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Conserved domains on  [gi|392894090|ref|NP_497334|]
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Excretory canal abnormal protein 6 [Caenorhabditis elegans]

Protein Classification

FH2 domain-containing protein( domain architecture ID 10490182)

FH2 domain-containing protein similar to formin homology proteins that control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarization

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
FH2 pfam02181
Formin Homology 2 Domain;
140-487 1.42e-98

Formin Homology 2 Domain;


:

Pssm-ID: 396655  Cd Length: 372  Bit Score: 311.51  E-value: 1.42e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894090  140 VQWSKINASVVQDdSVWGKLAKASN-VDIDFDLLDNFFGIESLAVSGA-AEVVKKSTRKDAHVELLTAKRSQNVAIMLKQ 217
Cdd:pfam02181  14 LHWDKVRPSQDRG-TVWDKLDDESFeLDGDLSELEELFSAKAKTKKNKkSEDKSSSKKKPKEVSLLDPKRAQNIAILLRK 92
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894090  218 FK-NIDELIDDVSQNKP-VAEIDALQNLFGMLPQSEEEEALRRYTGDISLLSPPSSFFYRLVQIQFYRLRIETQIFLSDF 295
Cdd:pfam02181  93 LKlPPEEIIQAILEGDEdALDLELLENLLKMAPTKEELKKLKEYKGDPSELGRAEQFLLELSKIPRLEARLRALLFKSTF 172
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894090  296 SRLMRELAPNVEILIRTSQEILTSPTLPRLLLIFVNMGNYLNGNNSQGNAFGFTLNSLWKLIDLKGNKQEFSLLHLLVTC 375
Cdd:pfam02181 173 EEEIEELKPSLEALEAASEELRNSRKFKKLLELILALGNYMNDGTRRGQAKGFKLSSLLKLSDTKSTDNKTTLLHYLVKI 252
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894090  376 ---EPDLVAHLQEELSTLKDASQISFDEIKISLKTLRDGRCKLEKQLETCSGA-----SFTQFLELIKIDCKFELDEFGA 447
Cdd:pfam02181 253 ireKFPEVLDFSSELSHVKKAAKVNLEQLEKDVKQLERGLKKLERELELSALDehpddKFREVLKEFLKSAEEKLDKLES 332
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 392894090  448 NYDKLTELQYQLADYFCENRNTFQLDECLKIFNFLMNRLQ 487
Cdd:pfam02181 333 LLREALELFKELVEYFGEDPKETSPEEFFKILRDFLKEFK 372
PHA03247 super family cl33720
large tegument protein UL36; Provisional
584-834 7.49e-05

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 46.86  E-value: 7.49e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894090  584 PTDSTSSKENESVKPAKTSTNYEMCNDLESYITSLTR-KRASHLPKAP----PKEEPKLPEVLPEKSKIALKIEkiPEKI 658
Cdd:PHA03247 2627 PPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRpRRARRLGRAAqassPPQRPRRRAARPTVGSLTSLAD--PPPP 2704
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894090  659 DKPPLPQAAPIIPKLPQksikAPSTVTTRSKVPPPTAAAAVRIVSVTTTTTPTKTAELRKPGARSPKTTVAtvpkvtvvp 738
Cdd:PHA03247 2705 PPTPEPAPHALVSATPL----PPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAP--------- 2771
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894090  739 vsrvPVAPSTPLSRRMSAPVVrkptmtaekkreitMKPSVSTSARPSLINTSSHPM-VRSPLPKMSVLEKPKPLRITRPT 817
Cdd:PHA03247 2772 ----PAAPAAGPPRRLTRPAV--------------ASLSESRESLPSPWDPADPPAaVLAPAAALPPAASPAGPLPPPTS 2833
                         250
                  ....*....|....*..
gi 392894090  818 VIPQSPTVTSSARPSGL 834
Cdd:PHA03247 2834 AQPTAPPPPPGPPPPSL 2850
 
