|
Name |
Accession |
Description |
Interval |
E-value |
| TBC |
smart00164 |
Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs; Widespread domain present in Gyp6 and ... |
113-320 |
8.34e-72 |
|
Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs; Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Pssm-ID: 214540 [Multi-domain] Cd Length: 216 Bit Score: 233.74 E-value: 8.34e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 113 VRRGIPHHFRAIVWQQLSGASD----GDKKQYAEYIKATSACEKV----IRRDIARTYPEVEFFKEKDGPGQEALFNVIK 184
Cdd:smart00164 1 VRKGVPPSLRGVVWKLLLNAQPmdtsADKDLYSRLLKETAPDDKSivhqIEKDLRRTFPEHSFFQDKEGPGQESLRRVLK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 185 AYSLHDREVGYCQGSGFIVGLLLMQMP-EEEAFAVLVQIMQQHRMRhMFKPSMSELGLCMYQLENLVQEQIPDMHIHFQQ 263
Cdd:smart00164 81 AYALYNPEVGYCQGMNFLAAPLLLVMEdEEDAFWCLVKLMERYGPN-FYLPDMSGLQLDLLQLDRLVKEYDPDLYKHLKD 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 62484206 264 QGFQTTMYASSWFLTLYTTTLNVNLSCRIMDVFLSEGMEFIFKVALALLLTGKDTLL 320
Cdd:smart00164 160 LGITPSLYALRWFLTLFARELPLEIVLRIWDVLFAEGSDFLFRVALALLKLHRDVLL 216
|
|
| RabGAP-TBC |
pfam00566 |
Rab-GTPase-TBC domain; Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are ... |
154-320 |
3.10e-53 |
|
Rab-GTPase-TBC domain; Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, implies that these domains are GTPase activator proteins of Rab-like small GTPases.
Pssm-ID: 459855 Cd Length: 178 Bit Score: 182.07 E-value: 3.10e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 154 IRRDIARTYPEVEFFKekDGPGQEALFNVIKAYSLHDREVGYCQGSGFIVGLLLMQ-MPEEEAFAVLVQIMQQHRMRHMF 232
Cdd:pfam00566 12 IEKDVPRTFPHSFFFD--NGPGQNSLRRILKAYSIYNPDVGYCQGMNFIAAPLLLVyLDEEDAFWCFVSLLENYLLRDFY 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 233 KPSMSELGLCMYQLENLVQEQIPDMHIHFQQQGFQTTMYASSWFLTLYTTTLNVNLSCRIMDVFLSEGMEF-IFKVALAL 311
Cdd:pfam00566 90 TPDFPGLKRDLYVFEELLKKKLPKLYKHLKELGLDPDLFASQWFLTLFAREFPLSTVLRIWDYFFLEGEKFvLFRVALAI 169
|
....*....
gi 62484206 312 LLTGKDTLL 320
Cdd:pfam00566 170 LKRFREELL 178
|
|
| COG5210 |
COG5210 |
GTPase-activating protein [General function prediction only]; |
109-328 |
2.89e-42 |
|
GTPase-activating protein [General function prediction only];
Pssm-ID: 227535 [Multi-domain] Cd Length: 496 Bit Score: 161.12 E-value: 2.89e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 109 VSELVRRGIPHHFRAIVWQQLSGASDGDKKQ----------YAEYIKATSACEKVIRRDIARTYPEVEFFKEKDGPGQEA 178
Cdd:COG5210 205 LRELIRKGIPNELRGDVWEFLLGIGFDLDKNpglyerllnlHREAKIPTQEIISQIEKDLSRTFPDNSLFQTEISIRAEN 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 179 LFNVIKAYSLHDREVGYCQGSGFIVGLLLMQMPEEE-AFAVLVQIMQQHRMRHMFKPSMSELGLCMYQLENLVQEQIPDM 257
Cdd:COG5210 285 LRRVLKAYSLYNPEVGYVQGMNFLAAPLLLVLESEEqAFWCLVKLLKNYGLPGYFLKNLSGLHRDLKVLDDLVEELDPEL 364
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 62484206 258 HIHFQQQGFQTTMYASSWFLTLYTTTLNVNLSCRIMDVFLSEGMEFIFKVALALLLTGKDTLLCLDMEAML 328
Cdd:COG5210 365 YEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGSSMLFQLALAILKLLRDKLLKLDSDELL 435
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
358-761 |
3.53e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 70.35 E-value: 3.53e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 358 KRMKKMEKE------YQDLKKKEQEEMAELRRLRRENC------------LLKQRNELLEAESAELADRLVRGQVSRAEE 419
Cdd:COG1196 200 RQLEPLERQaekaerYRELKEELKELEAELLLLKLRELeaeleeleaeleELEAELEELEAELAELEAELEELRLELEEL 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 420 EETSYAIQTELMQLRRSYLEVSHQLENANEEVRGLSLRLQENNVSIDSNNSRQSSIDELcmKEEALKQRDEmvscLLEEL 499
Cdd:COG1196 280 ELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEE--LEELEEELEE----AEEEL 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 500 VKVRQGLAESEDQIRNLKAKVEELEEDKKTLREttpdnsvahlqdeliasklREAEASLSLKDLKQRVQELSSQWQRQLA 579
Cdd:COG1196 354 EEAEAELAEAEEALLEAEAELAEAEEELEELAE-------------------ELLEALRAAAELAAQLEELEEAEEALLE 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 580 ENQRSESERTTNAvdstpkklltnffdsskssEHTQKLEEELMTTRIREMETLTELKELRLKVMELETQVQVSTNQLRRQ 659
Cdd:COG1196 415 RLERLEEELEELE-------------------EALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALL 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 660 DEEHKKLKEELEMAVTREKDMSNKAREQQHRYSDLESRMKdelmnvKIKFTEQSQTVAELKQEISRLETKNSEMLAEGEL 739
Cdd:COG1196 476 EAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALL------LAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQ 549
|
410 420
....*....|....*....|..
gi 62484206 740 RANLDDSDKVRDLQDRLADMKA 761
Cdd:COG1196 550 NIVVEDDEVAAAAIEYLKAAKA 571
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
358-671 |
4.36e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.54 E-value: 4.36e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 358 KRMKKMEKEYQDLKkkeqeemAELRRLRREncLLKQRNELLEAESAELADRLVRGQVSRAEEEETSYAIQTELMQLRRSY 437
Cdd:TIGR02168 206 ERQAEKAERYKELK-------AELRELELA--LLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEV 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 438 LEVSHQLENANEEVRGLSLRLQENNVSIDS-NNSRQSSIDELCMKEEALKQRDEMVSCLLEELVKVRQGLAESEDQIRNL 516
Cdd:TIGR02168 277 SELEEEIEELQKELYALANEISRLEQQKQIlRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESL 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 517 KAKVEELEEDKKTLRettpdNSVAHLQDELIASKLREAEASLSLKDLKQRVQELSSQWQRQLAENQRSESERTTNAvdst 596
Cdd:TIGR02168 357 EAELEELEAELEELE-----SRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELL---- 427
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 62484206 597 PKKLLTNFFDSSKSSEHTQKLEEELMTTRIREMETLTELKELRLKVMELETQVQVSTNQLRRQDEEHKKLKEELE 671
Cdd:TIGR02168 428 KKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLE 502
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
449-759 |
4.58e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.55 E-value: 4.58e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 449 EEVRGLSLRLQ----ENNVSIDSNNSRQSSIDELCMKEEALKQRDEMVS----CLLEELVKVRQGLAESEDQIRNLKAKV 520
Cdd:TIGR02169 674 AELQRLRERLEglkrELSSLQSELRRIENRLDELSQELSDASRKIGEIEkeieQLEQEEEKLKERLEELEEDLSSLEQEI 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 521 EELEEDKKTLRETTPDNsvahlqdELIASKLREAEASLSLKDLKQRVQELSSQWQRQlaENQRSESERTTNAVDSTPKKL 600
Cdd:TIGR02169 754 ENVKSELKELEARIEEL-------EEDLHKLEEALNDLEARLSHSRIPEIQAELSKL--EEEVSRIEARLREIEQKLNRL 824
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 601 LTNFFDSSKSSEHTQKL-------------EEELMTTRIREMETltELKELRLKVMELEtqvqvstnqlrrqdEEHKKLK 667
Cdd:TIGR02169 825 TLEKEYLEKEIQELQEQridlkeqiksiekEIENLNGKKEELEE--ELEELEAALRDLE--------------SRLGDLK 888
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 668 EELEmavtrekDMSNKAREQQHRYSDLESRMKDELMNVKikftEQSQTVAELKQEISRLETKNSEMLAEGELRANLDDSD 747
Cdd:TIGR02169 889 KERD-------ELEAQLRELERKIEELEAQIEKKRKRLS----ELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQ 957
|
330
....*....|...
gi 62484206 748 KVRD-LQDRLADM 759
Cdd:TIGR02169 958 AELQrVEEEIRAL 970
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
385-763 |
9.63e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.38 E-value: 9.63e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 385 RRENCLLKQRNEL--LEAESAELADRLVRGQVSRAEEEETSYAIQTELMQLRRSYLEVSHQLENANEEVRGLSLRLQENN 462
Cdd:TIGR02168 667 KTNSSILERRREIeeLEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLE 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 463 VSIDSNNSRQssidelcmkEEALKQRDEmvscLLEELVKVRQGLAESEDQIRNLKAKVEELEEDKKTLRETtpdnsvahl 542
Cdd:TIGR02168 747 ERIAQLSKEL---------TELEAEIEE----LEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREA--------- 804
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 543 qdeliaskLREAEASLSlkDLKQRVQELSSQWQRqlAENQRSESERTTNAVDSTPKKLltnffdssksSEHTQKLEEElm 622
Cdd:TIGR02168 805 --------LDELRAELT--LLNEEAANLRERLES--LERRIAATERRLEDLEEQIEEL----------SEDIESLAAE-- 860
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 623 ttrireMETLTELKElrlkvmELETQVQVSTNQLRRQDEEHKKLKEELEMAVTREKDMSNKAREQQHRYSDLESRMKD-- 700
Cdd:TIGR02168 861 ------IEELEELIE------ELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQle 928
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 701 --------ELMNVKIKFTEQSQTVAELKQEISRlETKNSEMLAEGELRA-----------NLDDSDKVRDLQDRLADMKA 761
Cdd:TIGR02168 929 lrleglevRIDNLQERLSEEYSLTLEEAEALEN-KIEDDEEEARRRLKRlenkikelgpvNLAAIEEYEELKERYDFLTA 1007
|
..
gi 62484206 762 EY 763
Cdd:TIGR02168 1008 QK 1009
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
359-706 |
7.13e-09 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 59.60 E-value: 7.13e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 359 RMKKMEKEYQDLKKKEQEEMAELRRLRRENCllkqRNELLEAESAElaDRLVRGQVSRAEEEETSYAIQTELMQLRRSYL 438
Cdd:pfam02463 166 RLKRKKKEALKKLIEETENLAELIIDLEELK----LQELKLKEQAK--KALEYYQLKEKLELEEEYLLYLDYLKLNEERI 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 439 EVSHQLENANEEVRGLSLRLQENnvsIDSNNSRQSSIDELCMKEEALKQRDEMVSCLLEELVKVRQGLAESEDQIRNLKA 518
Cdd:pfam02463 240 DLLQELLRDEQEEIESSKQEIEK---EEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKL 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 519 KVEELEEDKKTLRETTPDNSVAHLQDELIASKLREAEASLSLKDLKQRvQELSSQWQRQLAENQRSESERTTNAVDSTPK 598
Cdd:pfam02463 317 KESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKL-QEKLEQLEEELLAKKKLESERLSSAAKLKEE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 599 KLLTNFFDSSKSSEHTQKLEEELMTTRIREMETLTELKELRLKVMELETQVQVSTNQLRRQDEEHKKLKEELEMAVTREK 678
Cdd:pfam02463 396 ELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLK 475
|
330 340
....*....|....*....|....*...
gi 62484206 679 DMSNKAREQQHRysDLESRMKDELMNVK 706
Cdd:pfam02463 476 ETQLVKLQEQLE--LLLSRQKLEERSQK 501
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
338-750 |
1.52e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 58.54 E-value: 1.52e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 338 RVEADVEGFFNLAYSIKLNTKRMKKMEKEYQDLKKKEQEemaelrrLRRENCLLKQRNELLEaESAELADRLVRgqVSRA 417
Cdd:PRK03918 311 EIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKE-------LEKRLEELEERHELYE-EAKAKKEELER--LKKR 380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 418 EEEETSYAIQTELMQLRRSYLEVSHQLENANEEVRGLSLRLQENNVSIDSNNSRQsSIDELCMKEEALKQRDEMVSCLLE 497
Cdd:PRK03918 381 LTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAK-GKCPVCGRELTEEHRKELLEEYTA 459
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 498 ELVKVRQGLAESEDQIRNLKAKVEELEEDKKTLRETTPDNSVA----HLQDELIASKLREAEA-SLSLKDLKQRVQELSS 572
Cdd:PRK03918 460 ELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAeqlkELEEKLKKYNLEELEKkAEEYEKLKEKLIKLKG 539
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 573 QWQRQLAENQR-----SESERTTNAVDSTPKKLltnffdssksSEHTQKLEEELMTTRIREMETLTELKELRLKVMELET 647
Cdd:PRK03918 540 EIKSLKKELEKleelkKKLAELEKKLDELEEEL----------AELLKELEELGFESVEELEERLKELEPFYNEYLELKD 609
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 648 QVQvstnQLRRQDEEHKKLKEELEMAVTREKDMSNKAREQQHRYSDLESRM-KDELMNVKIKFTEQSQTVAELKQEISRL 726
Cdd:PRK03918 610 AEK----ELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYsEEEYEELREEYLELSRELAGLRAELEEL 685
|
410 420
....*....|....*....|....*
gi 62484206 727 ETKNSEMLAEGE-LRANLDDSDKVR 750
Cdd:PRK03918 686 EKRREEIKKTLEkLKEELEEREKAK 710
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
356-762 |
1.81e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 58.15 E-value: 1.81e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 356 NTKRMKKMEKEYQDLKKKEQEEMAELRRLRRENcllKQRNELLEAESAELADRL--VRGQVSRAEEE-ETSYAIQTELMQ 432
Cdd:PRK03918 166 NLGEVIKEIKRRIERLEKFIKRTENIEELIKEK---EKELEEVLREINEISSELpeLREELEKLEKEvKELEELKEEIEE 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 433 LRRSYLEVSHQLENANEEVRGLSLRLQENNVSIDSNNSRQSSIDELCMKEEALKQRDEMVSCLLEELVKVRQGLAESEDQ 512
Cdd:PRK03918 243 LEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEE 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 513 IRNLKAKVEELEEDKKTLRETtpdnsvahlqdeliasKLREAEASLSLKDLKQRVQELssQWQRQLAENQRSESERTTNa 592
Cdd:PRK03918 323 INGIEERIKELEEKEERLEEL----------------KKKLKELEKRLEELEERHELY--EEAKAKKEELERLKKRLTG- 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 593 vdSTPKKLLTNFFDSSKSSEHTQKLEEELmTTRIREMEtlTELKELRLKVMELETQVQVSTNQLRRQDEEHKKlkeELEM 672
Cdd:PRK03918 384 --LTPEKLEKELEELEKAKEEIEEEISKI-TARIGELK--KEIKELKKAIEELKKAKGKCPVCGRELTEEHRK---ELLE 455
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 673 AVTRE-KDMSNKAREQQHRYSDLESRMK--DELMNVKIKFTEQSQTVAELKQEISRLETKNSEMLAEgelranldDSDKV 749
Cdd:PRK03918 456 EYTAElKRIEKELKEIEEKERKLRKELRelEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEK--------KAEEY 527
|
410
....*....|...
gi 62484206 750 RDLQDRLADMKAE 762
Cdd:PRK03918 528 EKLKEKLIKLKGE 540
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
358-743 |
2.89e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 57.84 E-value: 2.89e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 358 KRMKKMEKEYQDLKKKEQEEMAELRRLRRENCLLKQRNELLEAESAELADRLVRGQVSRAEEEETSYAIQTELMQLRRsy 437
Cdd:PTZ00121 1476 KKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKK-- 1553
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 438 levSHQLENAnEEVRglslRLQENNVSIDSNNSRQSSIDELCMKEEAlkqRDEMVSCLLEELVKVRQGLAESEDQIRNLK 517
Cdd:PTZ00121 1554 ---AEELKKA-EEKK----KAEEAKKAEEDKNMALRKAEEAKKAEEA---RIEEVMKLYEEEKKMKAEEAKKAEEAKIKA 1622
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 518 AKVEELEEDKKTLRETTPDNSvahlQDELIASKLREAEASLSLK--DLKQRVQElssqwQRQLAENQRSESERTTNAVDS 595
Cdd:PTZ00121 1623 EELKKAEEEKKKVEQLKKKEA----EEKKKAEELKKAEEENKIKaaEEAKKAEE-----DKKKAEEAKKAEEDEKKAAEA 1693
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 596 TPKKLltnffDSSKSSEHTQKLEEElmttRIREMETLTELKELRlkvmeletqvQVSTNQLRRQDEEHKKLKEELEMAVT 675
Cdd:PTZ00121 1694 LKKEA-----EEAKKAEELKKKEAE----EKKKAEELKKAEEEN----------KIKAEEAKKEAEEDKKKAEEAKKDEE 1754
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 62484206 676 REKDMSNKAREQQHRysdLESRMKDELMNVKIKFTEQSQTVAELKQEISRLETKNSEMLAEGELRANL 743
Cdd:PTZ00121 1755 EKKKIAHLKKEEEKK---AEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNL 1819
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
497-757 |
4.22e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 55.93 E-value: 4.22e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 497 EELVKVRQGLAESEDQIRNLKAKVEELEEDKKTLrettpDNSVAHLQDELIASKLREAEASLSLKDLKQRVQELssqwQR 576
Cdd:COG4942 27 AELEQLQQEIAELEKELAALKKEEKALLKQLAAL-----ERRIAALARRIRALEQELAALEAELAELEKEIAEL----RA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 577 QLAENQRSESERTTNAVDSTPKKLLTNFFDSSKSSEHtqkleeelmttrIREMETLTELKELRLKVMEletqvqvstnQL 656
Cdd:COG4942 98 ELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDA------------VRRLQYLKYLAPARREQAE----------EL 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 657 RRQDEEHKKLKEELEMAVTREKDMSNKAREQQHRYSDLESRMKDELMNVKIKFTEQSQTVAELKQEISRLETKNSEMLAE 736
Cdd:COG4942 156 RADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
250 260
....*....|....*....|.
gi 62484206 737 GELRANLDDSDKVRDLQDRLA 757
Cdd:COG4942 236 AAAAAERTPAAGFAALKGKLP 256
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
353-700 |
4.60e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.99 E-value: 4.60e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 353 IKLNTKRMKKME-------KEYQDLkKKEQEEM--------AELRRLRRENCLLKQRNELLEAESAELADRLVRGQVSRA 417
Cdd:TIGR02168 679 IEELEEKIEELEekiaeleKALAEL-RKELEELeeeleqlrKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELT 757
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 418 EEEETSYAIQTELMQLRRSYLEVSHQLENANEEVRGLSLRLQENNvsidsnnsrqSSIDELCMKEEALKqrdemvscllE 497
Cdd:TIGR02168 758 ELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALR----------EALDELRAELTLLN----------E 817
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 498 ELVKVRQGLAESEDQIRNLKAKVEELEEDKKTLREttpdnSVAHLQDELIASKLREAEASLSLKDLKQRVQelSSQWQRQ 577
Cdd:TIGR02168 818 EAANLRERLESLERRIAATERRLEDLEEQIEELSE-----DIESLAAEIEELEELIEELESELEALLNERA--SLEEALA 890
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 578 LAENQRSESERTTNAVDSTPKKLLTnffDSSKSSEHTQKLEEELMTTRIREMETLTELKEL-RLKVMELETQVQVSTNQL 656
Cdd:TIGR02168 891 LLRSELEELSEELRELESKRSELRR---ELEELREKLAQLELRLEGLEVRIDNLQERLSEEySLTLEEAEALENKIEDDE 967
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 62484206 657 RRQDEEHKKLKEELE------MAVTREkdmsnkAREQQHRYSDLESRMKD 700
Cdd:TIGR02168 968 EEARRRLKRLENKIKelgpvnLAAIEE------YEELKERYDFLTAQKED 1011
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
357-583 |
8.94e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 55.71 E-value: 8.94e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 357 TKRMKKMEKEYQDLKKKEQEEMAELRRLRRENCLLKQRNELLEAESAELADRLVRGQVSRAEEEETSYAIQTELMQLRRS 436
Cdd:COG1196 294 LAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAE 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 437 YLEVSHQLENANEEVRGLSLRLQENNVSIDSNNSRQSSI-DELCMKEEALKQRDEMVSCLLEELVKVRQGLAESEDQIRN 515
Cdd:COG1196 374 LAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALlERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAE 453
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 62484206 516 LKAKVEELEEDKKTLRETTpdNSVAHLQDELIASKLREAEASLSLKDLKQRVQELSSQWQRQLAENQR 583
Cdd:COG1196 454 LEEEEEALLELLAELLEEA--ALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGL 519
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
443-763 |
1.14e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.46 E-value: 1.14e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 443 QLENANEEVRGLSLRLQENNVSIDSNNSRQSSIDElcMKEEALKQRDemvscLLEELVKVRQGL-----AESEDQIRNLK 517
Cdd:TIGR02169 171 KKEKALEELEEVEENIERLDLIIDEKRQQLERLRR--EREKAERYQA-----LLKEKREYEGYEllkekEALERQKEAIE 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 518 AKVEELEEDKKTLRETTPDNSvahLQDELIASKLREAEASLSLK------DLKQRVQELSSQwqRQLAENQRSESERTTN 591
Cdd:TIGR02169 244 RQLASLEEELEKLTEEISELE---KRLEEIEQLLEELNKKIKDLgeeeqlRVKEKIGELEAE--IASLERSIAEKERELE 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 592 AVDSTPKKLltnFFDSSKSSEHTQKLEEELMTTRIREMETLTELKELRLKVMELETQVQVSTNQLRRQDEEHKKLKEELE 671
Cdd:TIGR02169 319 DAEERLAKL---EAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 672 MaVTREKDMSNKAR-----EQQHRYSDLEsRMKDELMNVKIKFTEQSQTVAELKQEISRLETKNSEMLA--EGELRANLD 744
Cdd:TIGR02169 396 K-LKREINELKRELdrlqeELQRLSEELA-DLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAAdlSKYEQELYD 473
|
330
....*....|....*....
gi 62484206 745 DSDKVRDLQDRLADMKAEY 763
Cdd:TIGR02169 474 LKEEYDRVEKELSKLQREL 492
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
350-572 |
4.81e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.52 E-value: 4.81e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 350 AYSIKLNTKR--MKKMEKEYQDLKKKEQEEMAELRRLRRENCLLKQRNELLEAESAELADRLVRGQVSRAEEEETSYAIQ 427
Cdd:TIGR02168 264 ELEEKLEELRleVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELE 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 428 TELMQLRRSYLEVSHQLENANEEVRGLSLRLQENNV--------------SIDSNNSRQSSID-ELCMKEEALKQRDEMV 492
Cdd:TIGR02168 344 EKLEELKEELESLEAELEELEAELEELESRLEELEEqletlrskvaqlelQIASLNNEIERLEaRLERLEDRRERLQQEI 423
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 493 SCLLEELV-----KVRQGLAESEDQIRNLKAKVEELEEDKKTLREttpdnSVAHLQDELIASKLREAEASLSLKDLKQRV 567
Cdd:TIGR02168 424 EELLKKLEeaelkELQAELEELEEELEELQEELERLEEALEELRE-----ELEEAEQALDAAERELAQLQARLDSLERLQ 498
|
....*
gi 62484206 568 QELSS 572
Cdd:TIGR02168 499 ENLEG 503
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
358-728 |
9.57e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.76 E-value: 9.57e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 358 KRMKKMEKEyqdlkKKEQEEMAELRRLRREnclLKQRNELLEAESAELADRLVRGQVSRAEEEETSyaIQTELMQLRRSY 437
Cdd:TIGR02169 198 QQLERLRRE-----REKAERYQALLKEKRE---YEGYELLKEKEALERQKEAIERQLASLEEELEK--LTEEISELEKRL 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 438 LEVSHQLENANEEVRGLS----LRLQENNVSIDSNNSR-QSSIDElcmKEEALKQRDEMVSCLLEELVKVRQGLAESEDQ 512
Cdd:TIGR02169 268 EEIEQLLEELNKKIKDLGeeeqLRVKEKIGELEAEIASlERSIAE---KERELEDAEERLAKLEAEIDKLLAEIEELERE 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 513 IRNLKAKVEELEEDKKTLRETTPDnSVAHLQDEliasklrEAEASLSLKDLKQRVQELSSqwqrqlAENQRSESERTTNA 592
Cdd:TIGR02169 345 IEEERKRRDKLTEEYAELKEELED-LRAELEEV-------DKEFAETRDELKDYREKLEK------LKREINELKRELDR 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 593 VDSTPKKLltnffdSSKSSEHTQKLEEelMTTRIREMETltELKELRLKVMELETQVQVSTNQLRRQDEEHKKLKEElem 672
Cdd:TIGR02169 411 LQEELQRL------SEELADLNAAIAG--IEAKINELEE--EKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEE--- 477
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 62484206 673 avtrekdmsnkareqqhrYSDLESRMKdelmnvkikfteqsqtvaELKQEISRLET 728
Cdd:TIGR02169 478 ------------------YDRVEKELS------------------KLQRELAEAEA 497
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
358-727 |
9.88e-07 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 52.43 E-value: 9.88e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 358 KRMKKMEKEYQDLKKKEQEEMAelrrlrREnclLKQRNELLEAESAELADrlvrgqvsrAEEEETSYAIQTELMQLRRSY 437
Cdd:pfam17380 288 QQQEKFEKMEQERLRQEKEEKA------RE---VERRRKLEEAEKARQAE---------MDRQAAIYAEQERMAMERERE 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 438 LEVSHQLENANEEVRglsLRLQENNVSIdsnnSRQSSIDELCMKEEalkQRDEMVSCLLEELVKVRQGLAESEDQIRNLK 517
Cdd:pfam17380 350 LERIRQEERKRELER---IRQEEIAMEI----SRMRELERLQMERQ---QKNERVRQELEAARKVKILEEERQRKIQQQK 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 518 AKVEELEEDKKTLRETtpdnSVAHLQDEliasKLREAEaslslkdlKQRVQELSSQWQRQLAENQRSESERTTNAVDSTP 597
Cdd:pfam17380 420 VEMEQIRAEQEEARQR----EVRRLEEE----RAREME--------RVRLEEQERQQQVERLRQQEEERKRKKLELEKEK 483
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 598 KklltnffDSSKSSEHTQKLEEELMTTRIREMETLTELKELRLKVMElETQVQVSTNQLRRQDEEHKKLKEELEmavtRE 677
Cdd:pfam17380 484 R-------DRKRAEEQRRKILEKELEERKQAMIEEERKRKLLEKEME-ERQKAIYEEERRREAEEERRKQQEME----ER 551
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 62484206 678 KDMSNKAREQQHRYSDLESRMKDELMNVKIKFTEQSQTVAELKQEISRLE 727
Cdd:pfam17380 552 RRIQEQMRKATEERSRLEAMEREREMMRQIVESEKARAEYEATTPITTIK 601
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
391-583 |
1.38e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 51.94 E-value: 1.38e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 391 LKQRNELLEAESAELADRL--VRGQVSRAEEEETSYAIQTELMQLRRSYLEVSHQLENANEEVRGLSLRLQENNVSIDSN 468
Cdd:COG3206 166 LELRREEARKALEFLEEQLpeLRKELEEAEAALEEFRQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAAL 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 469 NSRQSSIDElcmkEEALKQRDEMVSCLLEELVKVRQGLAE-----SED--QIRNLKAKVEELEEDKKTLRETTpdnsVAH 541
Cdd:COG3206 246 RAQLGSGPD----ALPELLQSPVIQQLRAQLAELEAELAElsaryTPNhpDVIALRAQIAALRAQLQQEAQRI----LAS 317
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 62484206 542 LQDELIASKLREAEASLSLKDLKQRVQELSSQwQRQLAENQR 583
Cdd:COG3206 318 LEAELEALQAREASLQAQLAQLEARLAELPEL-EAELRRLER 358
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
500-763 |
2.38e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.21 E-value: 2.38e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 500 VKVRQGLAESEDQIRNLKAKVEELEED-------KKTLRETTPD--NSVAHLQDELIASKLREAEASLSLKDLKQRVQEL 570
Cdd:TIGR02168 666 AKTNSSILERRREIEELEEKIEELEEKiaelekaLAELRKELEEleEELEQLRKELEELSRQISALRKDLARLEAEVEQL 745
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 571 SSQWQRQLAENQRSESERTtnavdstpkklltnffdsskssehtqKLEEELMTTRIREMETLTELKELRLKVMELETQVQ 650
Cdd:TIGR02168 746 EERIAQLSKELTELEAEIE--------------------------ELEERLEEAEEELAEAEAEIEELEAQIEQLKEELK 799
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 651 VSTNQLRRQDEEHKKLKEELEMAVTREKDMSNKAREQQHRYSDLESR---MKDELMNVKIKFTEQSQTVAELKQEISRL- 726
Cdd:TIGR02168 800 ALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQieeLSEDIESLAAEIEELEELIEELESELEALl 879
|
250 260 270
....*....|....*....|....*....|....*...
gi 62484206 727 ETKNSEMLAEGELRANLDD-SDKVRDLQDRLADMKAEY 763
Cdd:TIGR02168 880 NERASLEEALALLRSELEElSEELRELESKRSELRREL 917
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
358-763 |
2.87e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.09 E-value: 2.87e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 358 KRMKKMEKEYQDLKKKEQEEMAELRRLRRENCLLKQRNELLEAESAELADRLVRGQVSRAEEEETSYAIQTELMQLRRSY 437
Cdd:COG1196 414 ERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARL 493
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 438 ---LEVSHQLENANEEVRGLSLRLQENNVSIDsnnsrqssIDELCMKEEALkqRDEMVSCLLEELV-KVRQGLAESEDQI 513
Cdd:COG1196 494 lllLEAEADYEGFLEGVKAALLLAGLRGLAGA--------VAVLIGVEAAY--EAALEAALAAALQnIVVEDDEVAAAAI 563
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 514 RNLKAK----VEELEEDKKTLRETTPDNSVAHLQDE---LIASKLREAEASLSLKDL----KQRVQELSSQWQRQLAENQ 582
Cdd:COG1196 564 EYLKAAkagrATFLPLDKIRARAALAAALARGAIGAavdLVASDLREADARYYVLGDtllgRTLVAARLEAALRRAVTLA 643
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 583 RSESERTTNAVDSTPKKLLTNFFDSSKSSEHTQKLEEELmttRIREMETLTELKELRLKVMELETQVQVSTNQLRRQDEE 662
Cdd:COG1196 644 GRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELE---ELAERLAEEELELEEALLAEEEEERELAEAEEERLEEE 720
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 663 HKKLKEELEMAVTREKdmsnkAREQQHRYSDLESRMKDELMNVKIKFTEQSQTVAELKQEISRLETKNseMLAEGELRAn 742
Cdd:COG1196 721 LEEEALEEQLEAEREE-----LLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALGPVN--LLAIEEYEE- 792
|
410 420
....*....|....*....|.
gi 62484206 743 lddsdkvrdLQDRLADMKAEY 763
Cdd:COG1196 793 ---------LEERYDFLSEQR 804
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
357-762 |
4.14e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 50.42 E-value: 4.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 357 TKRMKKMEKEYQDLKKKEQEEMAELRRLRRENCLLKQRNELLEAESAELADRLVRGQVSRAEEEETSYAIQTELMQLRRS 436
Cdd:PRK02224 320 EDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRER 399
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 437 YLEVSHQLENANEEVRGLSLRLQENNVSIDSNNSRQSSIDELCMKEEALKQ-----------RDEMVSCLLEE----LVK 501
Cdd:PRK02224 400 FGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEagkcpecgqpvEGSPHVETIEEdrerVEE 479
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 502 VRQGLAESEDQIRNLKAKVEELEEDKKTLRETTPDNSVAHLQDELIASKLREAEA-SLSLKDLKQRVQELSS--QWQRQL 578
Cdd:PRK02224 480 LEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEkRERAEELRERAAELEAeaEEKREA 559
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 579 AENQRSESERTTNAVDSTPKKLLTNffdssksSEHTQKLE--EELMTTRIREMETLTELKELRLKVMELETQvqvSTNQL 656
Cdd:PRK02224 560 AAEAEEEAEEAREEVAELNSKLAEL-------KERIESLEriRTLLAAIADAEDEIERLREKREALAELNDE---RRERL 629
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 657 RRQDEEHKKLKEELEMAVTREkdmsnkAREQQHRYSDLESRMKDELMNVKIKFTEQSQTVAELKQEISRLETKNSEMLAE 736
Cdd:PRK02224 630 AEKRERKRELEAEFDEARIEE------AREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEELRERREAL 703
|
410 420
....*....|....*....|....*..
gi 62484206 737 GELRANLDD-SDKVRDLQDRLADMKAE 762
Cdd:PRK02224 704 ENRVEALEAlYDEAEELESMYGDLRAE 730
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
354-732 |
5.04e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 50.36 E-value: 5.04e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 354 KLNTKRMKKMEKEYQDLKKKEQEEMAELRRLRRENCLLKQRNELLEAESAEladrlvrgqvsRAEEEETSYAIQTELMQL 433
Cdd:pfam02463 644 KESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEI-----------LRRQLEIKKKEQREKEEL 712
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 434 RRSYLEVSHQLENAneevrglsLRLQENNVSIDSNNSRQSSIDELCMKEEALKQRDEMVSCLLEELVKVRQGLAESEDQI 513
Cdd:pfam02463 713 KKLKLEAEELLADR--------VQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTE 784
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 514 RNLKA--KVEELEEDKKTLRETTPDNSVAHLQDELIASKLREAEASLSLKDLKQRVQELSSQWQRQLA-ENQRSESERTT 590
Cdd:pfam02463 785 KLKVEeeKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAeEELERLEEEIT 864
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 591 NAVDSTPKKLLTNFFDSSKSSEHTQKLEEELMTTRIREMETLTELKELRLKVMELETQVQVSTNQLRRQDEEHKKLKEEL 670
Cdd:pfam02463 865 KEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEE 944
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 62484206 671 EMavtrEKDMSNKAREQQHRYSDLESRMKDELMNVKIKFTEQSQTVAELKQEISRLETKNSE 732
Cdd:pfam02463 945 AD----EKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEE 1002
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
362-671 |
6.46e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 49.68 E-value: 6.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 362 KMEKEYQDLKKKEQEEMAELRRLRRENCLLKQRNELLEAESAELADRLVRGQVSRAEEEETsyaiqtELMQLRRSYLEVS 441
Cdd:PRK03918 388 KLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEE------HRKELLEEYTAEL 461
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 442 HQLENANEEVRGLSLRLQENNVSIDSNNSRQSSI-------DELCMKEEALKQRD-EMVSCLLEELVKVRQGLAESEDQI 513
Cdd:PRK03918 462 KRIEKELKEIEEKERKLRKELRELEKVLKKESELiklkelaEQLKELEEKLKKYNlEELEKKAEEYEKLKEKLIKLKGEI 541
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 514 RNLKAKVEELEEDKKTLRETtpDNSVAHLQDEL--IASKLREAEASlSLKDLKQRVQELSSQWQRQL-AENQRSESERTT 590
Cdd:PRK03918 542 KSLKKELEKLEELKKKLAEL--EKKLDELEEELaeLLKELEELGFE-SVEELEERLKELEPFYNEYLeLKDAEKELEREE 618
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 591 NAVDSTPKKLLTNFFDSSKSSEHTQKL------------EEELMTTRIREMETLTELKELRLKVMELETQVQV---STNQ 655
Cdd:PRK03918 619 KELKKLEEELDKAFEELAETEKRLEELrkeleelekkysEEEYEELREEYLELSRELAGLRAELEELEKRREEikkTLEK 698
|
330
....*....|....*.
gi 62484206 656 LRRQDEEHKKLKEELE 671
Cdd:PRK03918 699 LKEELEEREKAKKELE 714
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
358-600 |
7.09e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.99 E-value: 7.09e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 358 KRMKKMEKEYQDLKKKEQEEMAELRRLRRENCLLKQRNELLEAESAELADRLVRGQVSRAEEEETSYAIQTELMQL---- 433
Cdd:COG4942 34 QEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELlral 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 434 ----RRSYLEVSHQLENANEEVRGLSLrLQEnnvsidSNNSRQSSIDELCMKEEALKQrdemvscLLEELVKVRQGLAES 509
Cdd:COG4942 114 yrlgRQPPLALLLSPEDFLDAVRRLQY-LKY------LAPARREQAEELRADLAELAA-------LRAELEAERAELEAL 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 510 EDQIRNLKAKVEELEEDKKTLRETtpdnsvahlqdelIASKLREAEAslSLKDLKQRVQELSSQWQRQLAENQRSESERT 589
Cdd:COG4942 180 LAELEEERAALEALKAERQKLLAR-------------LEKELAELAA--ELAELQQEAEELEALIARLEAEAAAAAERTP 244
|
250
....*....|.
gi 62484206 590 TNAVDSTPKKL 600
Cdd:COG4942 245 AAGFAALKGKL 255
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
357-588 |
7.45e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.55 E-value: 7.45e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 357 TKRMKKMEKEYQDLKKKEQEEMAELRRLRRENCLLKQRNELLEAESAELADRLVRGQVSRAEEEETSYAIQTELMQLRRS 436
Cdd:COG1196 280 ELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAE 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 437 YLEVSHQLENANEEVRGLSLRLQENNVSIDSNNSRQssidelcmkEEALKQRDEmvscLLEELVKVRQGLAESEDQIRNL 516
Cdd:COG1196 360 LAEAEEALLEAEAELAEAEEELEELAEELLEALRAA---------AELAAQLEE----LEEAEEALLERLERLEEELEEL 426
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 62484206 517 KAKVEELEEDKKTLRETtpdnsvahlQDELIASKLREAEASLSLKDLKQRVQELSSQWQRQLAENQRSESER 588
Cdd:COG1196 427 EEALAELEEEEEEEEEA---------LEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEA 489
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
354-762 |
7.93e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.38 E-value: 7.93e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 354 KLNTKRMKKMEKEYQDLKKKEQEEMAELRRLRRenclLKQRNELLEAESAELADRLvrgqvSRAEEEETSYAIQTELMQL 433
Cdd:COG4717 67 ELNLKELKELEEELKEAEEKEEEYAELQEELEE----LEEELEELEAELEELREEL-----EKLEKLLQLLPLYQELEAL 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 434 RRSYLEVSHQLENANEEVRGLSLRLQENNVSIDSNNSRQSSIDELCMKEEALKQRDemVSCLLEELVKVRQGLAESEDQI 513
Cdd:COG4717 138 EAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEE--LQDLAEELEELQQRLAELEEEL 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 514 RNLKAKVEELEEDKKTLRETTPDNSVAHLQDELIASKLREAE------ASLSLKDLKQRVQEL------------SSQWQ 575
Cdd:COG4717 216 EEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAAllallgLGGSLLSLILTIAGVlflvlgllallfLLLAR 295
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 576 RQLAENQRSESERTTNAVDSTPKKLLTNFFDSskssehtQKLEEELMTTRIRE-METLTELKELRLKVMELETQVQVSTN 654
Cdd:COG4717 296 EKASLGKEAEELQALPALEELEEEELEELLAA-------LGLPPDLSPEELLElLDRIEELQELLREAEELEEELQLEEL 368
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 655 QLRRQ---DEEHKKLKEELEMAVTREKDMSNKAREQQHRYSDLESRMKDELMNVKIKFTEQ-SQTVAELKQEISRLETKN 730
Cdd:COG4717 369 EQEIAallAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEElEEELEELEEELEELEEEL 448
|
410 420 430
....*....|....*....|....*....|....*.
