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Conserved domains on  [gi|18424670|ref|NP_568965|]
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transcription termination factor [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ANAPC15 super family cl21102
Anaphase-promoting complex subunit 15; This is a component of the anaphase promoting complex ...
 8-71 1.69e-12

Anaphase-promoting complex subunit 15; This is a component of the anaphase promoting complex/cyclosome.


The actual alignment was detected with superfamily member pfam15243:

Pssm-ID: 464583  Cd Length: 89  Bit Score: 57.66  E-value: 1.69e-12
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 18424670    8 MTQFPSSTKTIPASYLLPLQwpQPQNEEILLAMEEAEFEEKCNEIRKMSPALPVIGKPVVNNEQ 71
Cdd:pfam15243  1 MPLFPSLLPRVTDPLWFNVD--KPCDEEAELAQLEQEHQEWLNSIRKKDSDLVPIGKPASEPEE 62
 
Name Accession Description Interval E-value
ANAPC15 pfam15243
Anaphase-promoting complex subunit 15; This is a component of the anaphase promoting complex ...
 8-71 1.69e-12

Anaphase-promoting complex subunit 15; This is a component of the anaphase promoting complex/cyclosome.


Pssm-ID: 464583  Cd Length: 89  Bit Score: 57.66  E-value: 1.69e-12
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 18424670    8 MTQFPSSTKTIPASYLLPLQwpQPQNEEILLAMEEAEFEEKCNEIRKMSPALPVIGKPVVNNEQ 71
Cdd:pfam15243  1 MPLFPSLLPRVTDPLWFNVD--KPCDEEAELAQLEQEHQEWLNSIRKKDSDLVPIGKPASEPEE 62
 
Name Accession Description Interval E-value
ANAPC15 pfam15243
Anaphase-promoting complex subunit 15; This is a component of the anaphase promoting complex ...
 8-71 1.69e-12

Anaphase-promoting complex subunit 15; This is a component of the anaphase promoting complex/cyclosome.


Pssm-ID: 464583  Cd Length: 89  Bit Score: 57.66  E-value: 1.69e-12
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 18424670    8 MTQFPSSTKTIPASYLLPLQwpQPQNEEILLAMEEAEFEEKCNEIRKMSPALPVIGKPVVNNEQ 71
Cdd:pfam15243  1 MPLFPSLLPRVTDPLWFNVD--KPCDEEAELAQLEQEHQEWLNSIRKKDSDLVPIGKPASEPEE 62
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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