|
Name |
Accession |
Description |
Interval |
E-value |
| SRP54_euk |
TIGR01425 |
signal recognition particle protein SRP54; This model represents examples from the eukaryotic ... |
2-426 |
0e+00 |
|
signal recognition particle protein SRP54; This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Pssm-ID: 273615 [Multi-domain] Cd Length: 428 Bit Score: 616.85 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 2 VFADLGRRLNSALGDFSKATSVNEELVDTLLKNICTALLETDVNVRLVQELRSNIKKKINVSTLPQGINGKRIVQKAVFD 81
Cdd:TIGR01425 1 VLAQLGSSLVTALRSMSSATVIDEEVINTMLKEICTALLESDVNPKLVRQMRNNIKKKINLEDIASGINKRKLIQDAVFE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 82 ELCSLVDPKVDAFTPKKGRPSVIMMVGLQGSGKTTTCSKLALHYQRRGLKSCLVAADTFRAGAFDQLKQNAIKARVPYFG 161
Cdd:TIGR01425 81 ELCNLVDPGVEAFTPKKGKTCVIMFVGLQGAGKTTTCTKLAYYYKRRGFKPALVCADTFRAGAFDQLKQNATKAGIPFYG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 162 SYTETDPVVIAKEGVDKFKNDRFDVIIVDTSGRHQQEQELFAEMVEISDAIRPDQTIMILDASIGQAAESQSKAFKETAD 241
Cdd:TIGR01425 161 SYEESDPVKIASEGVEKFRKEKFDIIIVDTSGRHKQEKELFEEMQQVREAIKPDSIIFVMDGSIGQAAFGQAKAFKDSVE 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 242 FGAVIITKLDGHAKGGGALSAVAATKTPIVFIGTGEHINDLERFSPRSFISKLLGLGDLEGLMEHVQSL--DFDKKNMVK 319
Cdd:TIGR01425 241 VGSVIITKLDGHAKGGGALSAVAATKSPIIFIGTGEHVDEFEIFDAEPFVSKLLGMGDLKGLIDKVQDLalNDEEKTLIE 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 320 NLEQGKFTVRDFRDQLGNIMKLGPLSKMASMIPGMS-NMMNGMNDEEGSLRMKRMLYIVDSMTEQELDSDGLLFVEQPSR 398
Cdd:TIGR01425 321 HLKEGTFTLRDWYEQFQNLLKMGPLGNIMSMIPGLShPMMSKGNEEETSAKIKVFMTIMDSMTDRELDSTAKTMLKDPSR 400
|
410 420
....*....|....*....|....*...
gi 19075709 399 VLRVARGSGTSVLEVEETISQVRVFAQM 426
Cdd:TIGR01425 401 IRRVARGSGRDIREVNELLEQYKLFAQM 428
|
|
| PRK00771 |
PRK00771 |
signal recognition particle protein Srp54; Provisional |
6-440 |
2.68e-149 |
|
signal recognition particle protein Srp54; Provisional
Pssm-ID: 179118 [Multi-domain] Cd Length: 437 Bit Score: 434.64 E-value: 2.68e-149
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 6 LGRRLNSALGDFSKATSVNEELVDTLLKNICTALLETDVNVRLVQELRSNIKKKINVSTLPQGINGKRIVQKAVFDELCS 85
Cdd:PRK00771 1 LGESLRDALKKLAGKSRIDEKTVKEVVKDIQRALLQADVNVKLVKELSKSIKERALEEEPPKGLTPREHVIKIVYEELVK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 86 LV-DPKVDAFTPKKgrPSVIMMVGLQGSGKTTTCSKLALHYQRRGLKSCLVAADTFRAGAFDQLKQNAIKARVPYFGSYT 164
Cdd:PRK00771 81 LLgEETEPLVLPLK--PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 165 ETDPVVIAKEGVDKFKNdrFDVIIVDTSGRHQQEQELFAEMVEISDAIRPDQTIMILDASIGQAAESQSKAFKETADFGA 244
Cdd:PRK00771 159 NKDAVEIAKEGLEKFKK--ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAFHEAVGIGG 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 245 VIITKLDGHAKGGGALSAVAATKTPIVFIGTGEHINDLERFSPRSFISKLLGLGDLEGLMEHVQSL--DFDKKNMVKNLE 322
Cdd:PRK00771 237 IIITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLGMGDLESLLEKVEEAldEEEEEKDVEKMM 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 323 QGKFTVRDFRDQLGNIMKLGPLSKMASMIPGmsnMMNGMNDEE---GSLRMKRMLYIVDSMTEQELDSDGLLfveQPSRV 399
Cdd:PRK00771 317 KGKFTLKDMYKQLEAMNKMGPLKQILQMLPG---LGGKLPDEAlevTEEKLKKYKAIMDSMTEEELENPEII---NASRI 390
|
410 420 430 440
....*....|....*....|....*....|....*....|.