Name Accession Description Interval E-value
FH2 pfam02181
Formin Homology 2 Domain;
140-487 1.42e-98

Formin Homology 2 Domain;


Pssm-ID: 396655  Cd Length: 372  Bit Score: 311.51  E-value: 1.42e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894090  140 VQWSKINASVVQDdSVWGKLAKASN-VDIDFDLLDNFFGIESLAVSGA-AEVVKKSTRKDAHVELLTAKRSQNVAIMLKQ 217
Cdd:pfam02181  14 LHWDKVRPSQDRG-TVWDKLDDESFeLDGDLSELEELFSAKAKTKKNKkSEDKSSSKKKPKEVSLLDPKRAQNIAILLRK 92
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894090  218 FK-NIDELIDDVSQNKP-VAEIDALQNLFGMLPQSEEEEALRRYTGDISLLSPPSSFFYRLVQIQFYRLRIETQIFLSDF 295
Cdd:pfam02181  93 LKlPPEEIIQAILEGDEdALDLELLENLLKMAPTKEELKKLKEYKGDPSELGRAEQFLLELSKIPRLEARLRALLFKSTF 172
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894090  296 SRLMRELAPNVEILIRTSQEILTSPTLPRLLLIFVNMGNYLNGNNSQGNAFGFTLNSLWKLIDLKGNKQEFSLLHLLVTC 375
Cdd:pfam02181 173 EEEIEELKPSLEALEAASEELRNSRKFKKLLELILALGNYMNDGTRRGQAKGFKLSSLLKLSDTKSTDNKTTLLHYLVKI 252
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894090  376 ---EPDLVAHLQEELSTLKDASQISFDEIKISLKTLRDGRCKLEKQLETCSGA-----SFTQFLELIKIDCKFELDEFGA 447
Cdd:pfam02181 253 ireKFPEVLDFSSELSHVKKAAKVNLEQLEKDVKQLERGLKKLERELELSALDehpddKFREVLKEFLKSAEEKLDKLES 332
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 392894090  448 NYDKLTELQYQLADYFCENRNTFQLDECLKIFNFLMNRLQ 487
Cdd:pfam02181 333 LLREALELFKELVEYFGEDPKETSPEEFFKILRDFLKEFK 372
FH2 smart00498
Formin Homology 2 Domain; FH proteins control rearrangements of the actin cytoskeleton, ...
142-496 4.21e-35

Formin Homology 2 Domain; FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.


