|
Name |
Accession |
Description |
Interval |
E-value |
| RpiB |
COG0698 |
Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]; Ribose 5-phosphate ... |
1-148 |
1.07e-77 |
|
Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]; Ribose 5-phosphate isomerase RpiB is part of the Pathway/BioSystem: Pentose phosphate pathway
Pssm-ID: 440462 Cd Length: 149 Bit Score: 226.89 E-value: 1.07e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16802390 1 MKIAIGCDEMGYELKQTLITRLKEKNIEFTDFGSFEDEKVLYPSIAEKVALEVKNNDYDRGILICGTGIGMAITANKIHG 80
Cdd:COG0698 1 MKIAIGSDHAGFELKEAIKEYLEEKGHEVVDFGTYSEDSVDYPDFAIKVAEAVASGEADRGILICGTGIGMSIAANKVPG 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 16802390 81 IRAAQIHDSYSAERARKSNDAHIMTMGALVIGPSLAVSLLDTWLDSDFSGGRSQAKVDLMEEIDQKNR 148
Cdd:COG0698 81 IRAALCHDPYSARLAREHNDANVLCLGARVIGPELAKEIVDAFLATEFEGGRHQRRVDKISELEKENA 148
|
|
| LacAB_rpiB |
pfam02502 |
Ribose/Galactose Isomerase; This family of proteins contains the sugar isomerase enzymes ... |
3-136 |
6.48e-71 |
|
Ribose/Galactose Isomerase; This family of proteins contains the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB).
Pssm-ID: 460573 Cd Length: 134 Bit Score: 209.17 E-value: 6.48e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16802390 3 IAIGCDEMGYELKQTLITRLKEKNIEFTDFGSFEDEKVLYPSIAEKVALEVKNNDYDRGILICGTGIGMAITANKIHGIR 82
Cdd:pfam02502 1 IAIGSDHAGFELKEEIKEYLEEKGHEVIDFGTYSEESVDYPDYAHKVAEAVASGEADRGILICGTGIGMSIAANKVPGIR 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 16802390 83 AAQIHDSYSAERARKSNDAHIMTMGALVIGPSLAVSLLDTWLDSDFSGGRSQAK 136
Cdd:pfam02502 81 AALCHDPYSAKLAREHNDANVLCLGARVIGPELAKEIVDAFLNTEFEGGRHQRR 134
|
|
| PRK05571 |
PRK05571 |
ribose-5-phosphate isomerase B; Provisional |
1-146 |
3.48e-68 |
|
ribose-5-phosphate isomerase B; Provisional
Pssm-ID: 235509 Cd Length: 148 Bit Score: 202.70 E-value: 3.48e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16802390 1 MKIAIGCDEMGYELKQTLITRLKEKNIEFTDFGSFE-DEKVLYPSIAEKVALEVKNNDYDRGILICGTGIGMAITANKIH 79
Cdd:PRK05571 1 MKIAIGSDHAGFELKEEIIEHLEELGHEVIDLGPDSyDASVDYPDYAKKVAEAVVAGEADRGILICGTGIGMSIAANKVK 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 16802390 80 GIRAAQIHDSYSAERARKSNDAHIMTMGALVIGPSLAVSLLDTWLDSDFSGGRSQAKVDLMEEIDQK 146
Cdd:PRK05571 81 GIRAALCHDTYSAHLAREHNNANVLALGARVIGPELAKDIVDAFLATEFEGGRHQRRIDKIDEYEAQ 147
|
|
| rpiB_lacA_lacB |
TIGR00689 |
sugar-phosphate isomerase, RpiB/LacA/LacB family; Proteins of known function in this family ... |
3-146 |
1.13e-47 |
|
sugar-phosphate isomerase, RpiB/LacA/LacB family; Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to complete the pentose phosphate pathway.