gi 62484206 731 SEMLAE-GELRA---NLDDSDKVRDLQDRLADMKAE 762
Cdd:COG4717 449 EELREElAELEAeleQLEEDGELAELLQELEELKAE 484
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
354-732 |
1.03e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 49.25 E-value: 1.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 354 KLNTKRMKKmEKEYQDLKKKEQeemaelrrlrRENCLLKQRNELlEAESAELADRLVRGQVSRAEEEETSYAIQTELMQL 433
Cdd:TIGR04523 191 KIKNKLLKL-ELLLSNLKKKIQ----------KNKSLESQISEL-KKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQL 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 434 RRSYLEVSHQL-------ENANEEVRGLSLRLQENNVSI-DSNNSRQSSIDELcMKEEaLKQRDEMVSCLLEELVKVRQG 505
Cdd:TIGR04523 259 KDEQNKIKKQLsekqkelEQNNKKIKELEKQLNQLKSEIsDLNNQKEQDWNKE-LKSE-LKNQEKKLEEIQNQISQNNKI 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 506 LAESEDQIRNLKAKVEELEEDKKTLrettpDNSVAHLQDELIASKLREAEASLSLKDLKQRVQELSSQWQRQLAENQRSE 585
Cdd:TIGR04523 337 ISQLNEQISQLKKELTNSESENSEK-----QRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKD 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 586 SE------------------RTTNAVDSTPKKLLTN-------FFDSSKSSEHTQKLEEELMTTRIREMETLTE--LKEL 638
Cdd:TIGR04523 412 EQikklqqekellekeierlKETIIKNNSEIKDLTNqdsvkelIIKNLDNTRESLETQLKVLSRSINKIKQNLEqkQKEL 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 639 RLKVMELETQvqvsTNQLRRQDEEHKKLKEELEMAVTREKDMSNKAREQQHRYSDLES---RMKDELMNVKIK--FTEQS 713
Cdd:TIGR04523 492 KSKEKELKKL----NEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDelnKDDFELKKENLEkeIDEKN 567
|
410
....*....|....*....
gi 62484206 714 QTVAELKQEISRLETKNSE 732
Cdd:TIGR04523 568 KEIEELKQTQKSLKKKQEE 586
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
348-761 |
1.42e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 48.56 E-value: 1.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 348 NLAYSIKLNTKRMKKMEKEYQ-------DLKKKEQEEMAELRRLRRENCLLKQRnelLEAESAELaDRLVRGQVSRAEEE 420
Cdd:pfam05483 300 DIKMSLQRSMSTQKALEEDLQiatkticQLTEEKEAQMEELNKAKAAHSFVVTE---FEATTCSL-EELLRTEQQRLEKN 375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 421 ETSYAIQTELMQLRRSYLEVSHQLENANE-EVRGLSLRLQENNVSIDSNNSRQSSIDELCMKEEAL----KQRDEMVSCL 495
Cdd:pfam05483 376 EDQLKIITMELQKKSSELEEMTKFKNNKEvELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELifllQAREKEIHDL 455
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 496 LEELVKVRQGLAESEDQIRNLKAkveELEEDKKTLRETTPDNSVAHLQDELIASKlrEAEASLSLKDLKQRVQELSSQWQ 575
Cdd:pfam05483 456 EIQLTAIKTSEEHYLKEVEDLKT---ELEKEKLKNIELTAHCDKLLLENKELTQE--ASDMTLELKKHQEDIINCKKQEE 530
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 576 RQLA--ENQRSESERTTNAVDSTPKKLLtnffdsSKSSEHTQKLEEELMTTRIREMETLTELKELRLkvmeletqVQVST 653
Cdd:pfam05483 531 RMLKqiENLEEKEMNLRDELESVREEFI------QKGDEVKCKLDKSEENARSIEYEVLKKEKQMKI--------LENKC 596
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 654 NQLRRQDEEHKKLKEELEMAVTREKDMSNKAREQQHRYSDLESRMKDELMNVKIKFTEQSQTvaeLKQEISRLETKNSEM 733
Cdd:pfam05483 597 NNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIIDN---YQKEIEDKKISEEKL 673
|
410 420 430
....*....|....*....|....*....|....
gi 62484206 734 LAEGE-LRANLDDSDKVRD-----LQDRLADMKA 761
Cdd:pfam05483 674 LEEVEkAKAIADEAVKLQKeidkrCQHKIAEMVA 707
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
454-650 |
1.87e-05 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 48.37 E-value: 1.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 454 LSLRLQENNVSIDSNNSRQSSIDELcMKEEALKQRDEMVSCLLEELVKVRQGLAESEDQIRNLKAKVEELEEdkkTLRET 533
Cdd:PRK11281 24 SAFARAASNGDLPTEADVQAQLDAL-NKQKLLEAEDKLVQQDLEQTLALLDKIDRQKEETEQLKQQLAQAPA---KLRQA 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 534 TpdNSVAHLQDELiASKLREAEASLSLKDLKQRVQELSSQ---WQRQLAE------NQRSESERTTNAVDSTPK------ 598
Cdd:PRK11281 100 Q--AELEALKDDN-DEETRETLSTLSLRQLESRLAQTLDQlqnAQNDLAEynsqlvSLQTQPERAQAALYANSQrlqqir 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 62484206 599 KLLTNFFDSSKSSEHTQK--LEEEL------MTTRIREME---TLTEL-----KELRLKVMELETQVQ 650
Cdd:PRK11281 177 NLLKGGKVGGKALRPSQRvlLQAEQallnaqNDLQRKSLEgntQLQDLlqkqrDYLTARIQRLEHQLQ 244
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
472-681 |
2.63e-05 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 47.71 E-value: 2.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 472 QSSIDELCMKEEALKqrdemvscllEELVKVRQGLAESEDQIRNLKAKVEELEEDKKTLRET-----TPDNSVAHLQDEL 546
Cdd:pfam05667 341 QEQLEDLESSIQELE----------KEIKKLESSIKQVEEELEELKEQNEELEKQYKVKKKTldllpDAEENIAKLQALV 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 547 IASKlreaeaslslkdlkQRVQELSSQW---QRQLAENQRSESERTTNavdstpkklltnffdssKSSEHTQKLEeelmt 623
Cdd:pfam05667 411 DASA--------------QRLVELAGQWekhRVPLIEEYRALKEAKSN-----------------KEDESQRKLE----- 454
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 62484206 624 triremetltELKELRlkvmeleTQVQVSTNQLRRQDEEHKKLKEELEmavTREKDMS 681
Cdd:pfam05667 455 ----------EIKELR-------EKIKEVAEEAKQKEELYKQLVAEYE---RLPKDVS 492
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
472-762 |
3.02e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 47.73 E-value: 3.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 472 QSSIDELCMKEEALKQRDEMVSCLLEELVKVRQGLAESEDQIRNLKAKVEELEEDKKTLRETTPD--NSVAHLQDElIAS 549
Cdd:PRK02224 219 DEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDlrERLEELEEE-RDD 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 550 KLREAE-ASLSLKDLKQRVQELSSQWQ--RQLAENQRSESERTTNAVDSTPKKLLTNFFDSSKSSEHTQKLEEELMTTRI 626
Cdd:PRK02224 298 LLAEAGlDDADAEAVEARREELEDRDEelRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEARE 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 627 REMETLTELKELRLKVMELETQVQVSTNQLRRQDEEHKKLKEELEMAVTREKDMSNKAREQQHRYSDLE----------- 695
Cdd:PRK02224 378 AVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEalleagkcpec 457
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 62484206 696 ------SRMKDELMNVKIKFTEQSQTVAELKQEISRLETK--NSEMLAEGELRANlDDSDKVRDLQDRLADMKAE 762
Cdd:PRK02224 458 gqpvegSPHVETIEEDRERVEELEAELEDLEEEVEEVEERleRAEDLVEAEDRIE-RLEERREDLEELIAERRET 531
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
363-639 |
3.96e-05 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 46.81 E-value: 3.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 363 MEKEYQDLKKKEQEEMAELRRLRRENCLLKQRNELLEAESAELADRLVRGQVSRAEEEETSYAIQTELMQlrrsylevsh 442
Cdd:pfam07888 113 LSEEKDALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQ---------- 182
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 443 qlenANEEVRGLSLRLQENNVSIDSNNSR----QSSIDELCMKEEALKQRDEMVSCLLEELVKVRQGLAESEDQIRNLKA 518
Cdd:pfam07888 183 ----TEEELRSLSKEFQELRNSLAQRDTQvlqlQDTITTLTQKLTTAHRKEAENEALLEELRSLQERLNASERKVEGLGE 258
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 519 KVEELEEDKKtlrettpdnsvaHLQDELIASKLREAEASLSLKDLKQRVQELSSQWQ------RQLAENQRSESERTTNA 592
Cdd:pfam07888 259 ELSSMAAQRD------------RTQAELHQARLQAAQLTLQLADASLALREGRARWAqeretlQQSAEADKDRIEKLSAE 326
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 62484206 593 VDSTPKKLltnffdsSKSSEHTQKLEEELM----TTRIREMETLTELKELR 639
Cdd:pfam07888 327 LQRLEERL-------QEERMEREKLEVELGrekdCNRVQLSESRRELQELK 370
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
363-763 |
4.83e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 46.96 E-value: 4.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 363 MEKEYQDLKKKEQEEMAELRRLRRENCLLKQRNELLEAESAELADRLVRGQVSRAEEEETSYAIQTELMQLRRSYLEVSH 442
Cdd:PRK02224 256 LEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRV 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 443 QLENANEEVRGL---SLRLQENNVSIDSNNSRQSSidELCMKEEALKQRDEMVSCLLEELVKVRQGLAESEDQIRNLKAK 519
Cdd:PRK02224 336 AAQAHNEEAESLredADDLEERAEELREEAAELES--ELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDF 413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 520 VEELEEDKKTLRE---------TTPDNSVAHLQDELIASK-------LREAEASLSLKDLKQRVQELssqwqrqlaENQR 583
Cdd:PRK02224 414 LEELREERDELREreaeleatlRTARERVEEAEALLEAGKcpecgqpVEGSPHVETIEEDRERVEEL---------EAEL 484
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 584 SESERTTNAVDstpkKLLTNFFDSSKSSEHTQKLEE--ELMTTRIREMETLTELKELRLKvmeletqvqvstnQLRRQDE 661
Cdd:PRK02224 485 EDLEEEVEEVE----ERLERAEDLVEAEDRIERLEErrEDLEELIAERRETIEEKRERAE-------------ELRERAA 547
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 662 EHKKLKEELEMAVTREKDMSNKAREQQHRYSDLESRMKDELMNVKiKFTEQSQTVAELKQEISRLETKNSEMLAEGELRa 741
Cdd:PRK02224 548 ELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLE-RIRTLLAAIADAEDEIERLREKREALAELNDER- 625
|
410 420
....*....|....*....|..
gi 62484206 742 nlddSDKVRDLQDRLADMKAEY 763
Cdd:PRK02224 626 ----RERLAEKRERKRELEAEF 643
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
433-762 |
6.69e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 46.65 E-value: 6.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 433 LRRSYLEVSHQLENANEEVRGLS-LRLQENNVSIDSNNSRQSSIDEL----CMKEEALKQRDEMVscllEELVKVRQGLA 507
Cdd:pfam15921 108 LRQSVIDLQTKLQEMQMERDAMAdIRRRESQSQEDLRNQLQNTVHELeaakCLKEDMLEDSNTQI----EQLRKMMLSHE 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 508 ESEDQIRNLKAKVEELEEDKKTLRETTpdnSVAHLQD--ELIASKLREAEASLSLkdLKQRVQELSSQWQRQLAENQ--- 582
Cdd:pfam15921 184 GVLQEIRSILVDFEEASGKKIYEHDSM---STMHFRSlgSAISKILRELDTEISY--LKGRIFPVEDQLEALKSESQnki 258
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 583 ----RSESERTTNAVDSTPKKL--LTNFFDSSKSSEHTQKLEEELMTTRIREMETLtelkeLRLKVMELETQVQVSTNQL 656
Cdd:pfam15921 259 elllQQHQDRIEQLISEHEVEItgLTEKASSARSQANSIQSQLEIIQEQARNQNSM-----YMRQLSDLESTVSQLRSEL 333
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 657 RRQDEEHKKLKEELEMAVTREKDMSNKAREQQHRYSDLESRMKDELMNVKIKFTEQSQTVAELKQEISRL---ETKNSem 733
Cdd:pfam15921 334 REAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLwdrDTGNS-- 411
|
330 340 350
....*....|....*....|....*....|
gi 62484206 734 LAEGELRANLDDSD-KVRDLQDRLADMKAE 762
Cdd:pfam15921 412 ITIDHLRRELDDRNmEVQRLEALLKAMKSE 441
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
465-750 |
1.76e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 45.45 E-value: 1.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 465 IDSNNSRQSSIDELCMKEEALKQRDEMVSCLLEELVKVRQGLAESEDQIRNLKAKVEELE---EDKKTLRETTpDNSVAH 541
Cdd:COG5022 764 YLQALKRIKKIQVIQHGFRLRRLVDYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQktiKREKKLRETE-EVEFSL 842
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 542 LQDELIASKLREAEASLSLKDLKQRVQELSSQWQRQLAENQRSEserTTNAVDSTPKKLLTNFFDSSKSSEHTQKLEEEL 621
Cdd:COG5022 843 KAEVLIQKFGRSLKAKKRFSLLKKETIYLQSAQRVELAERQLQE---LKIDVKSISSLKLVNLELESEIIELKKSLSSDL 919
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 622 MTTRIREMETLTELKELRLKVM-----ELETQVQVSTNQLRRQDEEHKKLKEELEMAV---TREKDMSNKAREQQHRYSD 693
Cdd:COG5022 920 IENLEFKTELIARLKKLLNNIDleegpSIEYVKLPELNKLHEVESKLKETSEEYEDLLkksTILVREGNKANSELKNFKK 999
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 62484206 694 LESRMKDELMnvkiKFTEQSQTVAELKQEISRLETKNSEMLAEGELRANLDDSDKVR 750
Cdd:COG5022 1000 ELAELSKQYG----ALQESTKQLKELPVEVAELQSASKIISSESTELSILKPLQKLK 1052
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
481-762 |
1.79e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.05 E-value: 1.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 481 KEEALKQRDEMvsclLEELVKVRQGLAESEDQIRNLKAKVEELEEDKKtlrettpdnsvahLQDELiasklREAEASLSL 560
Cdd:TIGR02168 174 RKETERKLERT----RENLDRLEDILNELERQLKSLERQAEKAERYKE-------------LKAEL-----RELELALLV 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 561 KDLKQRVQELSsQWQRQLAENQRSESERTTNAVdstpkklltnffdsskssehtqkleeelmttriremETLTELKELRL 640
Cdd:TIGR02168 232 LRLEELREELE-ELQEELKEAEEELEELTAELQ------------------------------------ELEEKLEELRL 274
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 641 KVMELETQVQVSTNQLRRQDEEHKKLKEELEMAVTREKDMSNKAREQQHRYSDLESR---MKDELMNVKIKFTEQSQTVA 717
Cdd:TIGR02168 275 EVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKldeLAEELAELEEKLEELKEELE 354
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 62484206 718 ELKQEISRLETKNSEM-LAEGELRANLDD-SDKVRDLQDRLADMKAE 762
Cdd:TIGR02168 355 SLEAELEELEAELEELeSRLEELEEQLETlRSKVAQLELQIASLNNE 401
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
358-760 |
1.90e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 45.13 E-value: 1.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 358 KRMKKMEKEYQDLKKKEQEEMAELRRLRRENCLLKQRNELLEAESAELADRLvrgqvSRAEEEETSYAIQTELMQLRRSY 437
Cdd:PTZ00121 1308 KKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEA-----EAAEEKAEAAEKKKEEAKKKADA 1382
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 438 LEVSHQLENANEEVRGLSLRLQENNVSIDSNNSRQSSIDELCMKEEALKQRDEMVScLLEELVKVRQGL--AESEDQIRN 515
Cdd:PTZ00121 1383 AKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKK-KAEEAKKADEAKkkAEEAKKAEE 1461
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 516 LKAKVEE---LEEDKKTLRETTPDNSVAHLQDELI--ASKLREA-EASLSLKDLKQRVQELSSQWQRQLAENQRSESERT 589
Cdd:PTZ00121 1462 AKKKAEEakkADEAKKKAEEAKKADEAKKKAEEAKkkADEAKKAaEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKK 1541
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 590 TNAV---DSTPKKLLTNFFDSSKSSEHTQKlEEELMTTRIREMETLTELKELRLK-VMELETQVQVSTNQLRRQDEEHKK 665
Cdd:PTZ00121 1542 AEEKkkaDELKKAEELKKAEEKKKAEEAKK-AEEDKNMALRKAEEAKKAEEARIEeVMKLYEEEKKMKAEEAKKAEEAKI 1620
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 666 LKEELEMAVTREKDMSNKAREQQHRYSDLESRMKDELMNvKIKFTEQSQTVAELKQEISRL-ETKNSEMLAEGELRANLD 744
Cdd:PTZ00121 1621 KAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEEN-KIKAAEEAKKAEEDKKKAEEAkKAEEDEKKAAEALKKEAE 1699
|
410
....*....|....*.