gi 19075709 400 LRVARGSGTSVLEVEETISQVRVFAQMAKKIGGKDGILGKL 440
Cdd:PRK00771 391 RRIARGSGTTVEDVRELLKYYKMMKKAMKQLKKGKGKMGKL 431
|
|
| Ffh |
COG0541 |
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular ... |
2-428 |
7.77e-139 |
|
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440307 [Multi-domain] Cd Length: 423 Bit Score: 407.48 E-value: 7.77e-139
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 2 VFADLGRRLNSALGDFSKATSVNEELVDTLLKNICTALLETDVNVRLVQELRSNIKKKINVSTLPQGINGKRIVQKAVFD 81
Cdd:COG0541 1 MFENLSERLQGAFKKLRGKGRLTEENIKEALREVRRALLEADVNLKVVKDFIERVKERALGEEVLKSLTPGQQVIKIVHD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 82 ELCSLVDPKVDAFTPKKGRPSVIMMVGLQGSGKTTTCSKLALHYQRRGLKSCLVAADTFRAGAFDQLKQNAIKARVPYFG 161
Cdd:COG0541 81 ELVELLGGENEELNLAKKPPTVIMMVGLQGSGKTTTAAKLAKYLKKKGKKPLLVAADVYRPAAIEQLKTLGEQIGVPVFP 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 162 SYTETDPVVIAKEGVDKFKNDRFDVIIVDTSGRHQQEQELFAEMVEISDAIRPDQTIMILDASIGQAAESQSKAFKETAD 241
Cdd:COG0541 161 EEDGKDPVDIAKRALEYAKKNGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDETLLVVDAMTGQDAVNVAKAFNEALG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 242 FGAVIITKLDGHAKGGGALSAVAATKTPIVFIGTGEHINDLERFSPRSFISKllglgdlEGLMEHVQSL------DFDK- 314
Cdd:COG0541 241 LTGVILTKLDGDARGGAALSIRAVTGKPIKFIGTGEKLDDLEPFHPDRMASR-------ILGMGDVLSLiekaqeAIDEe 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 315 --KNMVKNLEQGKFTVRDFRDQLGNIMKLGPLSKMASMIPGMSNMMNGMNDEEGSLRMKRMLYIVDSMTEQELDSDGLLf 392
Cdd:COG0541 314 eaEKLAKKLKKGKFDLEDFLEQLQQMKKMGPLKKLLGMLPGMGKLKQLKDLDIDEKELKRIEAIINSMTPEERRNPDII- 392
|
410 420 430
....*....|....*....|....*....|....*.
gi 19075709 393 veQPSRVLRVARGSGTSVLEVEETISQvrvFAQMAK 428
Cdd:COG0541 393 --NGSRKRRIAKGSGTTVQDVNRLLKQ---FEQMKK 423
|
|
| SRP54_G |
cd17875 |
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) ... |
102-293 |
1.12e-132 |
|
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349784 Cd Length: 193 Bit Score: 382.70 E-value: 1.12e-132
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 102 SVIMMVGLQGSGKTTTCSKLALHYQRRGLKSCLVAADTFRAGAFDQLKQNAIKARVPYFGSYTETDPVVIAKEGVDKFKN 181
Cdd:cd17875 1 NVIMFVGLQGSGKTTTAAKLAYYYQKKGYKVGLVCADTFRAGAFDQLKQNATKARVPFYGSYTEKDPVKIAKEGVEKFKK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 182 DRFDVIIVDTSGRHQQEQELFAEMVEISDAIRPDQTIMILDASIGQAAESQSKAFKETADFGAVIITKLDGHAKGGGALS 261
Cdd:cd17875 81 EKFDIIIVDTSGRHKQEEELFEEMKQISDAVKPDEVILVIDASIGQAAEDQAKAFKEAVDIGSVIITKLDGHAKGGGALS 160
|
170 180 190
....*....|....*....|....*....|..
gi 19075709 262 AVAATKTPIVFIGTGEHINDLERFSPRSFISK 293
Cdd:cd17875 161 AVAATGAPIIFIGTGEHIDDLEPFDPKRFVSR 192
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
102-293 |
9.48e-106 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 314.09 E-value: 9.48e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 102 SVIMMVGLQGSGKTTTCSKLALHYQRRGLKSCLVAADTFRAGAFDQLKQNAIKARVPYFGSYTETDPVVIAKEGVDKFKN 181
Cdd:pfam00448 1 NVILLVGLQGSGKTTTIAKLAAYLKKKGKKVLLVAADTFRAAAIEQLKQLAEKLGVPVFGSKTGADPAAVAFDAVEKAKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 182 DRFDVIIVDTSGRHQQEQELFAEMVEISDAIRPDQTIMILDASIGQAAESQSKAFKETADFGAVIITKLDGHAKGGGALS 261
Cdd:pfam00448 81 ENYDVVLVDTAGRLQNDKNLMDELKKIKRVVAPDEVLLVLDATTGQNAVNQAKAFNEAVGITGVILTKLDGDAKGGAALS 160
|
170 180 190
....*....|....*....|....*....|..
gi 19075709 262 AVAATKTPIVFIGTGEHINDLERFSPRSFISK 293
Cdd:pfam00448 161 IVAETGKPIKFIGVGEKIDDLEPFDPERFVSR 192
|
|
| ffh |
TIGR00959 |
signal recognition particle protein; This model represents Ffh (Fifty-Four Homolog), the ... |
3-429 |
5.08e-105 |
|
signal recognition particle protein; This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273364 [Multi-domain] Cd Length: 428 Bit Score: 321.16 E-value: 5.08e-105
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 3 FADLGRRLNSALGDFSKATSVNEELVDTLLKNICTALLETDVNVRLVQELRSNIKKKINVSTLPQGINGKRIVQKAVFDE 82
Cdd:TIGR00959 1 FESLSERLQRIFKKLSGRGTITEKNIKEALREIRLALLEADVNLQVVKDFIKKVKEKALGQEVLKSLSPGQQFIKIVHEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 83 LCSLVDPKVDAFTPKKGRPSVIMMVGLQGSGKTTTCSKLALH-YQRRGLKSCLVAADTFRAGAFDQLKQNAIKARVPYFG 161
Cdd:TIGR00959 81 LVAILGGENAELNLAKKPPTVILMVGLQGSGKTTTCGKLAYYlKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 162 SYTETDPVVIAKEGVDKFKNDRFDVIIVDTSGRHQQEQELFAEMVEISDAIRPDQTIMILDASIGQAAESQSKAFKETAD 241
Cdd:TIGR00959 161 LGKGQSPVEIARRALEYAKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTAKTFNERLG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 242 FGAVIITKLDGHAKGGGALSAVAATKTPIVFIGTGEHINDLERFSPRSFISKLLGLGDLEGLMEHVQSLdFDK---KNMV 318
Cdd:TIGR00959 241 LTGVVLTKLDGDARGGAALSVRSVTGKPIKFIGVGEKIDDLEPFHPERMASRILGMGDILSLVEKAQEV-VDEeeaKKLA 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 319 KNLEQGKFTVRDFRDQLGNIMKLGPLSKMASMIPGMSNMMNGMND-EEGSLRMKRMLYIVDSMTEQELDSDGLLfveQPS 397
Cdd:TIGR00959 320 EKMKKGQFDLEDFLEQLRQIKKMGPLSSLLKMIPGMGGVKPSLSDaDLDEKQFKRIEAIISSMTPEERRNPKIL---NPS 396
|
410 420 430
....*....|....*....|....*....|..
gi 19075709 398 RVLRVARGSGTSVLEVEETISQvrvFAQMAKK 429
Cdd:TIGR00959 397 RRKRIAAGSGTTVQDVNKLIKR---FEQMKKM 425
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
101-293 |
2.63e-90 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 274.67 E-value: 2.63e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 101 PSVIMMVGLQGSGKTTTCSKLALHYQRRGLKS-CLVAADTFRAGAFDQLKQNAIKARVPYFGSYTETDPVVIAKEGVDKF 179
Cdd:smart00962 1 PGVILLVGPNGVGKTTTIAKLAARLKLKGGKKvLLVAADTFRAAAVEQLKTYAEILGVVPVAGGEGADPVAVAKDAVELA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 180 KNDRFDVIIVDTSGRHQQEQELFAEMVEISDAIRPDQTIMILDASIGQAAESQSKAFKETADFGAVIITKLDGHAKGGGA 259
Cdd:smart00962 81 KARGYDVVLIDTAGRLHNDENLMEELKKIKRVIKPDEVLLVSDATTGQDAVEQAKAFNEALGLTGIILTKLDGTAKGGAA 160
|
170 180 190
....*....|....*....|....*....|....
gi 19075709 260 LSAVAATKTPIVFIGTGEHINDLERFSPRSFISK 293
Cdd:smart00962 161 LSIAAETGLPIKFIGTGEKVPDLEPFDPERFVSR 194
|
|
| SRP_G_like |
cd03115 |
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition ... |
103-293 |
1.05e-87 |
|
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognate receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349769 [Multi-domain] Cd Length: 193 Bit Score: 268.09 E-value: 1.05e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 103 VIMMVGLQGSGKTTTCSKLALHYQRRGLKSCLVAADTFRAGAFDQLKQNAIKARVPYFGSYTETDPVVIAKEGVDKFKND 182
Cdd:cd03115 2 VILLVGLQGSGKTTTLAKLARYYQEKGKKVLLIAADTFRAAAVEQLKTLAEKLGVPVFESYTGTDPASIAQEAVEKAKLE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 183 RFDVIIVDTSGRHQQEQELFAEMVEISDAIRPDQTIMILDASIGQAAESQSKAFKETADFGAVIITKLDGHAKGGGALSA 262
Cdd:cd03115 82 GYDVLLVDTAGRLQKDEPLMEELKKVKEVESPDEVLLVLDATTGQEALSQAKAFNEAVGLTGVILTKLDGTAKGGAALSI 161
|
170 180 190
....*....|....*....|....*....|.
