGLVKHFGEVKAVDGVDLDVREGTVLGVLGP*GAA**RG-ALPAHV*GPDAGRrpwrf*tWCAN 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 78 NQDITHVPAENRYVNTVFQSyalfpHMTVFENVAFGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVA 157
Cdd:NF000106 80 RRALRRTIG*HRPVR*GRRE-----SFSGRENLYMIGR*LDLSRKDARARADELLERFSLTEAAGRAAAKYSGGMRRRLD 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 158 IARAVVNKPRLLLLDESLSALDYKLRKQMQNELKALQRKlGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYE 237
Cdd:NF000106 155 LAASMIGRPAVLYLDEPTTGLDPRTRNEVWDEVRSMVRD-GATVLLTTQYMEEAEQLAHELTVIDRGRVIADGKVDELKT 233
|
250 260 270
....*....|....*....|....*....|....*.
gi 16764581 238 EpknlfVAGFIGEINRFDATVIERLDEQRVRASVEG 273
Cdd:NF000106 234 K-----VGGRTLQIRPAHAAELDRMVGAIAQAGLDG 264
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
26-240 |
1.29e-09 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 59.41 E-value: 1.29e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 26 SFDGKEViSQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDIT------HVPAENRYVNTVFQSYA 99
Cdd:PRK09700 273 SRDRKKV-RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISprspldAVKKGMAYITESRRDNG 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 100 LFPHMTVFENVAFgLRMQKTPAAEIAPRVTDALRMVQLEEfAQRKP------------HQLSGGQQQRVAIARAVVNKPR 167
Cdd:PRK09700 352 FFPNFSIAQNMAI-SRSLKDGGYKGAMGLFHEVDEQRTAE-NQRELlalkchsvnqniTELSGGNQQKVLISKWLCCCPE 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 168 LLLLDESLSALD-------YKLRKQMQNElkalqrklGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYEEPK 240
Cdd:PRK09700 430 VIIFDEPTRGIDvgakaeiYKVMRQLADD--------GKVILMVSSELPEIITVCDRIAVFCEGRLTQILTNRDDMSEEE 501
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
43-179 |
1.42e-09 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 57.25 E-value: 1.42e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 43 GEFLTLLGPSGCGKTTVLRLIAGLET--VDAGHIMLDNQDIThvPAENRYVNTVFQSYALFPHMTVFENVAFglrmqktp 120
Cdd:cd03232 33 GTLTALMGESGAGKTTLLDVLAGRKTagVITGEILINGRPLD--KNFQRSTGYVEQQDVHSPNLTVREALRF-------- 102
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 16764581 121 aaeiaprvTDALRMVQLEefaQRKphqlsggqqqRVAIARAVVNKPRLLLLDESLSALD 179
Cdd:cd03232 103 --------SALLRGLSVE---QRK----------RLTIGVELAAKPSILFLDEPTSGLD 140
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
29-229 |
2.35e-09 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 58.79 E-value: 2.35e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 29 GKEVISQLDLTINNGEFLTLLGPSGCGKT-TVLRLIAGLETVDAGHIMLDNQDIT-------------HVPaENRyvntv 94
Cdd:PRK13549 274 HIKRVDDVSFSLRRGEILGIAGLVGAGRTeLVQCLFGAYPGRWEGEIFIDGKPVKirnpqqaiaqgiaMVP-EDR----- 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 95 fQSYALFPHMTVFENVAFGLRMQKTPAAeiapRVTDALRMVQLEEFAQR------KPHQ----LSGGQQQRVAIARAVVN 164