Pssm-ID: 214697 [Multi-domain]  Cd Length: 392  Bit Score: 138.25  E-value: 4.21e-35
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894090   142 WSKINASVVQDdSVWGKLAKASNVDidFDLLDNFFGIESLAVSGAAEV----VKKSTRKDAHVELLTAKRSQNVAIMLKQ 217
Cdd:smart00498  15 WDKLNPSDLSG-TVWDKIDEESEGD--LDELEELFSAKEKTKSASKDVsekkSILKKKASQEFKILDPKRSQNLAILLRK 91
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894090   218 FK-NIDELIDDV-SQNKPVAEIDALQNLFGMLPQSEEEEALRRY-TGDISLLSPPSSFFYRLVQIQFYRLRIETQIFLSD 294
Cdd:smart00498  92 LHmSYEEIKEAIlEGDEDVLSVDLLEQLLKYAPTKEELKKLREYkEEDPEELARAEQFLLLISNIPYLEERLNALLFKAN 171
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894090   295 FSRLMRELAPNVEILIRTSQEILTSPTLPRLLLIFVNMGNYLNGNNSQGNAFGFTLNSLWKLIDLKGNKQEFSLLHLLV- 373
Cdd:smart00498 172 FEEEVEDLKPQIEKVEAACEELRESKKFRKLLELILAIGNYMNGGSRRGQAYGFKLSSLLKLSDVKSADNKTTLLHFLVk 251
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894090   374 TCEpdlvahlQEELSTLKDASQISFDEIKISLKTLRDGRCKLEKQLETCSgasftqflelikidckfeldefganydKLT 453
Cdd:smart00498 252 IIR-------KKYLGGLSDPENLDDKFIEVMKPFLKAAKEKYDKLQKDLS---------------------------DLK 297
                          330       340       350       360
                   ....*....|....*....|....*....|....*....|...
gi 392894090   454 ELQYQLADYFCENRNTFQLDECLKIFNFLMNRLQQTLKEHVTR 496
Cdd:smart00498 298 TRFEKLVEYYGEDPKDTSPEEFFKDFNEFLKEFSKAAEENIKK 340
PHA03247 PHA03247
large tegument protein UL36; Provisional
584-834 7.49e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 46.86  E-value: 7.49e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894090  584 PTDSTSSKENESVKPAKTSTNYEMCNDLESYITSLTR-KRASHLPKAP----PKEEPKLPEVLPEKSKIALKIEkiPEKI 658
Cdd:PHA03247 2627 PPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRpRRARRLGRAAqassPPQRPRRRAARPTVGSLTSLAD--PPPP 2704
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894090  659 DKPPLPQAAPIIPKLPQksikAPSTVTTRSKVPPPTAAAAVRIVSVTTTTTPTKTAELRKPGARSPKTTVAtvpkvtvvp 738
Cdd:PHA03247 2705 PPTPEPAPHALVSATPL----PPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAP--------- 2771
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894090  739 vsrvPVAPSTPLSRRMSAPVVrkptmtaekkreitMKPSVSTSARPSLINTSSHPM-VRSPLPKMSVLEKPKPLRITRPT 817
Cdd:PHA03247 2772 ----PAAPAAGPPRRLTRPAV--------------ASLSESRESLPSPWDPADPPAaVLAPAAALPPAASPAGPLPPPTS 2833
                         250
                  ....*....|....*..
gi 392894090  818 VIPQSPTVTSSARPSGL 834
Cdd:PHA03247 2834 AQPTAPPPPPGPPPPSL 2850
 
Name Accession Description Interval E-value
FH2 pfam02181
Formin Homology 2 Domain;
140-487 1.42e-98

Formin Homology 2 Domain;


Pssm-ID: 396655  Cd Length: 372  Bit Score: 311.51  E-value: 1.42e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894090  140 VQWSKINASVVQDdSVWGKLAKASN-VDIDFDLLDNFFGIESLAVSGA-AEVVKKSTRKDAHVELLTAKRSQNVAIMLKQ 217
Cdd:pfam02181  14 LHWDKVRPSQDRG-TVWDKLDDESFeLDGDLSELEELFSAKAKTKKNKkSEDKSSSKKKPKEVSLLDPKRAQNIAILLRK 92
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894090  218 FK-NIDELIDDVSQNKP-VAEIDALQNLFGMLPQSEEEEALRRYTGDISLLSPPSSFFYRLVQIQFYRLRIETQIFLSDF 295
Cdd:pfam02181  93 LKlPPEEIIQAILEGDEdALDLELLENLLKMAPTKEELKKLKEYKGDPSELGRAEQFLLELSKIPRLEARLRALLFKSTF 172
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894090  296 SRLMRELAPNVEILIRTSQEILTSPTLPRLLLIFVNMGNYLNGNNSQGNAFGFTLNSLWKLIDLKGNKQEFSLLHLLVTC 375
Cdd:pfam02181 173 EEEIEELKPSLEALEAASEELRNSRKFKKLLELILALGNYMNDGTRRGQAKGFKLSSLLKLSDTKSTDNKTTLLHYLVKI 252
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894090  376 ---EPDLVAHLQEELSTLKDASQISFDEIKISLKTLRDGRCKLEKQLETCSGA-----SFTQFLELIKIDCKFELDEFGA 447
Cdd:pfam02181 253 ireKFPEVLDFSSELSHVKKAAKVNLEQLEKDVKQLERGLKKLERELELSALDehpddKFREVLKEFLKSAEEKLDKLES 332
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 392894090  448 NYDKLTELQYQLADYFCENRNTFQLDECLKIFNFLMNRLQ 487
Cdd:pfam02181 333 LLREALELFKELVEYFGEDPKETSPEEFFKILRDFLKEFK 372
FH2 smart00498
Formin Homology 2 Domain; FH proteins control rearrangements of the actin cytoskeleton, ...
142-496 4.21e-35

