|
Name |
Accession |
Description |
Interval |
E-value |
| PLN03077 |
PLN03077 |
Protein ECB2; Provisional |
185-968 |
3.31e-175 |
|
Protein ECB2; Provisional
Pssm-ID: 215561 [Multi-domain] Cd Length: 857 Bit Score: 531.73 E-value: 3.31e-175
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18394615 185 PDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFS 264
Cdd:PLN03077 84 VDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYA 163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18394615 265 DNGFSEESFLLLGEMMEengdGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCIT 344
Cdd:PLN03077 164 KAGYFDEALCLYHRMLW----AGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVV 239
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18394615 345 NAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLagGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQ 424
Cdd:PLN03077 240 SARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMR--ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKT 317
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18394615 425 EFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLS 504
Cdd:PLN03077 318 GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLS 397
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18394615 505 ACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGV 584
Cdd:PLN03077 398 ACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIF 477
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18394615 585 FRQMVLYgIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNgLKEKSTA 664
Cdd:PLN03077 478 FRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN-SHEKDVV 555
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18394615 665 SWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDML 744
Cdd:PLN03077 556 SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLL 635
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18394615 745 GRAGQLDKALRVVaEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVR 824
Cdd:PLN03077 636 GRAGKLTEAYNFI-NKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVR 714
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18394615 825 QRMNEMSLRKDAGCSWIELNRKVFSFVVGERFldgFEEIKSLWSILEMKISKMGYRPDTMSVQHDLSEEE--KIEQLRGH 902
Cdd:PLN03077 715 KTMRENGLTVDPGCSWVEVKGKVHAFLTDDES---HPQIKEINTVLEGFYEKMKASGLAGSESSSMDEIEvsKDDIFCGH 791
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 18394615 903 SEKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNGVCSCGD 968
Cdd:PLN03077 792 SERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857
|
|
| DYW_deaminase |
pfam14432 |
DYW family of nucleic acid deaminases; This is the DYW domain found in nucleic acid deaminases ... |
878-970 |
3.35e-45 |
|
DYW family of nucleic acid deaminases; This is the DYW domain found in nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members containing this domain are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. This domain contains a characteriztic zinc-binding motif (CXXC, HXE) which has been shown to bind zinc ions. This domain is often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems.
Pssm-ID: 464172 [Multi-domain] Cd Length: 93 Bit Score: 157.58 E-value: 3.35e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18394615 878 GYRPDTMSVQHDLSEEEKIEQLRGHSEKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFH 957
Cdd:pfam14432 1 GYVPDLRFVLHDVDDEEKKQLLCGHSEKLALAYGLLTTPDGATIRITKNLRVCGDCHTAFKYISKIRGREIVVRDASRFH 80
|
90
....*....|...
gi 18394615 958 HFKNGVCSCGDYW 970
Cdd:pfam14432 81 HFKNGLCSCGDFW 93
|
|
| PPR |
TIGR00756 |
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ... |
665-698 |
5.41e-05 |
|
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Pssm-ID: 273253 [Multi-domain] Cd Length: 35 Bit Score: 40.90 E-value: 5.41e-05
10 20 30
....*....|....*....|....*....|....