Cdd:PRK13549 348 -KRDGIVPVMGVGKNITLAALDRFTGGS----RIDDAAELKTILESIQRlkvktaSPELaiarLSGGNQQKAVLAKCLLL 422
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16764581 165 KPRLLLLDESLSALD----YKLRKQMqNELKalqrKLGITFVFVTHDQEEALTMSDRIVVMRNGVIEQD 229
Cdd:PRK13549 423 NPKILILDEPTRGIDvgakYEIYKLI-NQLV----QQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGD 486
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
33-229 |
2.81e-09 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 58.68 E-value: 2.81e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 33 ISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGL-ETVDAGHIMLDN-------------QDITHVPaENRyvntvfQSY 98
Cdd:TIGR02633 276 VDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAyPGKFEGNVFINGkpvdirnpaqairAGIAMVP-EDR------KRH 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 99 ALFPHMTVFENV------AFGLRMQKTPAAEIAPrVTDALRMVQLEEFAQRKP-HQLSGGQQQRVAIARAVVNKPRLLLL 171
Cdd:TIGR02633 349 GIVPILGVGKNItlsvlkSFCFKMRIDAAAELQI-IGSAIQRLKVKTASPFLPiGRLSGGNQQKAVLAKMLLTNPRVLIL 427
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 16764581 172 DESLSALDYKLRKQMQNELKALQRKlGITFVFVTHDQEEALTMSDRIVVMRNGVIEQD 229
Cdd:TIGR02633 428 DEPTRGVDVGAKYEIYKLINQLAQE-GVAIIVVSSELAEVLGLSDRVLVIGEGKLKGD 484
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
32-243 |
4.98e-09 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 58.06 E-value: 4.98e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 32 VISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAEN--RYVNTVFQSYALFPHMtvfen 109
Cdd:PLN03232 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDlrRVLSIIPQSPVLFSGT----- 1325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 110 vafgLRMQKTPAAEIA-PRVTDALRMVQLEEFAQRKPHQL-----------SGGQQQRVAIARAVVNKPRLLLLDESLSA 177
Cdd:PLN03232 1326 ----VRFNIDPFSEHNdADLWEALERAHIKDVIDRNPFGLdaevseggenfSVGQRQLLSLARALLRRSKILVLDEATAS 1401
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 16764581 178 LDYKLRKQMQNELKALQRKlgITFVFVTHdQEEALTMSDRIVVMRNGVIEQDGTPREIYEEPKNLF 243
Cdd:PLN03232 1402 VDVRTDSLIQRTIREEFKS--CTMLVIAH-RLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAF 1464
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
16-179 |
5.97e-08 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 54.48 E-value: 5.97e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 16 PLVLLSGISKSFDGKEVI-SQLDLTINNGEFLTLLGPSGCGKTTVLRLIAG-LETVDAghimldnqdithvpaenryvnT 93
Cdd:PLN03073 507 PIISFSDASFGYPGGPLLfKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGeLQPSSG---------------------T 565
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 94 VFQSYALfpHMTVF-ENVAFGLRMQKTPAAEIA---PRVTDALRMVQLEEF------AQRKPHQLSGGQQQRVAIARAVV 163
Cdd:PLN03073 566 VFRSAKV--RMAVFsQHHVDGLDLSSNPLLYMMrcfPGVPEQKLRAHLGSFgvtgnlALQPMYTLSGGQKSRVAFAKITF 643
|
170
....*....|....*.