gi 19075709 263 VAATKTPIVFIGTGEHINDLERFSPRSFISK 293
Cdd:cd03115 162 VAETKKPIKFIGVGEKPEDLEPFDPERFVSA 192
|
|
| FtsY |
COG0552 |
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular ... |
6-291 |
4.34e-68 |
|
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440318 [Multi-domain] Cd Length: 303 Bit Score: 221.05 E-value: 4.34e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 6 LGRRLNSAlgdFSKATSVNEELVDTLLknicTALLETDVNVRLVQELRSNIKKKINVstlpQGINGKRIVQKAVFDELCS 85
Cdd:COG0552 16 LGEKLKSL---FSGKKKIDEDLLEELE----ELLIEADVGVETTEEIIEELRERVKR----KKLKDPEELKEALKEELLE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 86 LVDPKVDAFTPKKGRPSVIMMVGLQGSGKTTTCSKLALHYQRRGLKSCLVAADTFRAGAFDQLKQNAIKARVPYFGSYTE 165
Cdd:COG0552 85 ILDPVDKPLAIEEKKPFVILVVGVNGVGKTTTIGKLAHRLKAEGKSVLLAAGDTFRAAAIEQLEVWGERVGVPVIAQKEG 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 166 TDPVVIAKEGVDKFKNDRFDVIIVDTSGRHQQEQELFAEM------VEISDAIRPDQTIMILDASIGQAAESQSKAFKET 239
Cdd:COG0552 165 ADPAAVAFDAIQAAKARGADVVIIDTAGRLHNKKNLMEELkkikrvIKKLDPDAPHEVLLVLDATTGQNALSQAKVFNEA 244
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 19075709 240 ADFGAVIITKLDGHAKGGGALSAVAATKTPIVFIGTGEHINDLERFSPRSFI 291
Cdd:COG0552 245 VGVTGIVLTKLDGTAKGGVVLAIADELGIPIKFIGVGEGIDDLRPFDAEEFV 296
|
|
| PRK10416 |
PRK10416 |
signal recognition particle-docking protein FtsY; Provisional |
6-291 |
3.76e-67 |
|
signal recognition particle-docking protein FtsY; Provisional
Pssm-ID: 236686 [Multi-domain] Cd Length: 318 Bit Score: 219.20 E-value: 3.76e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 6 LGRRLNSALGDfskaTSVNEELVDTLLknicTALLETDVNVRLVQELRSNIKKKINvstlPQGINGKRIVQKAVFDELCS 85
Cdd:PRK10416 31 FGEGINGLFAK----KKIDEDLLEELE----ELLIEADVGVETTEEIIEELRERVK----RKNLKDPEELKELLKEELAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 86 LVDPKVDAFTPKKGRPSVIMMVGLQGSGKTTTCSKLALHYQRRGLKSCLVAADTFRAGAFDQLKQNAIKARVPYFGSYTE 165
Cdd:PRK10416 99 ILEPVEKPLNIEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEG 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 166 TDPVVIAKEGVDKFKNDRFDVIIVDTSGRHQQEQELFAEMVEISDAIR------PDQTIMILDASIGQAAESQSKAFKET 239
Cdd:PRK10416 179 ADPASVAFDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKkadpdaPHEVLLVLDATTGQNALSQAKAFHEA 258
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 19075709 240 ADFGAVIITKLDGHAKGGGALSAVAATKTPIVFIGTGEHINDLERFSPRSFI 291
Cdd:PRK10416 259 VGLTGIILTKLDGTAKGGVVFAIADELGIPIKFIGVGEGIDDLQPFDAEEFV 310
|
|
| SRP_G |
cd18539 |
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) ... |
102-287 |
1.07e-65 |
|
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349786 Cd Length: 193 Bit Score: 210.92 E-value: 1.07e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 102 SVIMMVGLQGSGKTTTCSKLALHYQRRGLKSCLVAADTFRAGAFDQLKQNAIKARVPYFGSYTETDPVVIAKEGVDKFKN 181
Cdd:cd18539 1 TVILLVGLQGSGKTTTAAKLALYLKKKGKKVLLVAADVYRPAAIEQLQTLGEQVGVPVFESGDGQSPVDIAKRALEKAKE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 182 DRFDVIIVDTSGRHQQEQELFAEMVEISDAIRPDQTIMILDASIGQAAESQSKAFKETADFGAVIITKLDGHAKGGGALS 261
Cdd:cd18539 81 EGFDVVIVDTAGRLHIDEELMDELKEIKEVLNPDEVLLVVDAMTGQDAVNVAKAFNERLGLTGVVLTKLDGDARGGAALS 160
|
170 180
....*....|....*....|....*.