gi 18394615 665 SWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDD 698
Cdd:TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
154-198 |
2.22e-04 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 39.65 E-value: 2.22e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 18394615 154 WNAVISSYSRNELYDEVLETFIEMIStTDLLPDHFTYPCVIKACA 198
Cdd:pfam13041 6 YNTLINGYCKKGKVEEAFKLFNEMKK-RGVKPNVYTYTILINGLC 49
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PLN03077 |
PLN03077 |
Protein ECB2; Provisional |
185-968 |
3.31e-175 |
|
Protein ECB2; Provisional
Pssm-ID: 215561 [Multi-domain] Cd Length: 857 Bit Score: 531.73 E-value: 3.31e-175
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18394615 185 PDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFS 264
Cdd:PLN03077 84 VDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYA 163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18394615 265 DNGFSEESFLLLGEMMEengdGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCIT 344
Cdd:PLN03077 164 KAGYFDEALCLYHRMLW----AGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVV 239
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18394615 345 NAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLagGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQ 424
Cdd:PLN03077 240 SARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMR--ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKT 317
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18394615 425 EFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLS 504
Cdd:PLN03077 318 GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLS 397
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18394615 505 ACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGV 584
Cdd:PLN03077 398 ACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIF 477
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18394615 585 FRQMVLYgIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNgLKEKSTA 664
Cdd:PLN03077 478 FRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN-SHEKDVV 555
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18394615 665 SWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDML 744
Cdd:PLN03077 556 SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLL 635
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18394615 745 GRAGQLDKALRVVaEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVR 824
Cdd:PLN03077 636 GRAGKLTEAYNFI-NKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVR 714
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18394615 825 QRMNEMSLRKDAGCSWIELNRKVFSFVVGERFldgFEEIKSLWSILEMKISKMGYRPDTMSVQHDLSEEE--KIEQLRGH 902
Cdd:PLN03077 715 KTMRENGLTVDPGCSWVEVKGKVHAFLTDDES---HPQIKEINTVLEGFYEKMKASGLAGSESSSMDEIEvsKDDIFCGH 791
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 18394615 903 SEKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNGVCSCGD 968
Cdd:PLN03077 792 SERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857
|
|
| PLN03081 |
PLN03081 |
pentatricopeptide (PPR) repeat-containing protein; Provisional |
434-970 |
9.03e-133 |
|
pentatricopeptide (PPR) repeat-containing protein; Provisional
Pssm-ID: 215563 [Multi-domain] Cd Length: 697 Bit Score: 415.81 E-value: 9.03e-133
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18394615 434 NAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLR 513
Cdd:PLN03081 162 NRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18394615 514 LGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGI 593
Cdd:PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18394615 594 QLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGY 673
Cdd:PLN03081 322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGY 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18394615 674 GIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKA 753
Cdd:PLN03081 402 GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18394615 754 LRVVaEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLR 833
Cdd:PLN03081 482 YAMI-RRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18394615 834 KDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRPDTMSVQHDLSEEEKIEQLRGHSEKLALTYGLI 913
Cdd:PLN03081 561 MHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLI 640
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*..
gi 18394615 914 KTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNGVCSCGDYW 970
Cdd:PLN03081 641 NTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697
|
|
| DYW_deaminase |
pfam14432 |
DYW family of nucleic acid deaminases; This is the DYW domain found in nucleic acid deaminases ... |
878-970 |
3.35e-45 |
|
DYW family of nucleic acid deaminases; This is the DYW domain found in nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members containing this domain are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. This domain contains a characteriztic zinc-binding motif (CXXC, HXE) which has been shown to bind zinc ions. This domain is often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems.
Pssm-ID: 464172 [Multi-domain] Cd Length: 93 Bit Score: 157.58 E-value: 3.35e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18394615 878 GYRPDTMSVQHDLSEEEKIEQLRGHSEKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFH 957
Cdd:pfam14432 1 GYVPDLRFVLHDVDDEEKKQLLCGHSEKLALAYGLLTTPDGATIRITKNLRVCGDCHTAFKYISKIRGREIVVRDASRFH 80
|
90
....*....|...