gi 16764581 164 NKPRLLLLDESLSALD 179
Cdd:PLN03073 644 KKPHILLLDEPSNHLD 659
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
48-207 |
8.10e-08 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 53.97 E-value: 8.10e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 48 LLGPSGCGKTTVLRLIAGLETVDAGHImldnqdithVPAENRYVNTVFQSYALFPHMTVFENVAFGLRMQK--------- 118
Cdd:PRK11819 38 VLGLNGAGKSTLLRIMAGVDKEFEGEA---------RPAPGIKVGYLPQEPQLDPEKTVRENVEEGVAEVKaaldrfnei 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 119 -----TPAAEiaprvTDAL--RMVQLEEF------------------AQRKPH------QLSGGQQQRVAIARAVVNKPR 167
Cdd:PRK11819 109 yaayaEPDAD-----FDALaaEQGELQEIidaadawdldsqleiamdALRCPPwdakvtKLSGGERRRVALCRLLLEKPD 183
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 16764581 168 LLLLDESlsaldyklrkqmQNELKA---------LQRKLGiTFVFVTHD 207
Cdd:PRK11819 184 MLLLDEP------------TNHLDAesvawleqfLHDYPG-TVVAVTHD 219
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
10-227 |
2.68e-07 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 52.48 E-value: 2.68e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 10 QPRSL-SPLVLLSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLdnqdithvpAEN 88
Cdd:PRK10636 304 APESLpNPLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGL---------AKG 374
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 89 RYVNTVFQsyalfpHMTVFenvafgLRMQKTP---AAEIAPRVTDAlrmvQLEEF----------AQRKPHQLSGGQQQR 155
Cdd:PRK10636 375 IKLGYFAQ------HQLEF------LRADESPlqhLARLAPQELEQ----KLRDYlggfgfqgdkVTEETRRFSGGEKAR 438
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 16764581 156 VAIARAVVNKPRLLLLDESLSALDYKLRKQMQNELKALQRKLgitfVFVTHDQEEALTMSDRIVVMRNGVIE 227
Cdd:PRK10636 439 LVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGAL----VVVSHDRHLLRSTTDDLYLVHDGKVE 506
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
43-260 |
2.70e-07 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 51.21 E-value: 2.70e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 43 GEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMlDNQDITHVPAENRyvNTVFQSYalfphmtvFENVAFG-LRMQKTPA 121
Cdd:cd03236 26 GQVLGLVGPNGIGKSTALKILAGKLKPNLGKFD-DPPDWDEILDEFR--GSELQNY--------FTKLLEGdVKVIVKPQ 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 122 -AEIAPRVTDA------------------LRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALDYKL 182
Cdd:cd03236 95 yVDLIPKAVKGkvgellkkkdergkldelVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQ 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 183 RKQMQNELKALQRKlGITFVFVTHDQEEALTMSDRIVVMRN-----GVIEQDGTPRE-IyeepkNLFVAGFIGEIN-RFD 255
Cdd:cd03236 175 RLNAARLIRELAED-DNYVLVVEHDLAVLDYLSDYIHCLYGepgayGVVTLPKSVREgI-----NEFLDGYLPTENmRFR 248
|
....*
gi 16764581 256 ATVIE 260
Cdd:cd03236 249 EESIE 253
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
40-220 |
3.06e-07 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 49.88 E-value: 3.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 40 INNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPaenRYVNtvfqsyalfphmtvfenvafglrmqkt 119
Cdd:cd03222 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKP---QYID--------------------------- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 120 paaeiaprvtdalrmvqleefaqrkphqLSGGQQQRVAIARAVVNKPRLLLLDESLSALDYKLRKQMQNELKALQRKLGI 199
Cdd:cd03222 72 ----------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKK 123
|
170 180
....*....|....*....|.
