NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|18396748|ref|NP_564305|]
View 

dormancy-associated protein-like 1 [Arabidopsis thaliana]

Protein Classification

Auxin_repressed domain-containing protein( domain architecture ID 10527755)

Auxin_repressed domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Auxin_repressed pfam05564
Dormancy/auxin associated protein; This family contains several plant dormancy-associated and ...
 7-122 2.83e-67

Dormancy/auxin associated protein; This family contains several plant dormancy-associated and auxin-repressed proteins the function of which are poorly understood.


:

Pssm-ID: 398933  Cd Length: 117  Bit Score: 198.19  E-value: 2.83e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18396748     7 LWDDVVAGPQPDRGLGRLRKITTQPINIRDIGEGSSSKVVMHRSLTMPA-AVSPGTPTTPTTPTTPRKDNVWRSVFNPGS 85
Cdd:pfam05564   1 LWDDVVAGPQPDRGLGKLRKITTKPLDIKTLGEGESSGSKYQRSLSMPAsPGTPGTPTTPTTPTTARKDNVWRSVFHPGS 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 18396748    86 NLATRAIGSNIFDKPTHPNSPSVYDWLYSGDSRSQHR 122
Cdd:pfam05564  81 NLATKRIGANLFDKPTHPNSPTVYDWLYSGETRSKHR 117
 
Name Accession Description Interval E-value
Auxin_repressed pfam05564
Dormancy/auxin associated protein; This family contains several plant dormancy-associated and ...
 7-122 2.83e-67

Dormancy/auxin associated protein; This family contains several plant dormancy-associated and auxin-repressed proteins the function of which are poorly understood.


Pssm-ID: 398933  Cd Length: 117  Bit Score: 198.19  E-value: 2.83e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18396748     7 LWDDVVAGPQPDRGLGRLRKITTQPINIRDIGEGSSSKVVMHRSLTMPA-AVSPGTPTTPTTPTTPRKDNVWRSVFNPGS 85
Cdd:pfam05564   1 LWDDVVAGPQPDRGLGKLRKITTKPLDIKTLGEGESSGSKYQRSLSMPAsPGTPGTPTTPTTPTTARKDNVWRSVFHPGS 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 18396748    86 NLATRAIGSNIFDKPTHPNSPSVYDWLYSGDSRSQHR 122
Cdd:pfam05564  81 NLATKRIGANLFDKPTHPNSPTVYDWLYSGETRSKHR 117
 
Name Accession Description Interval E-value
Auxin_repressed pfam05564
Dormancy/auxin associated protein; This family contains several plant dormancy-associated and ...
 7-122 2.83e-67

Dormancy/auxin associated protein; This family contains several plant dormancy-associated and auxin-repressed proteins the function of which are poorly understood.


Pssm-ID: 398933  Cd Length: 117  Bit Score: 198.19  E-value: 2.83e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18396748     7 LWDDVVAGPQPDRGLGRLRKITTQPINIRDIGEGSSSKVVMHRSLTMPA-AVSPGTPTTPTTPTTPRKDNVWRSVFNPGS 85
Cdd:pfam05564   1 LWDDVVAGPQPDRGLGKLRKITTKPLDIKTLGEGESSGSKYQRSLSMPAsPGTPGTPTTPTTPTTARKDNVWRSVFHPGS 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 18396748    86 NLATRAIGSNIFDKPTHPNSPSVYDWLYSGDSRSQHR 122
Cdd:pfam05564  81 NLATKRIGANLFDKPTHPNSPTVYDWLYSGETRSKHR 117
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH