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Conserved domains on  [gi|19172951|ref|NP_579883|]
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p6 [Human immunodeficiency virus 1]

Protein Classification

gag protein p6( domain architecture ID 10554889)

gag protein p6 contains two late-budding domains (L domains) which are short sequence motifs essential for viral particle release

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Gag_p6 pfam08705
Gag protein p6; HIV protein p6 contains two late-budding domains (L domains) which are short ...
 1-38 1.58e-10

Gag protein p6; HIV protein p6 contains two late-budding domains (L domains) which are short sequence motifs essential for viral particle release. p6 interacts with the endosomal sorting complex and represents a docking site for several cellular and binding factors. The PTAP motif interacts with the cellular budding factor TSG101. This domain is also found in some chimpanzee immunodeficiency virus (SIV-cpz) proteins.


:

Pssm-ID: 312289  Cd Length: 37  Bit Score: 49.53  E-value: 1.58e-10
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 19172951    1 LQSRPEPTAPPEESFRSGvETTTPPQKQEPIDKELYPL 38
Cdd:pfam08705  1 LQSRPEPTAPPAESFGFG-EEITPSPKQEQKDKELYPL 37
 
Name Accession Description Interval E-value
Gag_p6 pfam08705
Gag protein p6; HIV protein p6 contains two late-budding domains (L domains) which are short ...
 1-38 1.58e-10

Gag protein p6; HIV protein p6 contains two late-budding domains (L domains) which are short sequence motifs essential for viral particle release. p6 interacts with the endosomal sorting complex and represents a docking site for several cellular and binding factors. The PTAP motif interacts with the cellular budding factor TSG101. This domain is also found in some chimpanzee immunodeficiency virus (SIV-cpz) proteins.


Pssm-ID: 312289  Cd Length: 37  Bit Score: 49.53  E-value: 1.58e-10
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 19172951    1 LQSRPEPTAPPEESFRSGvETTTPPQKQEPIDKELYPL 38
Cdd:pfam08705  1 LQSRPEPTAPPAESFGFG-EEITPSPKQEQKDKELYPL 37
 
Name Accession Description Interval E-value
Gag_p6 pfam08705
Gag protein p6; HIV protein p6 contains two late-budding domains (L domains) which are short ...
 1-38 1.58e-10

Gag protein p6; HIV protein p6 contains two late-budding domains (L domains) which are short sequence motifs essential for viral particle release. p6 interacts with the endosomal sorting complex and represents a docking site for several cellular and binding factors. The PTAP motif interacts with the cellular budding factor TSG101. This domain is also found in some chimpanzee immunodeficiency virus (SIV-cpz) proteins.


Pssm-ID: 312289  Cd Length: 37  Bit Score: 49.53  E-value: 1.58e-10
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 19172951    1 LQSRPEPTAPPEESFRSGvETTTPPQKQEPIDKELYPL 38
Cdd:pfam08705  1 LQSRPEPTAPPAESFGFG-EEITPSPKQEQKDKELYPL 37
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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