gi 16764581 200 TFVFVTHDQEEALTMSDRIVV 220
Cdd:cd03222 124 TALVVEHDLAVLDYLSDRIHV 144
|
|
| ABCC_SUR2 |
cd03288 |
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The ... |
30-243 |
4.04e-07 |
|
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213255 [Multi-domain] Cd Length: 257 Bit Score: 50.68 E-value: 4.04e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 30 KEVISQLDLTINNGEFLTLLGPSGCGKTTVLrlIAGLETVDA--GHIMLDNQDITHVPAEN--RYVNTVFQSYALFPHmt 105
Cdd:cd03288 34 KPVLKHVKAYIKPGQKVGICGRTGSGKSSLS--LAFFRMVDIfdGKIVIDGIDISKLPLHTlrSRLSIILQDPILFSG-- 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 106 vfeNVAFGLRMQKTPAAEiapRVTDALRMVQLEEFAQRKPHQL-----------SGGQQQRVAIARAVVNKPRLLLLDES 174
Cdd:cd03288 110 ---SIRFNLDPECKCTDD---RLWEALEIAQLKNMVKSLPGGLdavvteggenfSVGQRQLFCLARAFVRKSSILIMDEA 183
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 175 LSALDYKLRKQMQN-ELKALQRKlgiTFVFVTHDQEEALTmSDRIVVMRNGVIEQDGTPREIYEEPKNLF 243
Cdd:cd03288 184 TASIDMATENILQKvVMTAFADR---TVVTIAHRVSTILD-ADLVLVLSRGILVECDTPENLLAQEDGVF 249
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
28-179 |
4.30e-07 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 52.22 E-value: 4.30e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 28 DGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDaGHIMLDNqdithVPAENRYVNTVFQSYALFPHMTVF 107
Cdd:TIGR01271 1230 AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTE-GEIQIDG-----VSWNSVTLQTWRKAFGVIPQKVFI 1303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 108 ENVAFglRMQKTPAAEIAP----RVTD--ALRMVqLEEFAQRKPHQL-------SGGQQQRVAIARAVVNKPRLLLLDES 174
Cdd:TIGR01271 1304 FSGTF--RKNLDPYEQWSDeeiwKVAEevGLKSV-IEQFPDKLDFVLvdggyvlSNGHKQLMCLARSILSKAKILLLDEP 1380
|
....*
gi 16764581 175 LSALD 179
Cdd:TIGR01271 1381 SAHLD 1385
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
20-179 |
5.71e-07 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 51.49 E-value: 5.71e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 20 LSGISKSFDGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHImldnqditHVPA--ENRYvntvFQS 97
Cdd:PRK11147 322 MENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRI--------HCGTklEVAY----FDQ 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 98 Y--ALFPHMTVFENVAFGlrmQKTpaAEIAPRVTDALRMVQLEEFAQRKPHQ----LSGGQQQRVAIARAVVNKPRLLLL 171
Cdd:PRK11147 390 HraELDPEKTVMDNLAEG---KQE--VMVNGRPRHVLGYLQDFLFHPKRAMTpvkaLSGGERNRLLLARLFLKPSNLLIL 464
|
....*...
gi 16764581 172 DESLSALD 179
Cdd:PRK11147 465 DEPTNDLD 472
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
32-243 |
7.33e-07 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 51.32 E-value: 7.33e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 32 VISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAEN--RYVNTVFQSYALFPHmTVFEN 109
Cdd:PTZ00243 1325 VLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRElrRQFSMIPQDPVLFDG-TVRQN 1403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 110 V-AFglrMQKTPAaeiapRVTDALRMVQLEEFAQRKPHQL-----------SGGQQQRVAIARAVVNKPR-LLLLDESLS 176
Cdd:PTZ00243 1404 VdPF---LEASSA-----EVWAALELVGLRERVASESEGIdsrvleggsnySVGQRQLMCMARALLKKGSgFILMDEATA 1475
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 16764581 177 ALDYKLRKQMQNE-LKALQRKLGITFVFVTHdqeeALTMSDRIVVMRNGVIEQDGTPREIYEEPKNLF 243
Cdd:PTZ00243 1476 NIDPALDRQIQATvMSAFSAYTVITIAHRLH----TVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIF 1539
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
37-238 |
9.58e-07 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 50.40 E-value: 9.58e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 37 DLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAE--NRYVNTVFQ---SYALFPhmtvfENVA 111
