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Conserved domains on  [gi|19075564|ref|NP_588064|]
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uncharacterized protein SPOM_SPCC1259.08 [Schizosaccharomyces pombe]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF2457 super family cl26522
Protein of unknown function (DUF2457); This is a family of uncharacterized proteins.
 267-337 3.36e-12

Protein of unknown function (DUF2457); This is a family of uncharacterized proteins.


The actual alignment was detected with superfamily member pfam10446:

Pssm-ID: 431292  Cd Length: 459  Bit Score: 67.72  E-value: 3.36e-12
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 19075564   267 RCPSTPVQTAAAPNesqIPDDTDFVPGTFDEDQPACLAFACSLTHANSKRSIMLPQDIDPTFPDSEPEDDG 337
Cdd:pfam10446 178 RKPRPRKIRPGTPE---LPDSTDFVCGTLDEDRPLEEAYISCLEARRREKHIPIPQDIDPSFPTSDPEDED 245
 
Name Accession Description Interval E-value
DUF2457 pfam10446
Protein of unknown function (DUF2457); This is a family of uncharacterized proteins.
 267-337 3.36e-12

Protein of unknown function (DUF2457); This is a family of uncharacterized proteins.


Pssm-ID: 431292  Cd Length: 459  Bit Score: 67.72  E-value: 3.36e-12
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 19075564   267 RCPSTPVQTAAAPNesqIPDDTDFVPGTFDEDQPACLAFACSLTHANSKRSIMLPQDIDPTFPDSEPEDDG 337
Cdd:pfam10446 178 RKPRPRKIRPGTPE---LPDSTDFVCGTLDEDRPLEEAYISCLEARRREKHIPIPQDIDPSFPTSDPEDED 245
 
Name Accession Description Interval E-value
DUF2457 pfam10446
Protein of unknown function (DUF2457); This is a family of uncharacterized proteins.
 267-337 3.36e-12

Protein of unknown function (DUF2457); This is a family of uncharacterized proteins.


Pssm-ID: 431292  Cd Length: 459  Bit Score: 67.72  E-value: 3.36e-12
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 19075564   267 RCPSTPVQTAAAPNesqIPDDTDFVPGTFDEDQPACLAFACSLTHANSKRSIMLPQDIDPTFPDSEPEDDG 337
Cdd:pfam10446 178 RKPRPRKIRPGTPE---LPDSTDFVCGTLDEDRPLEEAYISCLEARRREKHIPIPQDIDPSFPTSDPEDED 245
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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