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Conserved domains on  [gi|17553554|ref|NP_497138|]
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Large ribosomal subunit protein mL40 [Caenorhabditis elegans]

Protein Classification

MRP-L28 domain-containing protein( domain architecture ID 10561261)

MRP-L28 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
MRP-L28 pfam09812
Mitochondrial ribosomal protein L28; Members of this family are components of the ...
 28-187 6.39e-50

Mitochondrial ribosomal protein L28; Members of this family are components of the mitochondrial large ribosomal subunit. Mature mitochondrial ribosomes consist of a small (37S) and a large (54S) subunit. The 37S subunit contains at least 33 different proteins and 1 molecule of RNA (15S). The 54S subunit contains at least 45 different proteins and 1 molecule of RNA (21S).


:

Pssm-ID: 430845  Cd Length: 157  Bit Score: 158.49  E-value: 6.39e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17553554    28 SSVFMKRQKKIDPevakQRETRRRKRLEKDIRQMQKHSKKPKPVDELTLDVKSAKNIGERRRPRTELTLEQIDERAIALK 107
Cdd:pfam09812   2 RAEPLKKKKKVDP----RREQRARKRLKKRIRKRTKSSGELKPIEDFIVPQKSADSASRRQRKLLELSFEDLERRALLLK 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17553554   108 DYTRSRLALQQEDDAWIRGAIESQRKALNELKMLKLELYEAAVQPAAKDLPLIVQGPSLTPPIRNYEAPDGDYIDTTRNW 187
Cdd:pfam09812  78 AWALYRQQEKLMRRQQIRQQYEAQQEALEELKLVSPELYEAAIQPDPGLFPLEIRGPTYTPPIKNYEAPEGRYNDINKVW 157
 
Name Accession Description Interval E-value
MRP-L28 pfam09812
Mitochondrial ribosomal protein L28; Members of this family are components of the ...
 28-187 6.39e-50

Mitochondrial ribosomal protein L28; Members of this family are components of the mitochondrial large ribosomal subunit. Mature mitochondrial ribosomes consist of a small (37S) and a large (54S) subunit. The 37S subunit contains at least 33 different proteins and 1 molecule of RNA (15S). The 54S subunit contains at least 45 different proteins and 1 molecule of RNA (21S).


Pssm-ID: 430845  Cd Length: 157  Bit Score: 158.49  E-value: 6.39e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17553554    28 SSVFMKRQKKIDPevakQRETRRRKRLEKDIRQMQKHSKKPKPVDELTLDVKSAKNIGERRRPRTELTLEQIDERAIALK 107
Cdd:pfam09812   2 RAEPLKKKKKVDP----RREQRARKRLKKRIRKRTKSSGELKPIEDFIVPQKSADSASRRQRKLLELSFEDLERRALLLK 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17553554   108 DYTRSRLALQQEDDAWIRGAIESQRKALNELKMLKLELYEAAVQPAAKDLPLIVQGPSLTPPIRNYEAPDGDYIDTTRNW 187
Cdd:pfam09812  78 AWALYRQQEKLMRRQQIRQQYEAQQEALEELKLVSPELYEAAIQPDPGLFPLEIRGPTYTPPIKNYEAPEGRYNDINKVW 157
 
Name Accession Description Interval E-value
MRP-L28 pfam09812
Mitochondrial ribosomal protein L28; Members of this family are components of the ...
 28-187 6.39e-50

Mitochondrial ribosomal protein L28; Members of this family are components of the mitochondrial large ribosomal subunit. Mature mitochondrial ribosomes consist of a small (37S) and a large (54S) subunit. The 37S subunit contains at least 33 different proteins and 1 molecule of RNA (15S). The 54S subunit contains at least 45 different proteins and 1 molecule of RNA (21S).


Pssm-ID: 430845  Cd Length: 157  Bit Score: 158.49  E-value: 6.39e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17553554    28 SSVFMKRQKKIDPevakQRETRRRKRLEKDIRQMQKHSKKPKPVDELTLDVKSAKNIGERRRPRTELTLEQIDERAIALK 107
Cdd:pfam09812   2 RAEPLKKKKKVDP----RREQRARKRLKKRIRKRTKSSGELKPIEDFIVPQKSADSASRRQRKLLELSFEDLERRALLLK 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17553554   108 DYTRSRLALQQEDDAWIRGAIESQRKALNELKMLKLELYEAAVQPAAKDLPLIVQGPSLTPPIRNYEAPDGDYIDTTRNW 187
Cdd:pfam09812  78 AWALYRQQEKLMRRQQIRQQYEAQQEALEELKLVSPELYEAAIQPDPGLFPLEIRGPTYTPPIKNYEAPEGRYNDINKVW 157
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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