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Conserved domains on  [gi|17534127|ref|NP_495879|]
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Uncharacterized protein CELE_F46C5.1 [Caenorhabditis elegans]

Protein Classification

DUF5380 domain-containing protein( domain architecture ID 13879718)

DUF5380 domain-containing protein similar to Caenorhabditis elegans protein F46C5.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF5380 pfam17351
Family of unknown function (DUF5380); This is a family of unknown function found in Rhabditida.
 37-121 2.05e-53

Family of unknown function (DUF5380); This is a family of unknown function found in Rhabditida.


:

Pssm-ID: 375145  Cd Length: 85  Bit Score: 162.33  E-value: 2.05e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17534127    37 LEILFAKIVKKQNESKQHRLINFISRAMPGGVDAPIASMAEYETFKSDKSANFLSDGAGHVVFRQYRRARLSDILHNVNR 116
Cdd:pfam17351   1 LAALYDKLMKKQTEIKNQRLIQFISKAVPYGVDAPNPKIAEYETFKSDKSANFLRDGAGHVVFRQFRRLRLSDVLQESKS 80


                  ....*
gi 17534127   117 RAGGV 121
Cdd:pfam17351  81 ARLGC 85
 
Name Accession Description Interval E-value
DUF5380 pfam17351
Family of unknown function (DUF5380); This is a family of unknown function found in Rhabditida.
 37-121 2.05e-53

Family of unknown function (DUF5380); This is a family of unknown function found in Rhabditida.


Pssm-ID: 375145  Cd Length: 85  Bit Score: 162.33  E-value: 2.05e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17534127    37 LEILFAKIVKKQNESKQHRLINFISRAMPGGVDAPIASMAEYETFKSDKSANFLSDGAGHVVFRQYRRARLSDILHNVNR 116
Cdd:pfam17351   1 LAALYDKLMKKQTEIKNQRLIQFISKAVPYGVDAPNPKIAEYETFKSDKSANFLRDGAGHVVFRQFRRLRLSDVLQESKS 80


                  ....*
gi 17534127   117 RAGGV 121
Cdd:pfam17351  81 ARLGC 85
 
Name Accession Description Interval E-value
DUF5380 pfam17351
Family of unknown function (DUF5380); This is a family of unknown function found in Rhabditida.
 37-121 2.05e-53

Family of unknown function (DUF5380); This is a family of unknown function found in Rhabditida.


Pssm-ID: 375145  Cd Length: 85  Bit Score: 162.33  E-value: 2.05e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17534127    37 LEILFAKIVKKQNESKQHRLINFISRAMPGGVDAPIASMAEYETFKSDKSANFLSDGAGHVVFRQYRRARLSDILHNVNR 116
Cdd:pfam17351   1 LAALYDKLMKKQTEIKNQRLIQFISKAVPYGVDAPNPKIAEYETFKSDKSANFLRDGAGHVVFRQFRRLRLSDVLQESKS 80


                  ....*
gi 17534127   117 RAGGV 121
Cdd:pfam17351  81 ARLGC 85
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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