gi 19075709 262 AVAATKTPIVFIGTGEHINDLERFSP 287
Cdd:cd18539 161 IRHVTGKPIKFIGVGEKIEDLEPFHP 186
|
|
| ftsY |
TIGR00064 |
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and ... |
26-291 |
1.70e-62 |
|
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 272883 [Multi-domain] Cd Length: 277 Bit Score: 205.57 E-value: 1.70e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 26 ELVDTLLKNICTALLETDVNVRLVQELRSNIKKKINVSTLPQGINGKRIVQKAVFDELCSLVDPKVDA-FTPKKGRPSVI 104
Cdd:TIGR00064 1 KDDEDFFEELEEILLESDVGYEVVEKIIEALKKELKGKKVKDAEKLKEILKEYLKEILKEDLLKNTDLeLIVEENKPNVI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 105 MMVGLQGSGKTTTCSKLALHYQRRGLKSCLVAADTFRAGAFDQLKQNAIKARVPYFGSYTETDPVVIAKEGVDKFKNDRF 184
Cdd:TIGR00064 81 LFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARNI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 185 DVIIVDTSGRHQQEQELFAEMVEISDAIR------PDQTIMILDASIGQAAESQSKAFKETADFGAVIITKLDGHAKGGG 258
Cdd:TIGR00064 161 DVVLIDTAGRLQNKVNLMDELKKIKRVIKkvdkdaPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLDGTAKGGI 240
|
250 260 270
....*....|....*....|....*....|...
gi 19075709 259 ALSAVAATKTPIVFIGTGEHINDLERFSPRSFI 291
Cdd:TIGR00064 241 ILSIAYELKLPIKFIGVGEKIDDLAPFDADWFV 273
|
|
| PRK14974 |
PRK14974 |
signal recognition particle-docking protein FtsY; |
16-293 |
1.65e-61 |
|
signal recognition particle-docking protein FtsY;
Pssm-ID: 237875 [Multi-domain] Cd Length: 336 Bit Score: 205.21 E-value: 1.65e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 16 DFSKATSVNEELVDTLLKNICTALLETDVNVRLVQELRSNIKKKINVSTLPQGINGKRIVQKAVFDELCSLVDP----KV 91
Cdd:PRK14974 51 DKAKITEIKEKDIEDLLEELELELLESDVALEVAEEILESLKEKLVGKKVKRGEDVEEIVKNALKEALLEVLSVgdlfDL 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 92 DAFTPKKGRPSVIMMVGLQGSGKTTTCSKLALHYQRRGLKSCLVAADTFRAGAFDQLKQNAIKARVPYFGSYTETDPVVI 171
Cdd:PRK14974 131 IEEIKSKGKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAV 210
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 172 AKEGVDKFKNDRFDVIIVDTSGRHQQEQELFAEMVEISDAIRPDQTIMILDASIGQAAESQSKAFKETADFGAVIITKLD 251
Cdd:PRK14974 211 AYDAIEHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTKVD 290
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 19075709 252 GHAKGGGALSAVAATKTPIVFIGTGEHINDLERFSPRSFISK 293
Cdd:PRK14974 291 ADAKGGAALSIAYVIGKPILFLGVGQGYDDLIPFDPDWFVDK 332
|
|
| FtsY |
cd17874 |
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle ... |
103-291 |
6.81e-57 |
|
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle (SRP) receptor (SR), is homologous to the SRP receptor alpha-subunit (SRalpha) of the eukaryotic SR. It interacts with the signal-recognition particle (SRP) and is required for the co-translational membrane targeting of proteins.