gi 62484206 745 DSDKVRDLQDRLADMK 760
Cdd:PTZ00121 1700 EAKKAEELKKKEAEEK 1715
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
349-728 |
2.45e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 44.57 E-value: 2.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 349 LAYSIKLNTKRMKKMEKEYQDLKKKEQEEMAELRRLRRENCLLKQRNELLEAE------SAELADRLVRGQVSRAEEEET 422
Cdd:TIGR00618 464 SAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPArqdidnPGPLTRRMQRGEQTYAQLETS 543
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 423 SYAIQTELMQLRRSYLEVSHQLENANEEVrgLSLRLQENNVSIDSNNSRQSSIDELCMKEEALKQRDEMVSCLLEELVK- 501
Cdd:TIGR00618 544 EEDVYHQLTSERKQRASLKEQMQEIQQSF--SILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKl 621
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 502 --------VRQGLAESEDQIRNLKAKVEELEEDKKTLRETTPDNSVAHLQDELIASKLRE------------------AE 555
Cdd:TIGR00618 622 qpeqdlqdVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLAlqkmqsekeqltywkemlAQ 701
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 556 ASLSLKDLKQRVQELSSQWQR--QLAENQRSESERTTNAVDSTPKKLLTNFFDSSKSS--EHTQKLEEELMttrirEMET 631
Cdd:TIGR00618 702 CQTLLRELETHIEEYDREFNEieNASSSLGSDLAAREDALNQSLKELMHQARTVLKARteAHFNNNEEVTA-----ALQT 776
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 632 LTELKELRLKVMELETQVQVSTNQLRRQDEEHKKLKEELEMAVTREKDMSNKAREQQHRYSDLESRMKDELMNVKIKFTE 711
Cdd:TIGR00618 777 GAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEE 856
|
410
....*....|....*..
gi 62484206 712 QSQTVAELKQEISRLET 728
Cdd:TIGR00618 857 CSKQLAQLTQEQAKIIQ 873
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
360-730 |
2.54e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 44.65 E-value: 2.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 360 MKKMEKEYQDLKKKEQE---EMAELRR-LRRENCLLKQRNELLEAESAELADRLVRGQVS-RAEEEETSYAIQTELMQ-- 432
Cdd:TIGR00606 739 IDLKEKEIPELRNKLQKvnrDIQRLKNdIEEQETLLGTIMPEEESAKVCLTDVTIMERFQmELKDVERKIAQQAAKLQgs 818
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 433 -LRRSYLEVSHQLENANEEVRGLSLRLQENNVSIDSNNSR----QSSIDELCMKE----EALKQRDEMVScLLEELVKVR 503
Cdd:TIGR00606 819 dLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQiqhlKSKTNELKSEKlqigTNLQRRQQFEE-QLVELSTEV 897
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 504 QGLAESEDQIRNLKAKVEELEEDKKTLRE---TTPDNSVAHLQDELIASKLREAEASLSLKDLKQRVQELSSQWQRQLAE 580
Cdd:TIGR00606 898 QSLIREIKDAKEQDSPLETFLEKDQQEKEeliSSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKET 977
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 581 N------QRSESERTTNAVDSTpKKLLTNFFDSSKSSEhtqKLEEELMTTRIREmETLTELKELRLKVMEletqvQVSTN 654
Cdd:TIGR00606 978 ElntvnaQLEECEKHQEKINED-MRLMRQDIDTQKIQE---RWLQDNLTLRKRE-NELKEVEEELKQHLK-----EMGQM 1047
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 62484206 655 QLRRQDEEHKKLKEELEMAvtreKDMSNKAREQQHRYSDLESRMKDELMNVKIKFTEQSQTVAELKQEISRLETKN 730
Cdd:TIGR00606 1048 QVLQMKQEHQKLEENIDLI----KRNHVLALGRQKGYEKEIKHFKKELREPQFRDAEEKYREMMIVMRTTELVNKD 1119
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
348-727 |
2.86e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 44.24 E-value: 2.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 348 NLAYSIKLNTKRMKKMEKEYQDLKKKEQEEMAELRRLRREncLLKQRNELLEAESaeladrlvrgQVSRAEEEETSYaiQ 427
Cdd:TIGR04523 107 KINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTE--IKKKEKELEKLNN----------KYNDLKKQKEEL--E 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 428 TELMQLRRSYLEVSHQLENANEEVRGLSLRLQENNVSIDSNNSRQSSIDELcmkEEALKQRDEMVSCLLEELVKVRQGLA 507
Cdd:TIGR04523 173 NELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISEL---KKQNNQLKDNIEKKQQEINEKTTEIS 249
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 508 ESEDQIRNLK-----------AKVEELEEDKKTLRETTpdNSVAHLQDELiaSKLREAEASLSLKDLKQRVQelSSQWQR 576
Cdd:TIGR04523 250 NTQTQLNQLKdeqnkikkqlsEKQKELEQNNKKIKELE--KQLNQLKSEI--SDLNNQKEQDWNKELKSELK--NQEKKL 323
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 577 QLAENQRSESERTTNAVDSTPKKLLTNFFDS-SKSSEHTQKLEE---ELMTTRIREMETLTELKELRLKVMELETQVQVS 652
Cdd:TIGR04523 324 EEIQNQISQNNKIISQLNEQISQLKKELTNSeSENSEKQRELEEkqnEIEKLKKENQSYKQEIKNLESQINDLESKIQNQ 403
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 62484206 653 TNQLRRQDEEHKKLKEELEMAVTREKDMSNKAREQQHRYSDLEsrmkDELMNVKIKFTEQSQTVAELKQEISRLE 727
Cdd:TIGR04523 404 EKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLT----NQDSVKELIIKNLDNTRESLETQLKVLS 474
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
351-760 |
3.02e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 44.75 E-value: 3.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 351 YSIKLNTKRMKKMEKEYQDLKKKEQEEMAELRRLRRENCLLKQRNELLEAESAELADRLVRGQVSRAEEEETSYAIQTEL 430
Cdd:PTZ00121 1081 FDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKA 1160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 431 MQLRRsyLEVSHQLENAN--------EEVR-GLSLRLQENNVSIDSNNSRQS--SIDELCMKEEAlkQRDEMVSCLLEEL 499
Cdd:PTZ00121 1161 EDARK--AEEARKAEDAKkaeaarkaEEVRkAEELRKAEDARKAEAARKAEEerKAEEARKAEDA--KKAEAVKKAEEAK 1236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 500 VKVRQGLAESEDQIRNLKAKVEELEEDKKTLRETTPDNSVAHLQDEL-------IASKLREAEASLSLKDLKQRVQEL-S 571
Cdd:PTZ00121 1237 KDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELkkaeekkKADEAKKAEEKKKADEAKKKAEEAkK 1316
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 572 SQWQRQLAENQRSESERTTNAVDSTPKKLLTNFFDSSKSSEHTQKLEEELMTTRIREMETLTELKELRLKVMELEtqvqv 651
Cdd:PTZ00121 1317 ADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKK----- 1391
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 652 STNQLRRQDEEHKKLKEELEMAVTREKDMSNKAREQQHRYSDLESRMKDElmnvKIKFTEQSQTVAELKQEISRLETKNS 731
Cdd:PTZ00121 1392 KADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAE----EAKKADEAKKKAEEAKKAEEAKKKAE 1467
|
410 420
....*....|....*....|....*....