Pssm-ID: 129772 Cd Length: 144 Bit Score: 150.61 E-value: 1.13e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16802390 3 IAIGCDEMGYELKQTLITRLKEKNIEFTDFGSFEDEKVLYPSIAEKVALEVKNNDYDRGILICGTGIGMAITANKIHGIR 82
Cdd:TIGR00689 1 IAIGSDHAGLELKSEIIEHLKQKGHEVIDCGTLYDERVDYPDYAKLVADKVVAGEVSLGILICGTGIGMSIAANKFKGIR 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 16802390 83 AAQIHDSYSAERARKSNDAHIMTMGALVIGPSLAVSLLDTWLDSDFSGGRSQAKVDLMEEIDQK 146
Cdd:TIGR00689 81 AALCVDEYTAALARQHNDANVLCLGSRVVGVELALSIVDAFLTTQFEGGRHQRRIDKIIEYERE 144
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| RpiB |
COG0698 |
Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]; Ribose 5-phosphate ... |
1-148 |
1.07e-77 |
|
Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]; Ribose 5-phosphate isomerase RpiB is part of the Pathway/BioSystem: Pentose phosphate pathway
Pssm-ID: 440462 Cd Length: 149 Bit Score: 226.89 E-value: 1.07e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16802390 1 MKIAIGCDEMGYELKQTLITRLKEKNIEFTDFGSFEDEKVLYPSIAEKVALEVKNNDYDRGILICGTGIGMAITANKIHG 80
Cdd:COG0698 1 MKIAIGSDHAGFELKEAIKEYLEEKGHEVVDFGTYSEDSVDYPDFAIKVAEAVASGEADRGILICGTGIGMSIAANKVPG 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 16802390 81 IRAAQIHDSYSAERARKSNDAHIMTMGALVIGPSLAVSLLDTWLDSDFSGGRSQAKVDLMEEIDQKNR 148
Cdd:COG0698 81 IRAALCHDPYSARLAREHNDANVLCLGARVIGPELAKEIVDAFLATEFEGGRHQRRVDKISELEKENA 148
|
|
| LacAB_rpiB |
pfam02502 |
Ribose/Galactose Isomerase; This family of proteins contains the sugar isomerase enzymes ... |
3-136 |
6.48e-71 |
|
Ribose/Galactose Isomerase; This family of proteins contains the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB).
Pssm-ID: 460573 Cd Length: 134 Bit Score: 209.17 E-value: 6.48e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16802390 3 IAIGCDEMGYELKQTLITRLKEKNIEFTDFGSFEDEKVLYPSIAEKVALEVKNNDYDRGILICGTGIGMAITANKIHGIR 82
Cdd:pfam02502 1 IAIGSDHAGFELKEEIKEYLEEKGHEVIDFGTYSEESVDYPDYAHKVAEAVASGEADRGILICGTGIGMSIAANKVPGIR 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 16802390 83 AAQIHDSYSAERARKSNDAHIMTMGALVIGPSLAVSLLDTWLDSDFSGGRSQAK 136
Cdd:pfam02502 81 AALCHDPYSAKLAREHNDANVLCLGARVIGPELAKEIVDAFLNTEFEGGRHQRR 134
|
|
| PRK05571 |
PRK05571 |
ribose-5-phosphate isomerase B; Provisional |
1-146 |
3.48e-68 |
|
ribose-5-phosphate isomerase B; Provisional
Pssm-ID: 235509 Cd Length: 148 Bit Score: 202.70 E-value: 3.48e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16802390 1 MKIAIGCDEMGYELKQTLITRLKEKNIEFTDFGSFE-DEKVLYPSIAEKVALEVKNNDYDRGILICGTGIGMAITANKIH 79
Cdd:PRK05571 1 MKIAIGSDHAGFELKEEIIEHLEELGHEVIDLGPDSyDASVDYPDYAKKVAEAVVAGEADRGILICGTGIGMSIAANKVK 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 16802390 80 GIRAAQIHDSYSAERARKSNDAHIMTMGALVIGPSLAVSLLDTWLDSDFSGGRSQAKVDLMEEIDQK 146
Cdd:PRK05571 81 GIRAALCHDTYSAHLAREHNNANVLALGARVIGPELAKDIVDAFLATEFEGGRHQRRIDKIDEYEAQ 147
|
|
| PTZ00215 |
PTZ00215 |
ribose 5-phosphate isomerase; Provisional |
1-147 |
1.70e-48 |
|
ribose 5-phosphate isomerase; Provisional
Pssm-ID: 185516 Cd Length: 151 Bit Score: 153.25 E-value: 1.70e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16802390 1 MKIAIGCDEMGYELKQTLITRLKEKN--IEFTDFGSFEDEKVLYPSIAEKVALEVKNNDYDRGILICGTGIGMAITANKI 78
Cdd:PTZ00215 3 KKVAIGSDHAGFDLKNEIIDYIKNKGkeYKIEDMGTYTAESVDYPDFAEKVCEEVLKGEADTGILVCGSGIGISIAANKV 82
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16802390 79 HGIRAAQIHDSYSAERARKSNDAHIMTMGALVIGPSLAVSLLDTWLDSDFSGGRSQAKVDLMEEIDQKN 147
Cdd:PTZ00215 83 KGIRCALCHDHYTARMSRQHNNANVLAFGGRTTGIEVAKEIIDTFLSTPFEGGRHTERIDKISAIEEEN 151
|
|
| rpiB_lacA_lacB |
TIGR00689 |
sugar-phosphate isomerase, RpiB/LacA/LacB family; Proteins of known function in this family ... |
3-146 |
1.13e-47 |
|
sugar-phosphate isomerase, RpiB/LacA/LacB family; Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to complete the pentose phosphate pathway.