Cdd:PRK10938 23 SLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEqlQKLVSDEWQrnnTDMLSP-----GEDD 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 112 FGlrmqKTPAAEIAPRVTDALRMVQLEEFAQ------RKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALDYKLRKQ 185
Cdd:PRK10938 98 TG----RTTAEIIQDEVKDPARCEQLAQQFGitalldRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQ 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 16764581 186 MQNELKALQRKlGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYEE 238
Cdd:PRK10938 174 LAELLASLHQS-GITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQ 225
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
43-221 |
1.02e-06 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 50.58 E-value: 1.02e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 43 GEFLTLLGPSGCGKTTVLRLIAGletvdaghIMLDNQDITHVPAE-----NRYVNTVFQSYalfphmtvFENVAFG-LR- 115
Cdd:PRK13409 99 GKVTGILGPNGIGKTTAVKILSG--------ELIPNLGDYEEEPSwdevlKRFRGTELQNY--------FKKLYNGeIKv 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 116 MQKTPAAEIAPR-----VTDALRMV-------------QLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSA 177
Cdd:PRK13409 163 VHKPQYVDLIPKvfkgkVRELLKKVdergkldevverlGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSY 242
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 16764581 178 LDYKLRKQMQNELKALQRklGITFVFVTHDqeeaLT----MSDRIVVM 221
Cdd:PRK13409 243 LDIRQRLNVARLIRELAE--GKYVLVVEHD----LAvldyLADNVHIA 284
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
43-224 |
1.18e-06 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 50.11 E-value: 1.18e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 43 GEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAeNRYVNTVF-------QSYALFPHMTV-FENVAFGL 114
Cdd:PRK10982 274 GEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNA-NEAINHGFalvteerRSTGIYAYLDIgFNSLISNI 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 115 RMQKTPAAEIAPR--------VTDALRMvqleefaqRKPHQ------LSGGQQQRVAIARAVVNKPRLLLLDESLSALD- 179
Cdd:PRK10982 353 RNYKNKVGLLDNSrmksdtqwVIDSMRV--------KTPGHrtqigsLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDv 424
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 16764581 180 ------YKLRKQMQNELKalqrklGItfVFVTHDQEEALTMSDRIVVMRNG 224
Cdd:PRK10982 425 gakfeiYQLIAELAKKDK------GI--IIISSEMPELLGITDRILVMSNG 467
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
35-222 |
3.01e-06 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 46.97 E-value: 3.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 35 QLDLTINNGEFLTLLGPSGCGKTTVLRLIAgletvdaghimldnqdithvpaenryvntvfqsYALFPHMTVFENVAFGL 114
Cdd:cd03227 13 PNDVTFGEGSLTIITGPNGSGKSTILDAIG---------------------------------LALGGAQSATRRRSGVK 59
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 115 RMQKTPAAEIAPRVTDalrmvqleefaqrkpHQLSGGQQQRVAIARAVVN---KPR-LLLLDESLSALDyklrkqMQNEL 190
Cdd:cd03227 60 AGCIVAAVSAELIFTR---------------LQLSGGEKELSALALILALaslKPRpLYILDEIDRGLD------PRDGQ 118
|
170 180 190
....*....|....*....|....*....|....*..
gi 16764581 191 KAL-----QRKLGITFVFVTHDQEEALtMSDRIVVMR 222
Cdd:cd03227 119 ALAeaileHLVKGAQVIVITHLPELAE-LADKLIHIK 154
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
43-224 |
6.34e-06 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 48.18 E-value: 6.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 43 GEFLTLLGPSGCGKTTVLRLIAglETVDAGHIMLDNQDITHVPAEN---RYVNTVFQSYALFPHMTVFENVAFGLRM--- 116
Cdd:TIGR00956 789 GTLTALMGASGAGKTTLLNVLA--ERVTTGVITGGDRLVNGRPLDSsfqRSIGYVQQQDLHLPTSTVRESLRFSAYLrqp 866
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 117 QKTPAAEIAPRVTDALRMVQLEEFAQR---KPHQ-LSGGQQQRVAIARAVVNKPRLLL-LDESLSALDyklrKQMQNELK 191
Cdd:TIGR00956 867 KSVSKSEKMEYVEEVIKLLEMESYADAvvgVPGEgLNVEQRKRLTIGVELVAKPKLLLfLDEPTSGLD----SQTAWSIC 942
|
170 180 190
....*....|....*....|....*....|....*...