gi 62484206 732 EMLAEGELRANLDDSDKVRDLQDRLADMK 760
Cdd:PTZ00121 1468 EAKKADEAKKKAEEAKKADEAKKKAEEAK 1496
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
365-558 |
3.44e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.14 E-value: 3.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 365 KEYQDLKKKEQEEMAELRRLRRENclLKQRNELLEAESAELADRLVR--GQVSRAEEEETsyAIQTELMQLRRSYLEVSH 442
Cdd:COG4913 262 ERYAAARERLAELEYLRAALRLWF--AQRRLELLEAELEELRAELARleAELERLEARLD--ALREELDELEAQIRGNGG 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 443 Q-LENANEEVRGLSLRLQENNVSIDSNNSRQSSI--------DELcmkEEALKQRDEMVSCLLEELVKVRQGLAESEDQI 513
Cdd:COG4913 338 DrLEQLEREIERLERELEERERRRARLEALLAALglplpasaEEF---AALRAEAAALLEALEEELEALEEALAEAEAAL 414
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 62484206 514 RNLKAKVEELEEDKKTLReTTPDNSVAHLQD--ELIASKLREAEASL 558
Cdd:COG4913 415 RDLRRELRELEAEIASLE-RRKSNIPARLLAlrDALAEALGLDEAEL 460
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
481-762 |
4.11e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 44.16 E-value: 4.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 481 KEEALKQRDEMvsclleelvkvRQGLAESEDQIRNLKAKVEELEEDKKTLREttpdnsVAHLQDELiasKLREAE-ASLS 559
Cdd:COG1196 174 KEEAERKLEAT-----------EENLERLEDILGELERQLEPLERQAEKAER------YRELKEEL---KELEAElLLLK 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 560 LKDLKQRVQELSSQwqRQLAENQRSESERTTNAVDSTPKKLLTNFFDSSKSSEHTQKLEEELMTTRIREMETLT----EL 635
Cdd:COG1196 234 LRELEAELEELEAE--LEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIArleeRR 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 636 KELRLKVMELETQVQVSTNQLRRQDEEHKKLKEELEMAVTREKDMSNKAREQQHRYSDLESRMKDELMNVKIKFTEQSQT 715
Cdd:COG1196 312 RELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEA 391
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 62484206 716 VAELKQEISRLETKNSEMLAEGELRANLDDSDKVRDLQDRLADMKAE 762
Cdd:COG1196 392 LRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEE 438
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
495-739 |
4.15e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.89 E-value: 4.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 495 LLEELVKVRQGLAESEDQIRNLKAKVEELEEDKKTLRETTP--DNSVAHLQDELIASKLREAEASLSLKDLKQRVQELSS 572
Cdd:TIGR02168 237 LREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSelEEEIEELQKELYALANEISRLEQQKQILRERLANLER 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 573 QWQRQLAENQRSESERttnavdstpkklltnffdsskssehtQKLEEELMTTRIREMETLTELKELRLKVMELETQVQVS 652
Cdd:TIGR02168 317 QLEELEAQLEELESKL--------------------------DELAEELAELEEKLEELKEELESLEAELEELEAELEEL 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 653 TNQLRRQDEEHKKLKEEL-----EMAVTREKDMSNKAR--EQQHRYSDLESRMKDELMN-VKIKFTEQSQTVAELKQEIS 724
Cdd:TIGR02168 371 ESRLEELEEQLETLRSKVaqlelQIASLNNEIERLEARleRLEDRRERLQQEIEELLKKlEEAELKELQAELEELEEELE 450
|
250
....*....|....*
gi 62484206 725 RLETKNSEMLAEGEL 739
Cdd:TIGR02168 451 ELQEELERLEEALEE 465
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
324-753 |
4.73e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.95 E-value: 4.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 324 MEAMLKFFQKELPGRVEADVEGFFNLAYSIKLNTKRMKKMEKEYQDLKKKEQEemaelrrLRRENCLLKQRNELLEAESA 403
Cdd:pfam15921 431 LEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEE-------LTAKKMTLESSERTVSDLTA 503
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 404 ELADRLVRGQVSRAEEEETSYAIQTELMQLRRSYLEVSHqLENANEEVRGLSLRLQENNVSIDSNNSRQSSIDEL----- 478
Cdd:pfam15921 504 SLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDH-LRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLvgqhg 582
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 479 ----CMKEEALKQRDEMVSCLLEelVKVRQGLAESED-QIRNLKAKVEELEEDKKTLrettpdnsVAHLQDELIASKLRE 553
Cdd:pfam15921 583 rtagAMQVEKAQLEKEINDRRLE--LQEFKILKDKKDaKIRELEARVSDLELEKVKL--------VNAGSERLRAVKDIK 652
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 554 AEASLSLKDLKQRVQELSSQWQ-----RQLAENQRSESERTTNAVDSTPKKLLTNFFDSSKSSEHTQKLEEELMTTRIRE 628
Cdd:pfam15921 653 QERDQLLNEVKTSRNELNSLSEdyevlKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGM 732
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 629 METLT----ELKELRLKVMELETQVQVSTNQLRRQDEEHKKLKEELEMAVTREKDMSNKAREQQHRysdlESRMKDELMN 704
Cdd:pfam15921 733 QKQITakrgQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQ----ERRLKEKVAN 808
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 62484206 705 VKIKFTEQSQTVAELKQEISRLETKNsemlaegeLRANLDDSDKVRDLQ 753
Cdd:pfam15921 809 MEVALDKASLQFAECQDIIQRQEQES--------VRLKLQHTLDVKELQ 849
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
357-758 |
6.76e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.22 E-value: 6.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 357 TKRMKKMEKEYQDLKKKEQEEMAELRRLRRENCLLKQRNEL--LEAESAELADRLvrgqvsraeeeetsyaiqTELMQLR 434
Cdd:COG4717 94 QEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELeaLEAELAELPERL------------------EELEERL 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 435 RSYLEVSHQLENANEEVRGLSLRLQE--NNVSIDSNNSRQSSIDELCMKEEALKQRDEMVSCLLEELVKVRQGLAESEDQ 512
Cdd:COG4717 156 EELRELEEELEELEAELAELQEELEEllEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENE 235
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 513 IRNLKAKvEELEEDKKTLRETTPDNSVAHLQDELIASKLREAEASLSL---------------KDLKQRVQELSSQWQRQ 577
Cdd:COG4717 236 LEAAALE-ERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVlgllallflllarekASLGKEAEELQALPALE 314
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 578 LAENQRSESERTTNAVDSTPKKllTNFFDSSKSSEHTQKLEEElmttrIREMETLTELKELRLKVMELETQVQVST---- 653
Cdd:COG4717 315 ELEEEELEELLAALGLPPDLSP--EELLELLDRIEELQELLRE-----AEELEEELQLEELEQEIAALLAEAGVEDeeel 387
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 654 NQLRRQDEEHKKLKEELEmAVTREKDMSNKAREQQHRYSDLEsRMKDELMNVKIKFTEQSQTVAELKQEISRLETKNSEM 733
Cdd:COG4717 388 RAALEQAEEYQELKEELE-ELEEQLEELLGELEELLEALDEE-ELEEELEELEEELEELEEELEELREELAELEAELEQL 465
|
410 420
....*....|....*....|....*
gi 62484206 734 LAEGELRANLDDSDKVRDLQDRLAD 758
Cdd:COG4717 466 EEDGELAELLQELEELKAELRELAE 490
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
357-538 |
6.90e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.13 E-value: 6.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 357 TKRMKKMEKEYQDLKKKEQEEMAELRRLRREnclLKQRNELLEAESAELadrlvrgqvsraeeeetsYAIQTELMQLRRS 436
Cdd:TIGR02169 356 TEEYAELKEELEDLRAELEEVDKEFAETRDE---LKDYREKLEKLKREI------------------NELKRELDRLQEE 414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 437 YLEVSHQLENANEEVRGLSLRLQEnnvsidSNNSRQSSIDELCMKEEALKQRDEMVSCLLEELVKVRQGLAESEDQIRNL 516
Cdd:TIGR02169 415 LQRLSEELADLNAAIAGIEAKINE------LEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKL 488
|
170 180
....*....|....*....|..
gi 62484206 517 KAKVEELEEDKKTLRETTPDNS 538
Cdd:TIGR02169 489 QRELAEAEAQARASEERVRGGR 510
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
364-735 |
6.91e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.41 E-value: 6.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 364 EKEYQDLKKKEQEEMAELRRLRRENCLLKQRNELLEAESAELADRLVRGQVSRAEEEetsyaiqtelmqlrrsylevshQ 443
Cdd:PRK04863 292 RRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQE----------------------K 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 444 LENANEEVRGLSLRLQEnnvsidSNNSRQSSIDELCMKEEALKQRDEMVSCLLEELVKVRQGLAESEDQIRNLKAKVEEL 523
Cdd:PRK04863 350 IERYQADLEELEERLEE------QNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQAL 423
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 524 EEDKK--TLRETTPDNsVAHLQDELIAsklREAEASLSLKDLKQRVqelssqwqrQLAENQRSESERTTNAVDStpkklL 601
Cdd:PRK04863 424 ERAKQlcGLPDLTADN-AEDWLEEFQA---KEQEATEELLSLEQKL---------SVAQAAHSQFEQAYQLVRK-----I 485
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 602 TNFFDSSKSSEHTQKLEEELMTTRIRemetLTELKELRLKVMELETQVQVSTNQLRRQDEEHKKLKEELEmavtREKDMS 681
Cdd:PRK04863 486 AGEVSRSEAWDVARELLRRLREQRHL----AEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLD----DEDELE 557
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 62484206 682 NKAREQQHRYSDLEsrmkDELMNVKIKFTEQSQTVAELKQEISRLETKNSEMLA 735
Cdd:PRK04863 558 QLQEELEARLESLS----ESVSEARERRMALRQQLEQLQARIQRLAARAPAWLA 607
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
358-732 |
8.56e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 42.97 E-value: 8.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 358 KRMKKMEKEYQDLKKKEQEEMAELRRLRRENCLLKQRNELLEAESAELADRLVRGQVsraeeeeTSYAIQTELMQLRRSY 437
Cdd:PRK01156 346 SRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEI-------DPDAIKKELNEINVKL 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 438 LEVSHQLENANEEVRglSLRLQENNVSIDSNNSRQSSIDELC-------MKEEALKQRDEMVSCLLEELVKVRQGLAESE 510
Cdd:PRK01156 419 QDISSKVSSLNQRIR--ALRENLDELSRNMEMLNGQSVCPVCgttlgeeKSNHIINHYNEKKSRLEEKIREIEIEVKDID 496
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 511 DQIRNLKaKVEELEEDKKTLRETTPDNSVAHLQDELIASKLREAEaslsLKDLKQRVQELSSQWQRQLAENQRSESERTT 590
Cdd:PRK01156 497 EKIVDLK-KRKEYLESEEINKSINEYNKIESARADLEDIKIKINE----LKDKHDKYEEIKNRYKSLKLEDLDSKRTSWL 571
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 591 NA---VDSTPKKLLTNFFDSSKSS-----EHTQKLEEEL------MTTRIREMEtlTELKELRLKVMELEtQVQVSTNQL 656
Cdd:PRK01156 572 NAlavISLIDIETNRSRSNEIKKQlndleSRLQEIEIGFpddksyIDKSIREIE--NEANNLNNKYNEIQ-ENKILIEKL 648
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 62484206 657 RRQDEEHKKLKEELEMAVTREKDMSNKAREQQHRYSDLESRMKDELMNVkikfTEQSQTVAELKQEISRLETKNSE 732
Cdd:PRK01156 649 RGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANR----ARLESTIEILRTRINELSDRIND 720
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
368-762 |
8.57e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.21 E-value: 8.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 368 QDLKKKEQEEMAELRRlRRENclLKQRNELLEAESAELADRLVRGQVSRAEEEETSYAIQTELMQLRRSYLEVS------ 441
Cdd:PTZ00121 1191 EELRKAEDARKAEAAR-KAEE--ERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARmahfar 1267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 442 -HQLENANEEVRGLSLRLQENNVSIDS--NNSRQSSIDELCMKEEALKQRDEMVSCLLEELVKVRQGLAESEDQIRNLKA 518
Cdd:PTZ00121 1268 rQAAIKAEEARKADELKKAEEKKKADEakKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEA 1347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 519 KVEELEEDKKTLRETtpdnsvahlQDELIASKLREAEASLSLKDLKQRVQElssqwqRQLAENQRSESERTTNAVDSTPK 598
Cdd:PTZ00121 1348 AKAEAEAAADEAEAA---------EEKAEAAEKKKEEAKKKADAAKKKAEE------KKKADEAKKKAEEDKKKADELKK 1412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 599 KLltnffDSSKSSEHTQKLEEElmttrIREMETLTELKELRLKVMELETQVQVS--TNQLRRQDEEHKKLKEELEMAVTR 676
Cdd:PTZ00121 1413 AA-----AAKKKADEAKKKAEE-----KKKADEAKKKAEEAKKADEAKKKAEEAkkAEEAKKKAEEAKKADEAKKKAEEA 1482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 677 EK--DMSNKAREQQHRYSDLESRMKDELMNVKIKFTEQSQTVAELKQEisrLETKNSEMLAEGELRANLDDSDKVRDLQD 754
Cdd:PTZ00121 1483 KKadEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKA---EEAKKADEAKKAEEKKKADELKKAEELKK 1559
|
....*...
gi 62484206 755 RLADMKAE 762
Cdd:PTZ00121 1560 AEEKKKAE 1567
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
359-723 |
1.54e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 42.13 E-value: 1.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 359 RMKKMEKEYQDLKKKEQEEMAELR-RLRRENCLLKQRNELLEAESAELADRLVRGQVSRAEEEETSYAIQTELMQLRRSY 437
Cdd:pfam12128 284 TSAELNQLLRTLDDQWKEKRDELNgELSAADAAVAKDRSELEALEDQHGAFLDADIETAAADQEQLPSWQSELENLEERL 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 438 --LEVSHQLENANEEVRgLSLRLQENNVSIDSNNSRQSSIDE-----LCMKEEALKQ-----RDEMVSCLLE-------- 497
Cdd:pfam12128 364 kaLTGKHQDVTAKYNRR-RSKIKEQNNRDIAGIKDKLAKIREardrqLAVAEDDLQAleselREQLEAGKLEfneeeyrl 442
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 498 ----ELVKVRQGLAE-SEDQIRNLKAKVEELEEDKKTLRETTpdNSVAHLQDELIASKLREAEASLSLKDLKQRVQELSS 572
Cdd:pfam12128 443 ksrlGELKLRLNQATaTPELLLQLENFDERIERAREEQEAAN--AEVERLQSELRQARKRRDQASEALRQASRRLEERQS 520
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 573 Q-------------------------WQRQLAENQRSESERTTN----AVDSTPKKLLTNF--------FDSSKSSEHTQ 615
Cdd:pfam12128 521 AldelelqlfpqagtllhflrkeapdWEQSIGKVISPELLHRTDldpeVWDGSVGGELNLYgvkldlkrIDVPEWAASEE 600
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 616 -------KLEEELMTTRIREMETLTELKELRLKVMELE-------TQVQVSTNQLRRQDEEHKKLKEELEMAVTREKDMS 681
Cdd:pfam12128 601 elrerldKAEEALQSAREKQAAAEEQLVQANGELEKASreetfarTALKNARLDLRRLFDEKQSEKDKKNKALAERKDSA 680
|
410 420 430 440
....*....|....*....|....*....|....*....|...
gi 62484206 682 NKAREQ-QHRYSDLESRMKDELMNVKIKFTEQSQTVAELKQEI 723
Cdd:pfam12128 681 NERLNSlEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVV 723
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
498-702 |
2.26e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.97 E-value: 2.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 498 ELVKVRQGLAESEDQIRNLKAKVEELEEDKKTLREttpdnSVAHLQDELIASKLREAEASLSLKDLKQRVQELSSQWQRQ 577
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNE-----EYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGER 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 578 LAENQRSESerTTNAVD-----STPKKLLTNFFDSSKSSEHTQKLeeelmttriremetLTELKELRLKVMELETQVQVS 652
Cdd:COG3883 92 ARALYRSGG--SVSYLDvllgsESFSDFLDRLSALSKIADADADL--------------LEELKADKAELEAKKAELEAK 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 62484206 653 TNQLRRQDEEHKKLKEELEMAVTREKDMSNKAREQQHRYSDLESRMKDEL 702
Cdd:COG3883 156 LAELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAEL 205
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
358-760 |
2.30e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 41.64 E-value: 2.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 358 KRMkkMEKEYQDLKKKEQEEMAELRRLRRENCLLKQRNELLEAESAELADRLVRGQVSRAEEEETSYAIQTELMQLRRSY 437
Cdd:pfam15921 337 KRM--YEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITI 414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 438 LEVSHQLENANEEVRGLSLRLQENNVSIDSNNSRQ--------SSIDELCMKEEALKQRDEMVSCLLEELVKVRQGLAES 509
Cdd:pfam15921 415 DHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQmaaiqgknESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESS 494
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 510 EDQIRNLKAKVEELEE-------DKKTLRE------------TTPDNSVAHLQDELIASKLREAEASLSLKDLKQRVQ-- 568
Cdd:pfam15921 495 ERTVSDLTASLQEKERaieatnaEITKLRSrvdlklqelqhlKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIEnm 574
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 569 -ELSSQWQRQ----LAENQRSESERTTNAVDSTPKKLLTNFFDSSKSSEHTQKLEEELMTTRIREM--ETLTELKELRLK 641
Cdd:pfam15921 575 tQLVGQHGRTagamQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAgsERLRAVKDIKQE 654
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 642 VMELETQVQVSTNQLRRQDEEHKKLK-------EELEMAVTREK-DMSNKAREQQHRYSDLES----------------- 696
Cdd:pfam15921 655 RDQLLNEVKTSRNELNSLSEDYEVLKrnfrnksEEMETTTNKLKmQLKSAQSELEQTRNTLKSmegsdghamkvamgmqk 734
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 697 -----RMKDELMNVKIKFTEQSQTVA------------ELKQEISRLETKNSEMLAEGE-LRAnlddsdKVRDLQDRLAD 758
Cdd:pfam15921 735 qitakRGQIDALQSKIQFLEEAMTNAnkekhflkeeknKLSQELSTVATEKNKMAGELEvLRS------QERRLKEKVAN 808
|
..