Pssm-ID: 349783 Cd Length: 199 Bit Score: 188.16 E-value: 6.81e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 103 VIMMVGLQGSGKTTTCSKLALHYQRRGLKSCLVAADTFRAGAFDQLKQNAIKARVPYFGSYTETDPVVIAKEGVDKFKND 182
Cdd:cd17874 2 VILFVGVNGVGKTTTIGKLAHYLKNQGKKVVLAAGDTFRAAAVEQLEEWAERLGVPVISQNEGADPAAVAFDAIQAAKAR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 183 RFDVIIVDTSGRHQQEQELFAEMVEISDAI------RPDQTIMILDASIGQAAESQSKAFKETADFGAVIITKLDGHAKG 256
Cdd:cd17874 82 GIDVVLIDTAGRLHTKKNLMEELKKIKRVIkkkdpeAPHEVLLVLDATTGQNALEQAKEFNEAVGLTGIILTKLDGTAKG 161
|
170 180 190
....*....|....*....|....*....|....*
gi 19075709 257 GGALSAVAATKTPIVFIGTGEHINDLERFSPRSFI 291
Cdd:cd17874 162 GIVLSIADELKIPVKFVGVGEGIDDLRPFDPEAFV 196
|
|
| SRP_SPB |
pfam02978 |
Signal peptide binding domain; |
325-428 |
8.98e-34 |
|
Signal peptide binding domain;
Pssm-ID: 460771 [Multi-domain] Cd Length: 95 Bit Score: 122.89 E-value: 8.98e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 325 KFTVRDFRDQLGNIMKLGPLSKMASMIPGMSNMMNGMNDEEgslRMKRMLYIVDSMTEQELDSDGLLfveQPSRVLRVAR 404
Cdd:pfam02978 1 KFTLRDFLEQLQQIKKMGPLSKILSMIPGMGKKDDDIDSEK---KLKRIEAIIDSMTPKERDNPDII---NASRKRRIAR 74
|
90 100
....*....|....*....|....
gi 19075709 405 GSGTSVLEVEETISQvrvFAQMAK 428
Cdd:pfam02978 75 GSGTSVQEVNRLLKQ---FKQMKK 95
|
|
| SRalpha_C |
cd17876 |
C-terminal domain of signal recognition particle receptor alpha subunit; The ... |
103-292 |
1.50e-33 |
|
C-terminal domain of signal recognition particle receptor alpha subunit; The signal-recognition particle (SRP) receptor (SR) alpha-subunit (SRalpha) of the eukaryotic SR interacts with the signal-recognition particle (SRP) and is essential for the co-translational membrane targeting of proteins.
Pssm-ID: 349785 Cd Length: 204 Bit Score: 126.19 E-value: 1.50e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 103 VIMMVGLQGSGKTTTCSKLALHYQRRGLKSCLVAADTFRAGAFDQLKQNAIKARVPYFGSYTETDPVVIAKEGVDKFKND 182
Cdd:cd17876 2 VIVFCGVNGVGKSTNLAKIAYWLLSNGFRVLIAACDTFRSGAVEQLRTHARRLGVELYEKGYGKDPAAVAKEAIKYARDQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 183 RFDVIIVDTSGRHQQEQELFAEMVEISDAIRPDQTIMILDASIGQAAESQSKAF-KETADFG---------AVIITKLDG 252
Cdd:cd17876 82 GFDVVLIDTAGRMQNNEPLMRALAKLIKENNPDLVLFVGEALVGNDAVDQLKKFnQALADYSpsdnprlidGIVLTKFDT 161
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 19075709 253 -HAKGGGALSAVAATKTPIVFIGTGEHINDLERFSPRSFIS 292
Cdd:cd17876 162 iDDKVGAALSMVYATGQPIVFVGTGQTYTDLKKLNVKAVVN 202
|
|
| FlhF |
COG1419 |
Flagellar biosynthesis GTPase FlhF [Cell motility]; |
32-288 |
4.63e-32 |
|
Flagellar biosynthesis GTPase FlhF [Cell motility];
Pssm-ID: 441029 [Multi-domain] Cd Length: 361 Bit Score: 126.52 E-value: 4.63e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 32 LKNICTALLETDVNVRLVQELRSNIKKKINVSTlpqgingkriVQKAVFDELCSLVDPKVDAFTPKKGrpsVIMMVGLQG 111
Cdd:COG1419 108 LAELLERLLEAGVSPELARELLEKLPEDLSAEE----------AWRALLEALARRLPVAEDPLLDEGG---VIALVGPTG 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 112 SGKTTTCSKLALHYQRRGLKS-CLVAADTFRAGAFDQLKQNAIKARVPYFGSYTETDpvviAKEGVDKFKNdrFDVIIVD 190
Cdd:COG1419 175 VGKTTTIAKLAARFVLRGKKKvALITTDTYRIGAVEQLKTYARILGVPVEVAYDPEE----LKEALERLRD--KDLVLID 248
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 191 TSGRHQQEQELFAEMVEISDAIRPDQTIMILDASI-GQAAESQSKAFKEtADFGAVIITKLDGHAKGGGALSAVAATKTP 269
Cdd:COG1419 249 TAGRSPRDPELIEELKALLDAGPPIEVYLVLSATTkYEDLKEIVEAFSS-LGLDGLILTKLDETASLGSILNLLIRTGLP 327
|
250 260
....*....|....*....|
gi 19075709 270 IVFIGTGEHI-NDLERFSPR 288
Cdd:COG1419 328 LSYITNGQRVpEDIEVADPE 347
|
|
| FlhF |
cd17873 |
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP) ... |
103-293 |
7.38e-29 |
|
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP)-type GTPase that is essential for the placement and assembly of polar flagella. It is similar to the 54 kd subunit (SRP54) of the signal recognition particle (SRP) that mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR).