gi 18394615 958 HFKNGVCSCGDYW 970
Cdd:pfam14432 81 HFKNGLCSCGDFW 93
|
|
| PLN03081 |
PLN03081 |
pentatricopeptide (PPR) repeat-containing protein; Provisional |
90-405 |
3.83e-43 |
|
pentatricopeptide (PPR) repeat-containing protein; Provisional
Pssm-ID: 215563 [Multi-domain] Cd Length: 697 Bit Score: 168.13 E-value: 3.83e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18394615 90 LLQASGKRKDIEMGRKIHQLVSgSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDE 169
Cdd:PLN03081 129 LVEACIALKSIRCVKAVYWHVE-SSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYRE 207
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18394615 170 VLETFIEMISTTDLLPDHfTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMP 249
Cdd:PLN03081 208 AFALFREMWEDGSDAEPR-TFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP 286
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18394615 250 ERNLVSWNSMIRVFSDNGFSEESFLLLGEMMeengDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVL 329
Cdd:PLN03081 287 EKTTVAWNSMLAGYALHGYSEEALCLYYEMR----DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVA 362
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 18394615 330 NNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAggEDVKADEVTILNAVPVC 405
Cdd:PLN03081 363 NTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIA--EGVAPNHVTFLAVLSAC 436
|
|
| E_motif |
pfam20431 |
E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) ... |
780-842 |
5.37e-19 |
|
E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) proteins which contain a DYW deaminase domain. The DYW domain is required for RNA editing, a process that deaminates specific cytidines to uridines. This motif, together with the E+ motif, precedes the DYW domain and, although their role is not clear, they are essential in the RNA editing reaction. The E/E+ motifs may contain two degenerate PPR motifs that could be involved in RNA or protein binding.
Pssm-ID: 466580 [Multi-domain] Cd Length: 63 Bit Score: 81.82 E-value: 5.37e-19
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 18394615 780 HQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIE 842
Cdd:pfam20431 1 YSNVELAEKAANILLELEKTNDGNYTLLSNIYAYAGRWKDVERIRKLMKSSGIKKRPGCSWIE 63
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
661-708 |
9.22e-09 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 51.98 E-value: 9.22e-09
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 18394615 661 KSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTAC 708
Cdd:pfam13041 1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
351-754 |
8.13e-08 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 56.42 E-value: 8.13e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18394615 351 KMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRqmLAGGEDVKADEVTILNAVPVC------------FHESFLPSLK-EL 417
Cdd:PLN03218 430 KLIRNPTLSTFNMLMSVCASSQDIDGALRVLR--LVQEAGLKADCKLYTTLISTCaksgkvdamfevFHEMVNAGVEaNV 507
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18394615 418 HCYSlkqefvynelvanAFVASYAKCGSLSYAQRVFHGIRSKTVNS----WNALIGGHAQSNDPRLSLDAHLQMKISG-- 491
Cdd:PLN03218 508 HTFG-------------ALIDGCARAGQVAKAFGAYGIMRSKNVKPdrvvFNALISACGQSGAVDRAFDVLAEMKAEThp 574
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18394615 492 LLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSL----VSWNT 567
Cdd:PLN03218 575 IDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVkpdeVFFSA 654
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18394615 568 VITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSllpslrlgreaHAYALKHLLEddafiacslidMYAKNGS 647
Cdd:PLN03218 655 LVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACS-----------NAKNWKKALE-----------LYEDIKS 712
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18394615 648 ItqsskvfnglKEKSTAS-WNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKS 726
Cdd:PLN03218 713 I----------KLRPTVStMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKE 782
|
410 420
....*....|....*....|....*...
gi 18394615 727 SfGLKPNLKHYACVIDMLGRagQLDKAL 754
Cdd:PLN03218 783 D-GIKPNLVMCRCITGLCLR--RFEKAC 807
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
230-519 |
2.98e-06 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 51.42 E-value: 2.98e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18394615 230 SFYG---THGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLgEMMEENGdgaFMPDVATLVTVLPVCARER 306
Cdd:PLN03218 411 KFFKackKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVL-RLVQEAG---LKADCKLYTTLISTCAKSG 486
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18394615 307 EIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNV----VSWNTMVGGFSAEGDTHGTFDVLR 382
Cdd:PLN03218 487 KVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVkpdrVVFNALISACGQSGAVDRAFDVLA 566
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18394615 383 QMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELhcYSLKQEfvYN----ELVANAFVASYAKCGSLSYAQRVFHGIRS 458
Cdd:PLN03218 567 EMKAETHPIDPDHITVGALMKACANAGQVDRAKEV--YQMIHE--YNikgtPEVYTIAVNSCSQKGDWDFALSIYDDMKK 642
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 18394615 459 KTVNS----WNALI--GGHAQSNDPRLSLdahLQ-MKISGLLPDSFTVCSLLSACSKLKSLRLGKEVH 519
Cdd:PLN03218 643 KGVKPdevfFSALVdvAGHAGDLDKAFEI---LQdARKQGIKLGTVSYSSLMGACSNAKNWKKALELY 707
|
|
| PPR |
pfam01535 |
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ... |
665-691 |
1.18e-05 |
|
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.