gi 62484206 759 MK 760
Cdd:pfam15921 809 ME 810
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
472-694 |
2.40e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 41.15 E-value: 2.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 472 QSSIDELCMKEEALKQRDEMVSCLLEELVKVrqglaeSEDQIRNLKAKVEELEEDKKTLRettpdNSVAHLQDELIASKL 551
Cdd:PHA02562 180 NQQIQTLDMKIDHIQQQIKTYNKNIEEQRKK------NGENIARKQNKYDELVEEAKTIK-----AEIEELTDELLNLVM 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 552 REAEASLSLKDLKQRVQELSSQWQRQLAENQRSESERT----TNAVDSTPKKLLTNffdSSKSSEHTQKLeEELMTTRIR 627
Cdd:PHA02562 249 DIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVcptcTQQISEGPDRITKI---KDKLKELQHSL-EKLDTAIDE 324
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 62484206 628 EMETLTELKELRLKVMELETQVQVSTNQLRRQDEEHKKLKEELEMAVTREKDMSNKAREQQHRYSDL 694
Cdd:PHA02562 325 LEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKI 391
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
354-736 |
2.43e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 41.35 E-value: 2.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 354 KLNTKRMK-KMEKEYQDLKKKEQEEMA---ELRRLRRENC-------LLK-------QRNELLEAESAELADRLVRG--- 412
Cdd:pfam10174 281 KSHSKFMKnKIDQLKQELSKKESELLAlqtKLETLTNQNSdckqhieVLKesltakeQRAAILQTEVDALRLRLEEKesf 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 413 ------QVSRAEEEETSYAIQTELMQ------------LRRSYLEVSHQLENANEEVRGLSLRLQEnnVSIDSNNSRQSs 474
Cdd:pfam10174 361 lnkktkQLQDLTEEKSTLAGEIRDLKdmldvkerkinvLQKKIENLQEQLRDKDKQLAGLKERVKS--LQTDSSNTDTA- 437
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 475 ideLCMKEEALKQRDEMVSCL-----------LEELVKVRQGLAESEDQIRNLKAKVEELEEDKKTLRETTPDNSVAHLQ 543
Cdd:pfam10174 438 ---LTTLEEALSEKERIIERLkeqreredrerLEELESLKKENKDLKEKVSALQPELTEKESSLIDLKEHASSLASSGLK 514
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 544 DEliaSKLREAEASlslkdLKQRVQElSSQWQRQLAENQRSESERTTNAVDSTPKKLLTNFFDSSKSSEHTQKLEEELMT 623
Cdd:pfam10174 515 KD---SKLKSLEIA-----VEQKKEE-CSKLENQLKKAHNAEEAVRTNPEINDRIRLLEQEVARYKEESGKAQAEVERLL 585
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 624 TRIREMETLTELKELRLKVMELETQVQV------STNQLRRQDEEHKKLKEELEMAVTREKDMSNKAREQQ-HRYSDLES 696
Cdd:pfam10174 586 GILREVENEKNDKDKKIAELESLTLRQMkeqnkkVANIKHGQQEMKKKGAQLLEEARRREDNLADNSQQLQlEELMGALE 665
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 62484206 697 RMKDELMNVKIKFTEQSQTVAELKQEISRLETKNSEMLAE 736
Cdd:pfam10174 666 KTRQELDATKARLSSTQQSLAEKDGHLTNLRAERRKQLEE 705
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
379-743 |
3.07e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 41.03 E-value: 3.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 379 AELRRLRRENCLlKQRNELLEAESAELADRlvrgQVSRAEEEETSYAIQTELMQLRRSYLEVSHQLENANEEVRGLSLRL 458
Cdd:pfam07888 29 AELLQNRLEECL-QERAELLQAQEAANRQR----EKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKY 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 459 QENNVSIDSNNSRQSSI-DELCMKEEALKQRDEMVSCLLEELVKVRQGLAESEDQIRNLKAKVEELEEDKKTLrETTPDN 537
Cdd:pfam07888 104 KELSASSEELSEEKDALlAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQL-QAKLQQ 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 538 SVAHLQDelIASKLREAEASLSLKDLK-QRVQELSSQWQRQLAENQRSESErttnavDSTPKKLLTNFFDSSKSSEHT-Q 615
Cdd:pfam07888 183 TEEELRS--LSKEFQELRNSLAQRDTQvLQLQDTITTLTQKLTTAHRKEAE------NEALLEELRSLQERLNASERKvE 254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 616 KLEEELMTTRIREMETLTELKELRLKVMELETQVQVSTNQLRRQDEEHKKLKEELEMAVTREKDMSNKAREQQHRysdLE 695
Cdd:pfam07888 255 GLGEELSSMAAQRDRTQAELHQARLQAAQLTLQLADASLALREGRARWAQERETLQQSAEADKDRIEKLSAELQR---LE 331
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 62484206 696 SRMKDELMnvkikftEQSQTVAELKQEISRLETKNSEMLAE-GELRANL 743
Cdd:pfam07888 332 ERLQEERM-------EREKLEVELGREKDCNRVQLSESRRElQELKASL 373
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
353-547 |
3.39e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.52 E-value: 3.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 353 IKLNTKRMKKMEKEYQDLKKKEQEEMAELRRLRRENCLLKQRNE---LLEAESAELADRLVR--GQVSRAEEEETSY--A 425
Cdd:COG4942 78 LAALEAELAELEKEIAELRAELEAQKEELAELLRALYRLGRQPPlalLLSPEDFLDAVRRLQylKYLAPARREQAEElrA 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 426 IQTELMQLRRSYLEVSHQLENANEEVRGLSLRLqennvsidsnnsrqssidelcmkEEALKQRDEMVSCLLEELVKVRQG 505
Cdd:COG4942 158 DLAELAALRAELEAERAELEALLAELEEERAAL-----------------------EALKAERQKLLARLEKELAELAAE 214
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 62484206 506 LAESEDQIRNLKAKVEELEEDKKTLRETTPDNSVAHLQDELI 547
Cdd:COG4942 215 LAELQQEAEELEALIARLEAEAAAAAERTPAAGFAALKGKLP 256
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
496-728 |
3.54e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 41.11 E-value: 3.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 496 LEELVKVRQGLAESEDQIRNLKAKVEELEEDKKTLRETTPD------NSVAHLQDEL--IASKLREAEASLSLKDLKQRV 567
Cdd:TIGR00618 172 LFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCmpdtyhERKQVLEKELkhLREALQQTQQSHAYLTQKREA 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 568 QELSSQWQRQL---------AENQRSESERTTNAVDSTPKKLltNFFDSSKSSEHTQKLEEELMTTRIREMETLTELKEL 638
Cdd:TIGR00618 252 QEEQLKKQQLLkqlrarieeLRAQEAVLEETQERINRARKAA--PLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMK 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 639 RLKVM----------ELETQVQVSTNQLRRQDEEHKKLKEELEMAVTREKDMSNKAREQQH--RYSDLESRMKDELMNVK 706
Cdd:TIGR00618 330 RAAHVkqqssieeqrRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTltQKLQSLCKELDILQREQ 409
|
250 260
....*....|....*....|..
gi 62484206 707 IKFTEQSQTVAELKQEISRLET 728
Cdd:TIGR00618 410 ATIDTRTSAFRDLQGQLAHAKK 431
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
359-736 |
4.32e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 40.54 E-value: 4.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 359 RMKKMEKEYQDLKKKEQEEMAELRRLRRENCLLKQRNELLEAESAELADRLVRGQVSRAEEEETSYAIQTELMQLRRSYL 438
Cdd:pfam01576 195 RLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQIS 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 439 EVSHQLEN-------ANEEVRGLSLRLQ----ENNVSIDSNNSRQS----SIDELCMKEEALKQRDEMVSCLLEEL-VKV 502
Cdd:pfam01576 275 ELQEDLESeraarnkAEKQRRDLGEELEalktELEDTLDTTAAQQElrskREQEVTELKKALEEETRSHEAQLQEMrQKH 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 503 RQGLAESEDQIRNLKAKVEELEEDKKTLrettpDNSVAHLQDELIASKLREAEASLSLKDLKQRVQELS---SQWQRQLA 579
Cdd:pfam01576 355 TQALEELTEQLEQAKRNKANLEKAKQAL-----ESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQarlSESERQRA 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 580 ENQ------RSESERTTNAVDSTPKKLLTNFFDSSKSSEHTQKLEEEL---------MTTRIREMET-----LTELKELR 639
Cdd:pfam01576 430 ELAeklsklQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLqeetrqklnLSTRLRQLEDernslQEQLEEEE 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 640 LKVMELETQVQVSTNQL----RRQDEE----------HKKLKEELEMAVTREKDMSnkarEQQHRYSDLESRMKDELMNV 705
Cdd:pfam01576 510 EAKRNVERQLSTLQAQLsdmkKKLEEDagtlealeegKKRLQRELEALTQQLEEKA----AAYDKLEKTKNRLQQELDDL 585
|
410 420 430
....*....|....*....|....*....|.
gi 62484206 706 KIKFTEQSQTVAELKQEisrlETKNSEMLAE 736
Cdd:pfam01576 586 LVDLDHQRQLVSNLEKK----QKKFDQMLAE 612
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
544-763 |
4.41e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 40.38 E-value: 4.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 544 DELIASKLREAEASLSLKDLKQRVQELSSQWQRQLAENQRSEserttNAVDSTPKKlltNFFDSSKSSEHTQKLEEELMT 623
Cdd:PHA02562 169 DKLNKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKK-----NGENIARKQ---NKYDELVEEAKTIKAEIEELT 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 624 TRI----REMETLTE-LKELRLKVMELETQVQvstnQLRRQDEEHKK------LKEELEMAVTREKDMSNKAREQQHRYS 692
Cdd:PHA02562 241 DELlnlvMDIEDPSAaLNKLNTAAAKIKSKIE----QFQKVIKMYEKggvcptCTQQISEGPDRITKIKDKLKELQHSLE 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 693 DLESRMkDELMNVKIKFTEQSQTVAEL-------KQEISRLETKNSEMLAE-GELRA-NLDDSDKVRDLQDRLADMKAEY 763
Cdd:PHA02562 317 KLDTAI-DELEEIMDEFNEQSKKLLELknkistnKQSLITLVDKAKKVKAAiEELQAeFVDNAEELAKLQDELDKIVKTK 395
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
361-754 |
4.95e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 40.54 E-value: 4.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 361 KKMEKEYQDLKKKEQEEMAELRRLRRENC--------------LLKQRNELLEAESAELADRLVRGQVSRAEEEETSYAI 426
Cdd:pfam01576 99 KKMQQHIQDLEEQLDEEEAARQKLQLEKVtteakikkleedilLLEDQNSKLSKERKLLEERISEFTSNLAEEEEKAKSL 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 427 Q----------TELMQLRRSYLEVSHQLENANEEVRGLSLRLQENNVSIdsnnsrQSSIDELCMKeeaLKQRDEMVSCLL 496
Cdd:pfam01576 179 SklknkheamiSDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAEL------QAQIAELRAQ---LAKKEEELQAAL 249
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 497 EELVKVRQGLAESEDQIRNLKAKVEELEEDKKTLR--ETTPDNSVAHLQDELIASKlREAEASLslkDLKQRVQELSSQW 574
Cdd:pfam01576 250 ARLEEETAQKNNALKKIRELEAQISELQEDLESERaaRNKAEKQRRDLGEELEALK-TELEDTL---DTTAAQQELRSKR 325
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 575 QRQLAENQRSESERTTNAVDSTpkklltnffdSSKSSEHTQKLEE--ELMTTRIREMETLTELKElRLKVMELETQVQVS 652
Cdd:pfam01576 326 EQEVTELKKALEEETRSHEAQL----------QEMRQKHTQALEEltEQLEQAKRNKANLEKAKQ-ALESENAELQAELR 394
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 653 TNQLRRQDEEHKKLKEELEMAVTREKdmSNKAREQQHRYSDLESRMKDELMNVKIKFTEQSQTVAELKQEISRLETK--N 730
Cdd:pfam01576 395 TLQQAKQDSEHKRKKLEGQLQELQAR--LSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQlqD 472
|
410 420
....*....|....*....|....
