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Conserved domains on  [gi|16766795|ref|NP_462410|]
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putative cytoplasmic protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]

Protein Classification

PRK15431 family protein( domain architecture ID 10015113)

PRK15431 family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK15431 PRK15431
[Fe-S]-dependent transcriptional repressor FeoC;
1-78 2.22e-49

[Fe-S]-dependent transcriptional repressor FeoC;


:

Pssm-ID: 185329  Cd Length: 78  Bit Score: 150.02  E-value: 2.22e-49
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 16766795   1 MASLIQVRDLLALRGRMEATQISHTLHAPQPMIDAMLNQLEIMGKAVRIPEEPDGCLSGSCKSCPEGKACLREWWALR 78
Cdd:PRK15431  1 MASLIQVRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKAVRIQEEPDGCLSGSCKSCPEGKACLREWWALR 78
 
Name Accession Description Interval E-value
PRK15431 PRK15431
[Fe-S]-dependent transcriptional repressor FeoC;
1-78 2.22e-49

[Fe-S]-dependent transcriptional repressor FeoC;


Pssm-ID: 185329  Cd Length: 78  Bit Score: 150.02  E-value: 2.22e-49
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 16766795   1 MASLIQVRDLLALRGRMEATQISHTLHAPQPMIDAMLNQLEIMGKAVRIPEEPDGCLSGSCKSCPEGKACLREWWALR 78
Cdd:PRK15431  1 MASLIQVRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKAVRIQEEPDGCLSGSCKSCPEGKACLREWWALR 78
FeoC pfam09012
FeoC like transcriptional regulator; This family contains several transcriptional regulators, ...
 3-70 3.42e-11

FeoC like transcriptional regulator; This family contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependant transcriptional repressor.


Pssm-ID: 462655 [Multi-domain]  Cd Length: 69  Bit Score: 53.09  E-value: 3.42e-11
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 16766795    3 SLIQVRDLLALRGRMEATQISHTLHAPQPMIDAMLNQLEIMGKAVRipEEPDGCLSGSCKSCPEGKAC 70
Cdd:pfam09012  1 ILTELKAYLQERGRASLKELSRHFKASPDAVEGMLEQWIRKGRVEK--LPAGACCGGSCKKCGGAPEV 66
 
Name Accession Description Interval E-value
PRK15431 PRK15431
[Fe-S]-dependent transcriptional repressor FeoC;
1-78 2.22e-49

[Fe-S]-dependent transcriptional repressor FeoC;


Pssm-ID: 185329  Cd Length: 78  Bit Score: 150.02  E-value: 2.22e-49
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 16766795   1 MASLIQVRDLLALRGRMEATQISHTLHAPQPMIDAMLNQLEIMGKAVRIPEEPDGCLSGSCKSCPEGKACLREWWALR 78
Cdd:PRK15431  1 MASLIQVRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKAVRIQEEPDGCLSGSCKSCPEGKACLREWWALR 78
FeoC pfam09012
FeoC like transcriptional regulator; This family contains several transcriptional regulators, ...
 3-70 3.42e-11

FeoC like transcriptional regulator; This family contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependant transcriptional repressor.


Pssm-ID: 462655 [Multi-domain]  Cd Length: 69  Bit Score: 53.09  E-value: 3.42e-11
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 16766795    3 SLIQVRDLLALRGRMEATQISHTLHAPQPMIDAMLNQLEIMGKAVRipEEPDGCLSGSCKSCPEGKAC 70
Cdd:pfam09012  1 ILTELKAYLQERGRASLKELSRHFKASPDAVEGMLEQWIRKGRVEK--LPAGACCGGSCKKCGGAPEV 66
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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