Pssm-ID: 366695 [Multi-domain] Cd Length: 31 Bit Score: 42.84 E-value: 1.18e-05
10 20
....*....|....*....|....*..
gi 18394615 665 SWNAMIMGYGIHGLAKEAIKLFEEMQR 691
Cdd:pfam01535 2 TYNSLISGYCKNGKLEEALELFKEMKE 28
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
459-508 |
4.87e-05 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 41.58 E-value: 4.87e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 18394615 459 KTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSK 508
Cdd:pfam13041 1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
|
|
| PPR |
pfam01535 |
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ... |
563-593 |
5.23e-05 |
|
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.
Pssm-ID: 366695 [Multi-domain] Cd Length: 31 Bit Score: 40.91 E-value: 5.23e-05
10 20 30
....*....|....*....|....*....|.
gi 18394615 563 VSWNTVITGYLQNGFPDRALGVFRQMVLYGI 593
Cdd:pfam01535 1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
|
|
| PPR |
TIGR00756 |
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ... |
665-698 |
5.41e-05 |
|
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Pssm-ID: 273253 [Multi-domain] Cd Length: 35 Bit Score: 40.90 E-value: 5.41e-05
10 20 30
....*....|....*....|....*....|....
gi 18394615 665 SWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDD 698
Cdd:TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
154-198 |
2.22e-04 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 39.65 E-value: 2.22e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 18394615 154 WNAVISSYSRNELYDEVLETFIEMIStTDLLPDHFTYPCVIKACA 198
Cdd:pfam13041 6 YNTLINGYCKKGKVEEAFKLFNEMKK-RGVKPNVYTYTILINGLC 49
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
146-279 |
7.91e-04 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 43.33 E-value: 7.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18394615 146 LRSKNL----FQWNAVISSYSRNELYDEVLETFIEMIS-TTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVE 220
Cdd:PLN03218 533 MRSKNVkpdrVVFNALISACGQSGAVDRAFDVLAEMKAeTHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKG 612
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 18394615 221 DVFVGNALVSFYGTHGFVTDALQLFDIMPERNL----VSWNSMIRVFSDNGFSEESFLLLGEM 279
Cdd:PLN03218 613 TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVkpdeVFFSALVDVAGHAGDLDKAFEILQDA 675
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
560-594 |
1.14e-03 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 37.73 E-value: 1.14e-03
10 20 30
....*....|....*....|....*....|....*
gi 18394615 560 KSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQ 594
Cdd:pfam13041 1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVK 35
|
|
| PPR |
TIGR00756 |
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ... |
563-595 |
1.15e-03 |
|
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Pssm-ID: 273253 [Multi-domain] Cd Length: 35 Bit Score: 37.43 E-value: 1.15e-03
10 20 30
....*....|....*....|....*....|...
gi 18394615 563 VSWNTVITGYLQNGFPDRALGVFRQMVLYGIQL 595
Cdd:TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEP 33
|
|
| PPR_1 |
pfam12854 |
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ... |
728-762 |
1.55e-03 |
|
PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.