gi 62484206 731 SEMLAEGELRANLDDSDKVRDLQD 754
Cdd:pfam01576 473 TQELLQEETRQKLNLSTRLRQLED 496
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
482-757 |
5.00e-03 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 40.33 E-value: 5.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 482 EEALKQRDEMVSCLLEELVKVRQGLAES----EDQIRNLKAKVEELEEDKKTLRETTPDNSVAHLQDEL--IASKLREAE 555
Cdd:COG5185 256 EKLVEQNTDLRLEKLGENAESSKRLNENannlIKQFENTKEKIAEYTKSIDIKKATESLEEQLAAAEAEqeLEESKRETE 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 556 ASLslkdlkQRVQELSSQWQRQLAENQRSESERTTNAVDSTpkklltnffDSSKSSEHTQKLEEELMTTRiremetltel 635
Cdd:COG5185 336 TGI------QNLTAEIEQGQESLTENLEAIKEEIENIVGEV---------ELSKSSEELDSFKDTIESTK---------- 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 636 KELRLKVMELETQVQVSTNQLRR----QDEEHKKLKEELEMAVTREKDMSNKAREQQHRYSDLESRMKDELMN-----VK 706
Cdd:COG5185 391 ESLDEIPQNQRGYAQEILATLEDtlkaADRQIEELQRQIEQATSSNEEVSKLLNELISELNKVMREADEESQSrleeaYD 470
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 62484206 707 IKFTEQSQTVAELKQEISRLETKNSEMLAEGE-LRANLDDS-DKVRDLQDRLA 757
Cdd:COG5185 471 EINRSVRSKKEDLNEELTQIESRVSTLKATLEkLRAKLERQlEGVRSKLDQVA 523
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
375-573 |
6.09e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.28 E-value: 6.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 375 QEEMAELRRLRRENCLLKQRNELLE--AESAELADRLvRGQVSRAEEEET---SYAIQTELMQLRRSYLEVSHQLENANE 449
Cdd:COG4913 231 VEHFDDLERAHEALEDAREQIELLEpiRELAERYAAA-RERLAELEYLRAalrLWFAQRRLELLEAELEELRAELARLEA 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 450 EVRGLSLRLQENNVSIDS--NNSRQSSIDELcmkeEALKQRDEMvscLLEELVKVRQGLAESEDQIRNLKAKVEELEEDK 527
Cdd:COG4913 310 ELERLEARLDALREELDEleAQIRGNGGDRL----EQLEREIER---LERELEERERRRARLEALLAALGLPLPASAEEF 382
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 62484206 528 KTLRETTPDnSVAHLQDELIASKLREAEASLSLKDLKQRVQELSSQ 573
Cdd:COG4913 383 AALRAEAAA-LLEALEEELEALEEALAEAEAALRDLRRELRELEAE 427
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
353-760 |
6.62e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 40.09 E-value: 6.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 353 IKLNTKRMKKMEKEYQDLKK---KEQEEMAELRRLRRENCLLKQRNELLEAESAEL--ADRLVRGQVSRAEEEETSYAIQ 427
Cdd:pfam05483 379 LKIITMELQKKSSELEEMTKfknNKEVELEELKKILAEDEKLLDEKKQFEKIAEELkgKEQELIFLLQAREKEIHDLEIQ 458
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 428 TELMQLRRSYL-----EVSHQLENanEEVRGLSLRLQENNVSIDSNNSRQSSIDelcMKEEALKQRDEMVSCLLEE--LV 500
Cdd:pfam05483 459 LTAIKTSEEHYlkeveDLKTELEK--EKLKNIELTAHCDKLLLENKELTQEASD---MTLELKKHQEDIINCKKQEerML 533
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 501 KVRQGLAESEDQIRNlkakveELEEDKKTLRETTPDNSVAHLQDEliaSKLREAEASLSLKDLKQRVQELSSQWQRQLAE 580
Cdd:pfam05483 534 KQIENLEEKEMNLRD------ELESVREEFIQKGDEVKCKLDKSE---ENARSIEYEVLKKEKQMKILENKCNNLKKQIE 604
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 581 NQRSESERTTNAVDSTPKKLLTNFFDSSKSSEHTQKLEEELMTTRIREME-TLTELKELRLKVMELETQVQvSTNQLRRQ 659
Cdd:pfam05483 605 NKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEiIDNYQKEIEDKKISEEKLLE-EVEKAKAI 683
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 660 DEEHKKLKEELEMAVTRE-KDMSNKAREQQHRYSDLESRMKDELMNVKIKFTEQSQTVAELKQEISRLetKNSEMLAEGE 738
Cdd:pfam05483 684 ADEAVKLQKEIDKRCQHKiAEMVALMEKHKHQYDKIIEERDSELGLYKNKEQEQSSAKAALEIELSNI--KAELLSLKKQ 761
|
410 420
....*....|....*....|...
gi 62484206 739 LRANLDDSDKV-RDLQDRLADMK 760
Cdd:pfam05483 762 LEIEKEEKEKLkMEAKENTAILK 784
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
489-695 |
6.70e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 40.00 E-value: 6.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 489 DEMVSCLLEELVKVRQGLAES-----EDQIRNLKAKVEELEEDKKTLRETTPDNSVAhLQDELIASKLREAEASLSlkDL 563
Cdd:COG3206 155 NALAEAYLEQNLELRREEARKaleflEEQLPELRKELEEAEAALEEFRQKNGLVDLS-EEAKLLLQQLSELESQLA--EA 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 564 KQRVQELSSQW---QRQLAENQRSESERTTNAVdstpkklltnffdsskssehTQKLEEELMTTRIREMETLTELKELRL 640
Cdd:COG3206 232 RAELAEAEARLaalRAQLGSGPDALPELLQSPV--------------------IQQLRAQLAELEAELAELSARYTPNHP 291
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 62484206 641 KVMELETQVQVSTNQLRRQDEE-HKKLKEELEMAVTREKDMSNKAREQQHR----------YSDLE 695
Cdd:COG3206 292 DVIALRAQIAALRAQLQQEAQRiLASLEAELEALQAREASLQAQLAQLEARlaelpeleaeLRRLE 357
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
469-769 |
7.73e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 39.72 E-value: 7.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 469 NSRQSSIDELCMKEEALKQ-RDEMVSCL-----LEELVKVRQGLAESEDQIRNLKAKVE-ELEEDKKTLRETTPDNSVAH 541
Cdd:pfam17380 285 SERQQQEKFEKMEQERLRQeKEEKAREVerrrkLEEAEKARQAEMDRQAAIYAEQERMAmERERELERIRQEERKRELER 364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 542 LQDELIA---SKLREAEA-SLSLKDLKQRV-QELSSQWQRQLAENQRSESERTTNAVDSTPKKLLTNffdssKSSEHTQK 616
Cdd:pfam17380 365 IRQEEIAmeiSRMRELERlQMERQQKNERVrQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEE-----ARQREVRR 439
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 617 LEEElmttRIREMEtltelkelRLKVMELETQVQVstnQLRRQDEEHKKlKEELEMavtrEKDMSNKAREQQHRYSDLES 696
Cdd:pfam17380 440 LEEE----RAREME--------RVRLEEQERQQQV---ERLRQQEEERK-RKKLEL----EKEKRDRKRAEEQRRKILEK 499
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 697 RMKDELMNV------------------KIKFTEQSQTVAE----LKQEISRLETKNSEMLAEGELRANLDDSDKVRDLQD 754
Cdd:pfam17380 500 ELEERKQAMieeerkrkllekemeerqKAIYEEERRREAEeerrKQQEMEERRRIQEQMRKATEERSRLEAMEREREMMR 579
|
330 340
....*....|....*....|
gi 62484206 755 RLAD---MKAEYP--TPITS 769
Cdd:pfam17380 580 QIVEsekARAEYEatTPITT 599
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
364-695 |
7.96e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 39.94 E-value: 7.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 364 EKEYQDLKKKEQEEMAELRRLRRENCLLKQRNELLEAESAELADRLVRGQVS-RAEEEETSYaiQTELmqlrrsyLEVSH 442
Cdd:COG3096 291 RRELFGARRQLAEEQYRLVEMARELEELSARESDLEQDYQAASDHLNLVQTAlRQQEKIERY--QEDL-------EELTE 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 443 QLENANEEVRGLSLRLQENnvsidsnnsrqssidelcmkEEALKQRDEMVSCLLEELVKVRQGLaeSEDQIRNLKAK--V 520
Cdd:COG3096 362 RLEEQEEVVEEAAEQLAEA--------------------EARLEAAEEEVDSLKSQLADYQQAL--DVQQTRAIQYQqaV 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 521 EELEEDKKTLREttPDNSVAHLQDELIASKLREAEASLSLKDLKQRV---QELSSQWQRQLAENQRSESERTTNAVDSTP 597
Cdd:COG3096 420 QALEKARALCGL--PDLTPENAEDYLAAFRAKEQQATEEVLELEQKLsvaDAARRQFEKAYELVCKIAGEVERSQAWQTA 497
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 598 KKLLTNFFDSSKSSEHTQKLEEELmttriREMETLTELKElrlKVMELETQVQVSTNQLRRQDEEHKKLKEELEmavTRE 677
Cdd:COG3096 498 RELLRRYRSQQALAQRLQQLRAQL-----AELEQRLRQQQ---NAERLLEEFCQRIGQQLDAAEELEELLAELE---AQL 566
|
330
....*....|....*...
gi 62484206 678 KDMSNKAREQQHRYSDLE 695
Cdd:COG3096 567 EELEEQAAEAVEQRSELR 584
|
|
| HAP1_N |
pfam04849 |
HAP1 N-terminal conserved region; This family represents an N-terminal conserved region found ... |
355-569 |
8.46e-03 |
|
HAP1 N-terminal conserved region; This family represents an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologs. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntington's disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34.
Pssm-ID: 461455 [Multi-domain] Cd Length: 309 Bit Score: 39.24 E-value: 8.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 355 LNTKRMKKMEKEYQDLKK-----KEQEEMAEL-----RRLRRENCLLKQRNELLEAESAELADRLVRGQ----------- 413
Cdd:pfam04849 53 LCSDRVSQMTKTYNDIEAvtrllEEKERDLELaarigQSLLKQNSVLTERNEALEEQLGSAREEILQLRhelskkddllq 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 414 -VSRAEEEETSYAIQTELMQLRRSYLEVSH--QLENANEEVRGlslrLQENNVSIDSNNSR-QSSIDELCMKE------- 482
Cdd:pfam04849 133 iYSNDAEESETESSCSTPLRRNESFSSLHGcvQLDALQEKLRG----LEEENLKLRSEASHlKTETDTYEEKEqqlmsdc 208
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 483 -EALKQRDEMVSCLLEELVKVRQGLAESEDQIRNLKAKVEELEEDKKTLRETTPDnsvahLQDELIASKLREAEASLSLK 561
Cdd:pfam04849 209 vEQLSEANQQMAELSEELARKMEENLRQQEEITSLLAQIVDLQHKCKELGIENEE-----LQQHLQASKEAQRQLTSELQ 283
|
....*...
gi 62484206 562 DLKQRVQE 569
Cdd:pfam04849 284 ELQDRYAE 291
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
346-762 |
8.76e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 39.64 E-value: 8.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 346 FFNLAYSIKLNTKRMKKMEKEYQDLKKKEQEEMAELRRLRREncLLKQRNELLEAESAELADRLVRGQVSRAEEEETSYA 425
Cdd:TIGR00606 579 LHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQ--LSSYEDKLFDVCGSQDEESDLERLKEEIEKSSKQRA 656
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 426 IQTELMQLRRSYLEvshQLENANEEV-----RGLSLRLQENNVSIDSNNSRQSSIDELCMKEEAL----KQRDEMVScll 496
Cdd:TIGR00606 657 MLAGATAVYSQFIT---QLTDENQSCcpvcqRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELkkkeKRRDEMLG--- 730
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 497 eeLVKVRQG-LAESEDQIRNLKAKVEELEEDKKTLRETTPDNSVahlQDELIASKLREAEASLS----LKDLKQRVQELS 571
Cdd:TIGR00606 731 --LAPGRQSiIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQET---LLGTIMPEEESAKVCLTdvtiMERFQMELKDVE 805
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 572 SQWQRQLAENQRSESERTTNAVDSTPKKLLTNFFDSSKSSEHTQKLEEELMTTRIREMETLTELKELRLKV--------- 642
Cdd:TIGR00606 806 RKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIgtnlqrrqq 885
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 643 -----MELETQVQVSTNQLRRQDEEHKKLKEELEMAVTREKDMSNKAREQQHRYSDLESRMKDELMNV------------ 705
Cdd:TIGR00606 886 feeqlVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIhgymkdienkiq 965
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 62484206 706 -------KIKFTEQSQTVAELKQEISRLETKNSEMlaeGELRANLDDSD-KVRDLQDRLADMKAE 762
Cdd:TIGR00606 966 dgkddylKQKETELNTVNAQLEECEKHQEKINEDM---RLMRQDIDTQKiQERWLQDNLTLRKRE 1027
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
339-533 |
9.62e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 39.65 E-value: 9.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 339 VEADVEGFFNlaySIKLNTKRMKKMEKEYQDLKKKEQEEMAELRRLRRENCLLKQRNELLEAESAELADRLVRGQVSRAE 418
Cdd:TIGR02168 787 LEAQIEQLKE---ELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEE 863
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484206 419 EEETSYAIQTEL--------------MQLRRSYLEVSHQLENANEEVRGL--------------SLRLQENNVSIDSNNS 470
Cdd:TIGR02168 864 LEELIEELESELeallnerasleealALLRSELEELSEELRELESKRSELrreleelreklaqlELRLEGLEVRIDNLQE 943
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 62484206 471 RQSS--IDELCMKEEALKQRDEMVSCLLEELVKVRQGLAE-------SEDQIRNLK-------AKVEELEEDKKTLRET 533
Cdd:TIGR02168 944 RLSEeySLTLEEAEALENKIEDDEEEARRRLKRLENKIKElgpvnlaAIEEYEELKerydfltAQKEDLTEAKETLEEA 1022
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