Pssm-ID: 129772 Cd Length: 144 Bit Score: 150.61 E-value: 1.13e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16802390 3 IAIGCDEMGYELKQTLITRLKEKNIEFTDFGSFEDEKVLYPSIAEKVALEVKNNDYDRGILICGTGIGMAITANKIHGIR 82
Cdd:TIGR00689 1 IAIGSDHAGLELKSEIIEHLKQKGHEVIDCGTLYDERVDYPDYAKLVADKVVAGEVSLGILICGTGIGMSIAANKFKGIR 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 16802390 83 AAQIHDSYSAERARKSNDAHIMTMGALVIGPSLAVSLLDTWLDSDFSGGRSQAKVDLMEEIDQK 146
Cdd:TIGR00689 81 AALCVDEYTAALARQHNDANVLCLGSRVVGVELALSIVDAFLTTQFEGGRHQRRIDKIIEYERE 144
|
|
| rpiB |
TIGR01120 |
ribose 5-phosphate isomerase B; Involved in the non-oxidative branch of the pentose phospate ... |
2-143 |
2.51e-42 |
|
ribose 5-phosphate isomerase B; Involved in the non-oxidative branch of the pentose phospate pathway. [Energy metabolism, Pentose phosphate pathway]
Pssm-ID: 130190 Cd Length: 143 Bit Score: 137.35 E-value: 2.51e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16802390 2 KIAIGCDEMGYELKQTLITRLKEKNIEFTDFGSFEDEKVLYPSIAEKVALEVKNNDYDRGILICGTGIGMAITANKIHGI 81
Cdd:TIGR01120 1 KIAIGSDHAGFILKEEIKAFLVERGVKVIDKGTWSSERTDYPHYAKQVALAVAGGEVDGGILICGTGIGMSIAANKFAGI 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 16802390 82 RAAQIHDSYSAERARKSNDAHIMTMGALVIGPSLAVSLLDTWLDSDFSGGRSQAKVDLMEEI 143
Cdd:TIGR01120 81 RAALCSEPYMAQMSRLHNDANVLCLGERVVGLELAKSIVDAWLGTQFEGGRHQQRVEAITAI 142
|
|
| PRK08622 |
PRK08622 |
galactose-6-phosphate isomerase subunit LacB; Reviewed |
1-128 |
1.51e-28 |
|
galactose-6-phosphate isomerase subunit LacB; Reviewed
Pssm-ID: 181506 Cd Length: 171 Bit Score: 102.80 E-value: 1.51e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16802390 1 MKIAIGCDEMGYELKQTLITRLKEKNIEFTDFGSFEDEKVLYPSIAEKVALEVKNNDYDRGILICGTGIGMAITANKIHG 80
Cdd:PRK08622 1 MKIAIGCDHIVTDEKMAVSDYLKSKGHEVIDVGTYDFTRTHYPIFGKKVGEAVASGEADLGVCICGTGVGISNAVNKVPG 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 16802390 81 IRAAQIHDSYSAERARKSNDAHIMTMGALVIGPSLAVSLLDTWLDSDF 128
Cdd:PRK08622 81 IRSALVRDMTSALYAKEELNANVIGFGGKITGELLMCDIIDAFINAEY 128
|
|
| RPI_actino |
TIGR02133 |
ribose 5-phosphate isomerase; This family is a member of the RpiB/LacA/LacB subfamily ... |
1-142 |
1.62e-28 |
|
ribose 5-phosphate isomerase; This family is a member of the RpiB/LacA/LacB subfamily (TIGR00689) but lies outside the RpiB equivalog (TIGR01120) which is also a member of that subfamily. Ribose 5-phosphate isomerase is an essential enzyme of the pentose phosphate pathway; a pathway that appears to be present in the actinobacteria. The only candidates for ribose 5-phosphate isomerase in the Actinobacteria are members of this family.