Pssm-ID: 349782 [Multi-domain] Cd Length: 189 Bit Score: 112.64 E-value: 7.38e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 103 VIMMVGLQGSGKTTTCSKLALHYQ-RRGLKSCLVAADTFRAGAFDQLKqnaikarvpyfgSYTET--DPVVIAKEG---- 175
Cdd:cd17873 2 VIALVGPTGVGKTTTLAKLAARYVlKKGKKVALITTDTYRIGAVEQLK------------TYAEImgIPVEVAEDPedla 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 176 --VDKFKNdrFDVIIVDTSGRHQQEQELFAEMVEISDAIRPDQTIMILDASigqaaeSQSKAFKETAD------FGAVII 247
Cdd:cd17873 70 daLERLSD--RDLILIDTAGRSPRDKEQLEELKELLGAGEDIEVHLVLSAT------TKAKDLKEIIErfsplgYRGLIL 141
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 19075709 248 TKLDGHAKGGGALSAVAATKTPIVFIGTGEHI-NDLERFSPRSFISK 293
Cdd:cd17873 142 TKLDETTSLGSVLSVLAESQLPVSYVTTGQRVpEDIEVASPLRLARL 188
|
|
| flhF |
PRK05703 |
flagellar biosynthesis protein FlhF; |
19-276 |
1.52e-21 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235570 [Multi-domain] Cd Length: 424 Bit Score: 96.89 E-value: 1.52e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 19 KATSVNEELVDTLLKNICTALLETDVNVRLVQELRSNIKKKINVStlpqgingKRIVQKAVFDELCSLVDPKVDAFTPKK 98
Cdd:PRK05703 150 LSGLRQVERIPPEFAELYKRLKRSGLSPEIAEKLLKLLLEHMPPR--------ERTAWRYLLELLANMIPVRVEDILKQG 221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 99 GrpsVIMMVGLQGSGKTTTCSKLALHY-QRRGLKSC-LVAADTFRAGAFDQLKQNAIKARVPYFGSYTETDpvviAKEGV 176
Cdd:PRK05703 222 G---VVALVGPTGVGKTTTLAKLAARYaLLYGKKKVaLITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKE----LAKAL 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 177 DKFKNdrFDVIIVDTSGRHQQEQELFAE---MVEISDAirPDQTIMILdasigqAAESQSKAFKETAD-FGAV-----II 247
Cdd:PRK05703 295 EQLRD--CDVILIDTAGRSQRDKRLIEElkaLIEFSGE--PIDVYLVL------SATTKYEDLKDIYKhFSRLpldglIF 364
|
250 260
....*....|....*....|....*....
gi 19075709 248 TKLDGHAKGGGALSAVAATKTPIVFIGTG 276
Cdd:PRK05703 365 TKLDETSSLGSILSLLIESGLPISYLTNG 393
|
|
| SRP54_N |
pfam02881 |
SRP54-type protein, helical bundle domain; |
6-83 |
1.33e-16 |
|
SRP54-type protein, helical bundle domain;
Pssm-ID: 460734 [Multi-domain] Cd Length: 75 Bit Score: 74.43 E-value: 1.33e-16
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 19075709 6 LGRRLNSALGDFSKATSVNEELVDTLLKNICTALLETDVNVRLVQELRSNIKKKInvsTLPQGINGKRIVQKAVFDEL 83
Cdd:pfam02881 1 LGEKLSSLFKGLRGKGKIDEEDLEEALKELEEALLEADVGVEVVKKIIERLREKA---VGEKKLKPPQEVKKILKEEL 75
|
|
| FlhF |
TIGR03499 |
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility] |
11-193 |
4.12e-14 |
|
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility]
Pssm-ID: 274609 [Multi-domain] Cd Length: 282 Bit Score: 72.75 E-value: 4.12e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 11 NSALGDFSKATSVNEELVDTLLKNICtallETDVNVRLVQELRSNIKKKINVstlpqgingkrivqkavfdelcslvDPK 90
Cdd:TIGR03499 136 RAKLYERLLEAGVSEELARELLEKLP----EDADAEDAWRWLREALEGMLPV-------------------------KPE 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 91 VDAFTPKKGrpsVIMMVGLQGSGKTTTCSKLALHY-QRRGLKSC-LVAADTFRAGAFDQLKQNAIKARVPYFGSYTETDp 168
Cdd:TIGR03499 187 EDPILEQGG---VIALVGPTGVGKTTTLAKLAARFaLEHGKKKVaLITTDTYRIGAVEQLKTYAEILGIPVKVARDPKE- 262
|
170 180
....*....|....*....|....*
gi 19075709 169 vviAKEGVDKFKNdrFDVIIVDTSG 193
Cdd:TIGR03499 263 ---LREALDRLRD--KDLILIDTAG 282
|
|
| SRP54_N |
smart00963 |
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle ... |
10-87 |
1.18e-13 |
|
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species.