gi 16764581 192 ALQRKL---GITFVFVTHdQEEALTMS--DRIVVMRNG 224
Cdd:TIGR00956 943 KLMRKLadhGQAILCTIH-QPSAILFEefDRLLLLQKG 979
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
43-221 |
8.60e-06 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 47.47 E-value: 8.60e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 43 GEFLTLLGPSGCGKTTVLRLIAGletvdaghIMLDNQDITHVPAE-----NRYVNTVFQSYalfphmtvFENVAFG-LRM 116
Cdd:COG1245 99 GKVTGILGPNGIGKSTALKILSG--------ELKPNLGDYDEEPSwdevlKRFRGTELQDY--------FKKLANGeIKV 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 117 -QKTPAAEIAPRVTD--------------ALRMV----QLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSA 177
Cdd:COG1245 163 aHKPQYVDLIPKVFKgtvrellekvdergKLDELaeklGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPSSY 242
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 16764581 178 LDYKLRKQMQNELKALQRKlGITFVFVTHDqeeaLT----MSDRIVVM 221
Cdd:COG1245 243 LDIYQRLNVARLIRELAEE-GKYVLVVEHD----LAildyLADYVHIL 285
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
33-267 |
1.12e-05 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 47.19 E-value: 1.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 33 ISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHImldnqDITHVPAenryvnTVFQSYALFPHMTVFENVAF 112
Cdd:PRK13545 40 LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTV-----DIKGSAA------LIAISSGLNGQLTGIENIEL 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 113 -GLRM--QKTPAAEIAPRVTDalrMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALDYKLRKQMQNE 189
Cdd:PRK13545 109 kGLMMglTKEKIKEIIPEIIE---FADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDK 185
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 16764581 190 LKALQRKlGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREIYEEPKNlfvagFIGEINRFDATVIERLDEQRV 267
Cdd:PRK13545 186 MNEFKEQ-GKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHYDE-----FLKKYNQMSVEERKDFREEQI 257
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
33-221 |
5.85e-05 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 43.47 E-value: 5.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 33 ISQLDLTINNGEFLTLLGPSGCGKTTVLrliagletvdaghimldnQDITHVPAENRYVNTVfqsYALFPHMTVF-ENVA 111
Cdd:cd03238 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLV------------------NEGLYASGKARLISFL---PKFSRNKLIFiDQLQ 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 112 FGLRMqktpaaeiaprvtdALRMVQLEefaqRKPHQLSGGQQQRVAIAR--AVVNKPRLLLLDESLSALDYKLRKQMQNE 189
Cdd:cd03238 70 FLIDV--------------GLGYLTLG----QKLSTLSGGELQRVKLASelFSEPPGTLFILDEPSTGLHQQDINQLLEV 131
|
170 180 190
....*....|....*....|....*....|..
gi 16764581 190 LKALqRKLGITFVFVTHDqEEALTMSDRIVVM 221
Cdd:cd03238 132 IKGL-IDLGNTVILIEHN-LDVLSSADWIIDF 161
|
|
| TOBE_2 |
pfam08402 |
TOBE domain; The TOBE domain (Transport-associated OB) always occurs as a dimer as the ... |
292-372 |
1.03e-04 |
|
TOBE domain; The TOBE domain (Transport-associated OB) always occurs as a dimer as the C-terminal strand of each domain is supplied by the partner. Probably involved in the recognition of small ligands such as molybdenum and sulphate. Found in ABC transporters immediately after the ATPase domain. In this family a strong RPE motif is found at the presumed N-terminus of the domain.