Pssm-ID: 273989 Cd Length: 148 Bit Score: 102.15 E-value: 1.62e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16802390 1 MKIAIGCDEMGYELKQTLITRLKEKNIEFTDFGSFE-DEKVLYPSIAEKVALEVKNNDYDRGILICGTGIGMAITANKIH 79
Cdd:TIGR02133 1 MRVVLGHDHAGFEYKEALWLDLAAHEPEVCDVGVYDaDDDDDYPCFCIAAAEAVARDAADLGIVIGGSGNGEAIAANKVK 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 16802390 80 GIRAAQIHDSYSAERARKSNDAHIMTMGALVIGPSLAVSLLDTWLDSDFSG-GRSQAKVDLMEE 142
Cdd:TIGR02133 81 GARAALAWDTASAGRARLHNNANVVGAGMRMHGLEEAFRLVFEFLGFEFDArSRHARRIDSISE 144
|
|
| PRK08621 |
PRK08621 |
galactose-6-phosphate isomerase subunit LacA; Reviewed |
1-141 |
5.79e-28 |
|
galactose-6-phosphate isomerase subunit LacA; Reviewed
Pssm-ID: 181505 Cd Length: 142 Bit Score: 100.56 E-value: 5.79e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16802390 1 MKIAIGCDEMGYELKQTLITRLKEKNIEFTDFGSFEDEKVLYPSIAekVALEVKNNDYDRGILICGTGIGMAITANKIHG 80
Cdd:PRK08621 1 MAIIIGADKAGFELKEVVKDYLEDNKYEVVDVTEEGAEDFVDSTLA--VAKEVNKSEDNLGIVIDAYGAGSFMVATKIKG 78
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 16802390 81 IRAAQIHDSYSAERARKSNDAHIMTMGALVIGPSLAVSLLDTWLDSDFSGGRSQAKVDLME 141
Cdd:PRK08621 79 MVAAEVSDERSAYMTRGHNNARMITMGSEIVGDGLAKNIIKGFVEGKYDGGRHQIRVDMLN 139
|
|
| PRK12615 |
PRK12615 |
galactose-6-phosphate isomerase subunit LacB; Reviewed |
1-128 |
2.42e-22 |
|
galactose-6-phosphate isomerase subunit LacB; Reviewed
Pssm-ID: 171610 Cd Length: 171 Bit Score: 87.00 E-value: 2.42e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16802390 1 MKIAIGCDEMGYELKQTLITRLKEKNIEFTDFGSFEDEKVLYPSIAEKVALEVKNNDYDRGILICGTGIGMAITANKIHG 80
Cdd:PRK12615 1 MKIAIGCDHIVTNEKMAVSDFLKSKGYDVIDCGTYDHTRTHYPIFGKKVGEAVVNGQADLGVCICGTGVGINNAVNKVPG 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 16802390 81 IRAAQIHDSYSAERARKSNDAHIMTMGALVIGPSLAVSLLDTWLDSDF 128
Cdd:PRK12615 81 IRSALVRDMTTALYAKEELNANVIGFGGKITGELLMCDIIDAFIKAEY 128
|
|
| PRK12613 |
PRK12613 |
galactose-6-phosphate isomerase subunit LacA; Provisional |
1-143 |
2.28e-18 |
|
galactose-6-phosphate isomerase subunit LacA; Provisional
Pssm-ID: 171609 Cd Length: 141 Bit Score: 76.12 E-value: 2.28e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16802390 1 MKIAIGCDEMGYELKQTLITRLKEKNIEFTDFGSFEDEKVlypSIAEKVALEVKNNDYDRGILICGTGIGMAITANKIHG 80
Cdd:PRK12613 1 MAIILGADAHGNALKELIKSFLQEEGYDIIDVTDINSDFI---DNTLAVAKAVNEAEGRLGIMVDAYGAGPFMVATKLKG 77
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 16802390 81 IRAAQIHDSYSAERARKSNDAHIMTMGALVIGPSLAVSLLDTWLDSDFSGGRSQAKVDLMEEI 143
Cdd:PRK12613 78 MVAAEVSDERSAYMTRGHNNARMITMGAEIVGPELAKNIAKGFVTGPYDGGRHQIRVDMLNKM 140
|
|
|