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Conserved domains on  [gi|17540716|ref|NP_499990|]
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Receptor expression-enhancing protein [Caenorhabditis elegans]

Protein Classification

HVA22/TB2/DP1 family protein( domain architecture ID 10504231)

HVA22/TB2/DP1 family protein such as receptor expression enhancing proteins (REEPs), which are membrane shaping adapter proteins that modulate specific G protein-coupled receptor trafficking by affecting ER cargo capacity

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TB2_DP1_HVA22 pfam03134
TB2/DP1, HVA22 family; This family includes members from a wide variety of eukaryotes. It ...
 112-188 2.96e-32

TB2/DP1, HVA22 family; This family includes members from a wide variety of eukaryotes. It includes the TB2/DP1 (deleted in polyposis) protein, which in humans is deleted in severe forms of familial adenomatous polyposis, an autosomal dominant oncological inherited disease. The family also includes the plant protein of known similarity to TB2/DP1, the HVA22 abscisic acid-induced protein, which is thought to be a regulatory protein.


:

Pssm-ID: 460820  Cd Length: 77  Bit Score: 111.44  E-value: 2.96e-32
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 17540716   112 PTYASVKAIRSPGGDDDTVWLIYWTCFAVLYLVDFFSEAILSWFPFYYIAKACFLVYLYLPQTQGSVMFYETIVDPL 188
Cdd:pfam03134   1 PAYASYKALESPDKDDDTQWLTYWVVFGFFTLVESFADFLLSWIPFYYEFKLLFLLWLVLPQTQGATYIYEKFLRPF 77
 
Name Accession Description Interval E-value
TB2_DP1_HVA22 pfam03134
TB2/DP1, HVA22 family; This family includes members from a wide variety of eukaryotes. It ...
 112-188 2.96e-32

TB2/DP1, HVA22 family; This family includes members from a wide variety of eukaryotes. It includes the TB2/DP1 (deleted in polyposis) protein, which in humans is deleted in severe forms of familial adenomatous polyposis, an autosomal dominant oncological inherited disease. The family also includes the plant protein of known similarity to TB2/DP1, the HVA22 abscisic acid-induced protein, which is thought to be a regulatory protein.


Pssm-ID: 460820  Cd Length: 77  Bit Score: 111.44  E-value: 2.96e-32
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 17540716   112 PTYASVKAIRSPGGDDDTVWLIYWTCFAVLYLVDFFSEAILSWFPFYYIAKACFLVYLYLPQTQGSVMFYETIVDPL 188
Cdd:pfam03134   1 PAYASYKALESPDKDDDTQWLTYWVVFGFFTLVESFADFLLSWIPFYYEFKLLFLLWLVLPQTQGATYIYEKFLRPF 77
YOP1 COG5052
Protein involved in membrane traffic [Intracellular trafficking and secretion];
89-189 7.13e-20

Protein involved in membrane traffic [Intracellular trafficking and secretion];


Pssm-ID: 227385  Cd Length: 186  Bit Score: 82.93  E-value: 7.13e-20
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17540716  89 LIAFFLVFGSVARLLCNLIGFGYPTYASVKAIRSPGGDDDTVWLIYWTCFAVLYLVDFFSEAILSWFPFYYIAKACFLVY 168
Cdd:COG5052  48 LLNLFSTVLGFGLILTNVAGFSLPAQLSLVAFYTLNFMDDTQLLTYWMVFGFLSAIEKYSGAILSKVPFYWTLKNVFLLW 127

                        90       100
                ....*....|....*....|.
gi 17540716 169 LYLPQTQGSVMFYETIVDPLV 189
Cdd:COG5052 128 LLLPRTEGARIIYDDIIAPDV 148
 
Name Accession Description Interval E-value
TB2_DP1_HVA22 pfam03134
TB2/DP1, HVA22 family; This family includes members from a wide variety of eukaryotes. It ...
 112-188 2.96e-32

TB2/DP1, HVA22 family; This family includes members from a wide variety of eukaryotes. It includes the TB2/DP1 (deleted in polyposis) protein, which in humans is deleted in severe forms of familial adenomatous polyposis, an autosomal dominant oncological inherited disease. The family also includes the plant protein of known similarity to TB2/DP1, the HVA22 abscisic acid-induced protein, which is thought to be a regulatory protein.


Pssm-ID: 460820  Cd Length: 77  Bit Score: 111.44  E-value: 2.96e-32
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 17540716   112 PTYASVKAIRSPGGDDDTVWLIYWTCFAVLYLVDFFSEAILSWFPFYYIAKACFLVYLYLPQTQGSVMFYETIVDPL 188
Cdd:pfam03134   1 PAYASYKALESPDKDDDTQWLTYWVVFGFFTLVESFADFLLSWIPFYYEFKLLFLLWLVLPQTQGATYIYEKFLRPF 77
YOP1 COG5052
Protein involved in membrane traffic [Intracellular trafficking and secretion];
89-189 7.13e-20

Protein involved in membrane traffic [Intracellular trafficking and secretion];


Pssm-ID: 227385  Cd Length: 186  Bit Score: 82.93  E-value: 7.13e-20
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17540716  89 LIAFFLVFGSVARLLCNLIGFGYPTYASVKAIRSPGGDDDTVWLIYWTCFAVLYLVDFFSEAILSWFPFYYIAKACFLVY 168
Cdd:COG5052  48 LLNLFSTVLGFGLILTNVAGFSLPAQLSLVAFYTLNFMDDTQLLTYWMVFGFLSAIEKYSGAILSKVPFYWTLKNVFLLW 127

                        90       100
                ....*....|....*....|.
gi 17540716 169 LYLPQTQGSVMFYETIVDPLV 189
Cdd:COG5052 128 LLLPRTEGARIIYDDIIAPDV 148
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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