Pssm-ID: 462465 [Multi-domain] Cd Length: 73 Bit Score: 40.30 E-value: 1.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 292 VLLRPEDLRVEEinDDNHIEGLigyVRERNYKGMTLESVVELENGKMVMVSEFFNEDDPdfdHSLDQKMAISWVESWEVV 371
Cdd:pfam08402 1 LAIRPEKIRLAA--AANGLSGT---VTDVEYLGDHTRYHVELAGGEELVVRVPNAHARP---PAPGDRVGLGWDPEDAHV 72
|
.
gi 16764581 372 L 372
Cdd:pfam08402 73 L 73
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
88-242 |
1.17e-04 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 44.23 E-value: 1.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 88 NRYVNTVF---QSYALFPHMTVFENVAF--GLRM---QKTPAAEIAPRVTDALRM---VQLEEFA-QRKPHQLSGGQQQR 155
Cdd:TIGR00630 417 KPEALAVTvggKSIADVSELSIREAHEFfnQLTLtpeEKKIAEEVLKEIRERLGFlidVGLDYLSlSRAAGTLSGGEAQR 496
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 156 VAIARAV------VnkprLLLLDESLSALDYKLRKQMQNELKALqRKLGITFVFVTHDqEEALTMSDRIVVM------RN 223
Cdd:TIGR00630 497 IRLATQIgsgltgV----LYVLDEPSIGLHQRDNRRLINTLKRL-RDLGNTLIVVEHD-EDTIRAADYVIDIgpgageHG 570
|
170
....*....|....*....
gi 16764581 224 GVIEQDGTPREIYEEPKNL 242
Cdd:TIGR00630 571 GEVVASGTPEEILANPDSL 589
|
|
| ABCC_CFTR2 |
cd03289 |
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator ... |
28-228 |
2.11e-04 |
|
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213256 [Multi-domain] Cd Length: 275 Bit Score: 42.53 E-value: 2.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 28 DGKEVISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDaGHIMLDNQDITHVPAENRYvntvfQSYALFPHMTVF 107
Cdd:cd03289 15 GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-GDIQIDGVSWNSVPLQKWR-----KAFGVIPQKVFI 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 108 ENVAFglRMQKTP----AAEIAPRVTD--ALRMVqLEEFAQRKPHQL-------SGGQQQRVAIARAVVNKPRLLLLDES 174
Cdd:cd03289 89 FSGTF--RKNLDPygkwSDEEIWKVAEevGLKSV-IEQFPGQLDFVLvdggcvlSHGHKQLMCLARSVLSKAKILLLDEP 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 16764581 175 LSALDYKLRKQMQNELKalQRKLGITFVFVTHdQEEALTMSDRIVVMRNGVIEQ 228
Cdd:cd03289 166 SAHLDPITYQVIRKTLK--QAFADCTVILSEH-RIEAMLECQRFLVIEENKVRQ 216
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
33-266 |
2.91e-04 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 42.11 E-value: 2.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 33 ISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQdithvpaenryVNTVFQSYALFPHMTVFENVAF 112
Cdd:PRK13546 40 LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGE-----------VSVIAISAGLSGQLTGIENIEF 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 113 GLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALDYKLRKQMQNELKA 192
Cdd:PRK13546 109 KMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYE 188
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 16764581 193 LQRKlGITFVFVTHDQEEALTMSDRIVVMRNGVIEQDGTPREI---YEEPKNLFVAGFIGEINRFDatviERLDEQR 266
Cdd:PRK13546 189 FKEQ-NKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVlpkYEAFLNDFKKKSKAEQKEFR----NKLDESR 260
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
139-209 |
9.06e-04 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 41.38 E-value: 9.06e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 16764581 139 EFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALDYKLRKQMQNELKalqrKLGITFVFVTHDQE 209