Formin Homology 2 Domain; FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.


Pssm-ID: 214697 [Multi-domain]  Cd Length: 392  Bit Score: 138.25  E-value: 4.21e-35
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894090   142 WSKINASVVQDdSVWGKLAKASNVDidFDLLDNFFGIESLAVSGAAEV----VKKSTRKDAHVELLTAKRSQNVAIMLKQ 217
Cdd:smart00498  15 WDKLNPSDLSG-TVWDKIDEESEGD--LDELEELFSAKEKTKSASKDVsekkSILKKKASQEFKILDPKRSQNLAILLRK 91
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894090   218 FK-NIDELIDDV-SQNKPVAEIDALQNLFGMLPQSEEEEALRRY-TGDISLLSPPSSFFYRLVQIQFYRLRIETQIFLSD 294
Cdd:smart00498  92 LHmSYEEIKEAIlEGDEDVLSVDLLEQLLKYAPTKEELKKLREYkEEDPEELARAEQFLLLISNIPYLEERLNALLFKAN 171
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894090   295 FSRLMRELAPNVEILIRTSQEILTSPTLPRLLLIFVNMGNYLNGNNSQGNAFGFTLNSLWKLIDLKGNKQEFSLLHLLV- 373
Cdd:smart00498 172 FEEEVEDLKPQIEKVEAACEELRESKKFRKLLELILAIGNYMNGGSRRGQAYGFKLSSLLKLSDVKSADNKTTLLHFLVk 251
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894090   374 TCEpdlvahlQEELSTLKDASQISFDEIKISLKTLRDGRCKLEKQLETCSgasftqflelikidckfeldefganydKLT 453
Cdd:smart00498 252 IIR-------KKYLGGLSDPENLDDKFIEVMKPFLKAAKEKYDKLQKDLS---------------------------DLK 297
                          330       340       350       360
                   ....*....|....*....|....*....|....*....|...
gi 392894090   454 ELQYQLADYFCENRNTFQLDECLKIFNFLMNRLQQTLKEHVTR 496
Cdd:smart00498 298 TRFEKLVEYYGEDPKDTSPEEFFKDFNEFLKEFSKAAEENIKK 340
PHA03247 PHA03247
large tegument protein UL36; Provisional
584-834 7.49e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 46.86  E-value: 7.49e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894090  584 PTDSTSSKENESVKPAKTSTNYEMCNDLESYITSLTR-KRASHLPKAP----PKEEPKLPEVLPEKSKIALKIEkiPEKI 658
Cdd:PHA03247 2627 PPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRpRRARRLGRAAqassPPQRPRRRAARPTVGSLTSLAD--PPPP 2704
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894090  659 DKPPLPQAAPIIPKLPQksikAPSTVTTRSKVPPPTAAAAVRIVSVTTTTTPTKTAELRKPGARSPKTTVAtvpkvtvvp 738
Cdd:PHA03247 2705 PPTPEPAPHALVSATPL----PPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAP--------- 2771
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894090  739 vsrvPVAPSTPLSRRMSAPVVrkptmtaekkreitMKPSVSTSARPSLINTSSHPM-VRSPLPKMSVLEKPKPLRITRPT 817
Cdd:PHA03247 2772 ----PAAPAAGPPRRLTRPAV--------------ASLSESRESLPSPWDPADPPAaVLAPAAALPPAASPAGPLPPPTS 2833
                         250
                  ....*....|....*..
gi 392894090  818 VIPQSPTVTSSARPSGL 834
Cdd:PHA03247 2834 AQPTAPPPPPGPPPPSL 2850
PLN03209 PLN03209
translocon at the inner envelope of chloroplast subunit 62; Provisional
651-837 2.36e-04