Pssm-ID: 403914 [Multi-domain] Cd Length: 34 Bit Score: 36.94 E-value: 1.55e-03
10 20 30
....*....|....*....|....*....|....*
gi 18394615 728 FGLKPNLKHYACVIDMLGRAGQLDKALRVVaEEMS 762
Cdd:pfam12854 1 KGLKPDVVTYNTLINGLCRAGRVDEAFELL-DEME 34
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
613-877 |
1.74e-03 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 42.17 E-value: 1.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18394615 613 LRLGREAHayalkhlLEDDAFIACSLIDMYAKNGSITQSSKVF----NGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEE 688
Cdd:PLN03218 460 LRLVQEAG-------LKADCKLYTTLISTCAKSGKVDAMFEVFhemvNAGVEANVHTFGALIDGCARAGQVAKAFGAYGI 532
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18394615 689 MQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKS-SFGLKPNLKHYACVIDMLGRAGQLDKALRVVaeEMSEEADV 767
Cdd:PLN03218 533 MRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAeTHPIDPDHITVGALMKACANAGQVDRAKEVY--QMIHEYNI 610
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18394615 768 ----GIWKSLLSSCRIHQNLEMGEKVAAKLFElEPEKPENyVLLSNLYAGLGKWEDVRKVrqrmneMSLRKDAGCSWIEL 843
Cdd:PLN03218 611 kgtpEVYTIAVNSCSQKGDWDFALSIYDDMKK-KGVKPDE-VFFSALVDVAGHAGDLDKA------FEILQDARKQGIKL 682
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 18394615 844 NRKVFSFVVG--------ERFLDGFEEIKSlwSILEMKISKM 877
Cdd:PLN03218 683 GTVSYSSLMGacsnaknwKKALELYEDIKS--IKLRPTVSTM 722
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
356-397 |
2.15e-03 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 36.96 E-value: 2.15e-03
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 18394615 356 KNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGedVKADEVT 397
Cdd:pfam13041 1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRG--VKPNVYT 40
|
|
| PPR |
pfam01535 |
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ... |
254-283 |
2.25e-03 |
|
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.
Pssm-ID: 366695 [Multi-domain] Cd Length: 31 Bit Score: 36.29 E-value: 2.25e-03
10 20 30
....*....|....*....|....*....|
gi 18394615 254 VSWNSMIRVFSDNGFSEESFLLLGEMMEEN 283
Cdd:pfam01535 1 VTYNSLISGYCKNGKLEEALELFKEMKEKG 30
|
|
| PPR_3 |
pfam13812 |
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ... |
684-745 |
2.46e-03 |
|
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.
Pssm-ID: 316342 [Multi-domain] Cd Length: 63 Bit Score: 37.34 E-value: 2.46e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 18394615 684 KLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSfGLKPNLKHYACVIDMLG 745
Cdd:pfam13812 1 SILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKK-GIKPTLDTYNAILGVIG 61
|
|
| PLN03077 |
PLN03077 |
Protein ECB2; Provisional |
660-774 |
3.72e-03 |
|
Protein ECB2; Provisional
Pssm-ID: 215561 [Multi-domain] Cd Length: 857 Bit Score: 41.37 E-value: 3.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18394615 660 EKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLR---YLDQMKSSFGLKPNlkh 736
Cdd:PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRvcsRALSSHPSLGVRLG--- 124
|
90 100 110
....*....|....*....|....*....|....*...
gi 18394615 737 yACVIDMLGRAGQLDKALRVVAeEMSEEaDVGIWKSLL 774
Cdd:PLN03077 125 -NAMLSMFVRFGELVHAWYVFG-KMPER-DLFSWNVLV 159
|
|
| PPR |
pfam01535 |
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ... |
154-179 |
3.79e-03 |
|
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.
Pssm-ID: 366695 [Multi-domain] Cd Length: 31 Bit Score: 35.90 E-value: 3.79e-03
10 20
....*....|....*....|....*.
gi 18394615 154 WNAVISSYSRNELYDEVLETFIEMIS 179
Cdd:pfam01535 3 YNSLISGYCKNGKLEEALELFKEMKE 28
|
|
| |