Cdd:PLN03073 336 EMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLL----KWPKTFIVVSHARE 402
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
43-179 |
1.11e-03 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 41.37 E-value: 1.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 43 GEFLTLLGPSGCGKTTVLRLIAGLETvdAGHIMLDNQdITHVPAEN----RYVNTVFQSYALFPHMTVFENVAFG--LRM 116
Cdd:PLN03140 906 GVLTALMGVSGAGKTTLMDVLAGRKT--GGYIEGDIR-ISGFPKKQetfaRISGYCEQNDIHSPQVTVRESLIYSafLRL 982
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16764581 117 QKTPAAEIAPRVTD-ALRMVQLEEFAQR-----KPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALD 179
Cdd:PLN03140 983 PKEVSKEEKMMFVDeVMELVELDNLKDAivglpGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1051
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
32-235 |
1.21e-03 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 41.26 E-value: 1.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 32 VISQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAEN--RYVNTVFQSYALFPHMTVFEN 109
Cdd:PLN03130 1254 VLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDlrKVLGIIPQAPVLFSGTVRFNL 1333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 110 VAFGlrmqKTPAAEIaprvTDALRMVQLEEFAQRKPHQL-----------SGGQQQRVAIARAVVNKPRLLLLDESLSAL 178
Cdd:PLN03130 1334 DPFN----EHNDADL----WESLERAHLKDVIRRNSLGLdaevseagenfSVGQRQLLSLARALLRRSKILVLDEATAAV 1405
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 16764581 179 DYK----LRKQMQNELKAlqrklgITFVFVTHdQEEALTMSDRIVVMRNGVIEQDGTPREI 235
Cdd:PLN03130 1406 DVRtdalIQKTIREEFKS------CTMLIIAH-RLNTIIDCDRILVLDAGRVVEFDTPENL 1459
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
148-226 |
2.61e-03 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 39.77 E-value: 2.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16764581 148 LSGGQQQRVAIARAVVNKPRLLLLDESLSALD-------YKLRKQMQNELKALqrklgitfVFVTHDQEEALTMSDRIVV 220
Cdd:NF040905 405 LSGGNQQKVVLSKWLFTDPDVLILDEPTRGIDvgakyeiYTIINELAAEGKGV--------IVISSELPELLGMCDRIYV 476
|
....*.
gi 16764581 221 MRNGVI 226
Cdd:NF040905 477 MNEGRI 482
|
|
| CMPK |
cd02020 |
Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine ... |
50-82 |
3.36e-03 |
|
Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Pssm-ID: 238978 [Multi-domain] Cd Length: 147 Bit Score: 37.47 E-value: 3.36e-03
10 20 30
....*....|....*....|....*....|....*.
gi 16764581 50 GPSGCGKTTVLRLIA---GLETVDAGHImlDNQDIT 82
Cdd:cd02020 6 GPAGSGKSTVAKLLAkklGLPYLDTGGI--RTEEVG 39
|
|
| PRK04182 |
PRK04182 |
cytidylate kinase; Provisional |
45-74 |
5.19e-03 |
|
cytidylate kinase; Provisional
Pssm-ID: 235244 [Multi-domain] Cd Length: 180 Bit Score: 37.48 E-value: 5.19e-03
10 20 30
....*....|....*....|....*....|...
gi 16764581 45 FLTLLGPSGCGKTTVLRLIA---GLETVDAGHI 74
Cdd:PRK04182 2 IITISGPPGSGKTTVARLLAeklGLKHVSAGEI 34
|
|
| ExeA |
COG3267 |
Type II secretory pathway ATPase component GspA/ExeA/MshM [Intracellular trafficking, ... |
30-74 |
7.67e-03 |
|
Type II secretory pathway ATPase component GspA/ExeA/MshM [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 442498 [Multi-domain] Cd Length: 261 Bit Score: 37.84 E-value: 7.67e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 16764581 30 KEVISQLDLTINNGE-FLTLLGPSGCGKTTVLR-LIAGL-ETVDAGHI 74
Cdd:COG3267 29 REALARLEYALAQGGgFVVLTGEVGTGKTTLLRrLLERLpDDVKVAYI 76
|
|
| |