translocon at the inner envelope of chloroplast subunit 62; Provisional


Pssm-ID: 178748 [Multi-domain]  Cd Length: 576  Bit Score: 44.53  E-value: 2.36e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894090 651 IEKIPEKIDKPPLPQAAPIIPKLPQKSIKAPSTVTTRSKVPPPTAAAAVRIVSvttttTPTKTAELRKPGARSPKTTVAT 730
Cdd:PLN03209 320 LAKIPSQRVPPKESDAADGPKPVPTKPVTPEAPSPPIEEEPPQPKAVVPRPLS-----PYTAYEDLKPPTSPIPTPPSSS 394
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894090 731 VPKVTVVPVSRVPVAPSTPLSRRMSAPVVRKPTMTAEKKREITM---------------KPSVSTSARPSLINTSSHPMV 795
Cdd:PLN03209 395 PASSKSVDAVAKPAEPDVVPSPGSASNVPEVEPAQVEAKKTRPLspyaryedlkpptspSPTAPTGVSPSVSSTSSVPAV 474
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 392894090 796 RSPLPKMSVLE-------KPKPLRITRPTVIPQSPTVTSSARPSGLRQP 837
Cdd:PLN03209 475 PDTAPATAATDaaapppaNMRPLSPYAVYDDLKPPTSPSPAAPVGKVAP 523
PHA03247 PHA03247
large tegument protein UL36; Provisional
619-840 1.96e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 42.23  E-value: 1.96e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894090  619 TRKRASHLPKAPPKEE-PKLPEVLPEKSKIALKIEKIPEKIDKPPLPQ-AAPIIPKLPQKSIKAPSTVTTRSKVPPPTAA 696
Cdd:PHA03247 2755 ARPARPPTTAGPPAPApPAAPAAGPPRRLTRPAVASLSESRESLPSPWdPADPPAAVLAPAAALPPAASPAGPLPPPTSA 2834
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894090  697 AAVRIVSVTTTTTPTKTAE---------LRKPGARSPKTTvatvpkvtvvpvsrvPVAPSTPLSRRMSAPVVRKPTMTAE 767
Cdd:PHA03247 2835 QPTAPPPPPGPPPPSLPLGgsvapggdvRRRPPSRSPAAK---------------PAAPARPPVRRLARPAVSRSTESFA 2899
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 392894090  768 KKREITMKPSVSTSARPslintsshpmvrsPLPKMSVLEKPKPLRITRPTVIPQSPTV-TSSARPSGLRQPAKP 840
Cdd:PHA03247 2900 LPPDQPERPPQPQAPPP-------------PQPQPQPPPPPQPQPPPPPPPRPQPPLApTTDPAGAGEPSGAVP 2960
PRK10819 PRK10819
transport protein TonB; Provisional
625-704 5.66e-03

transport protein TonB; Provisional


Pssm-ID: 236768 [Multi-domain]  Cd Length: 246  Bit Score: 39.28  E-value: 5.66e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894090 625 HLPKAPPKEEPKlPEVLPEKskialKIEKIPEKIDKPPLPQ-AAPIIPKLPQKSikAPSTVTTRSKVPPPTAAAAVRIVS 703
Cdd:PRK10819  93 PKPEPKPKPKPK-PKPKPVK-----KVEEQPKREVKPVEPRpASPFENTAPARP--TSSTATAAASKPVTSVSSGPRALS 164

                 .
gi 392894090 704 V 704
Cdd:PRK10819 165 R 165
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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