Pssm-ID: 214941 [Multi-domain] Cd Length: 77 Bit Score: 66.04 E-value: 1.18e-13
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 19075709 10 LNSALGDFSKATSVNEELVDTLLKNICTALLETDVNVRLVQELRSNIKKKInVSTLPQGINGKRIVQKAVFDELCSLV 87
Cdd:smart00963 1 LSKALGKLLGELFLTEKDDEELLEELEEALLEADVGVEVVKEIIERVKEKA-KGEVLKGLTPKQEVKKILKEELVKIL 77
|
|
| flhF |
PRK11889 |
flagellar biosynthesis protein FlhF; |
104-279 |
8.09e-13 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 183360 [Multi-domain] Cd Length: 436 Bit Score: 70.48 E-value: 8.09e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 104 IMMVGLQGSGKTTTCSKLA--LHYQRRGLKscLVAADTFRAGAFDQLKQN--AIKARVpyfgsYTETDPVVIAKeGVDKF 179
Cdd:PRK11889 244 IALIGPTGVGKTTTLAKMAwqFHGKKKTVG--FITTDHSRIGTVQQLQDYvkTIGFEV-----IAVRDEAAMTR-ALTYF 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 180 KND-RFDVIIVDTSGRHQQEQELFAEMVEISDAIRPDQTIMILDASIgqaaesQSK-------AFKETADFGaVIITKLD 251
Cdd:PRK11889 316 KEEaRVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASM------KSKdmieiitNFKDIHIDG-IVFTKFD 388
|
170 180
....*....|....*....|....*...
gi 19075709 252 GHAKGGGALSAVAATKTPIVFIGTGEHI 279
Cdd:PRK11889 389 ETASSGELLKIPAVSSAPIVLMTDGQDV 416
|
|
| PRK12724 |
PRK12724 |
flagellar biosynthesis regulator FlhF; Provisional |
19-251 |
1.15e-12 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183703 [Multi-domain] Cd Length: 432 Bit Score: 69.99 E-value: 1.15e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 19 KATSVNEELVDTLLKNICTALLETDVNVRLVQELRSNIKKKInvSTLPQGINGKrIVQKAV--FDELCSlVDPKVDAFTP 96
Cdd:PRK12724 144 SETTIVRKEKDSPLQRLGERLVREGMSQSYVEEMASKLEERL--SPVDQGRNHN-VTERAVtyLEERVS-VDSDLFSGTG 219
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 97 KKGRpSVIMMVGLQGSGKTTTCSKLALHYQ-RRGLKSCLVAADTFRAGAFDQLKQNAIKARVPYFgsytetdPVVIAKEG 175
Cdd:PRK12724 220 KNQR-KVVFFVGPTGSGKTTSIAKLAAKYFlHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFY-------PVKDIKKF 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 176 VDKFKNDRFDVIIVDTSGRHQQEQELFAEMVEI------SDAIrpdQTIMILDASIG-QAAESQSKAFkETADFGAVIIT 248
Cdd:PRK12724 292 KETLARDGSELILIDTAGYSHRNLEQLERMQSFyscfgeKDSV---ENLLVLSSTSSyHHTLTVLKAY-ESLNYRRILLT 367
|
...
gi 19075709 249 KLD 251
Cdd:PRK12724 368 KLD 370
|
|
| flhF |
PRK14722 |
flagellar biosynthesis regulator FlhF; Provisional |
89-293 |
4.28e-12 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173185 [Multi-domain] Cd Length: 374 Bit Score: 67.82 E-value: 4.28e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 89 PKVDAFTPKKGRPSVIMMVGLQGSGKTTTCSKLALHYQRR--GLKSCLVAADTFRAGAFDQLKqnaikarvpYFGSYTET 166
Cdd:PRK14722 125 PVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCVMRfgASKVALLTTDSYRIGGHEQLR---------IFGKILGV 195
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 167 dPVVIAKEGVD------KFKNDRfdVIIVDTSGRHQQEQELFAEMVEISDAIRPDQTIMILDA-SIGQAAESQSKAFKET 239
Cdd:PRK14722 196 -PVHAVKDGGDlqlalaELRNKH--MVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNAtSHGDTLNEVVQAYRSA 272
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 19075709 240 A--------DFGAVIITKLDGHAKGGGALSAVAATKTPIVFIGTGEHINDLERFSPRSFISK 293
Cdd:PRK14722 273 AgqpkaalpDLAGCILTKLDEASNLGGVLDTVIRYKLPVHYVSTGQKVPENLYVATKKFLLK 334
|
|
| PRK12726 |
PRK12726 |
flagellar biosynthesis regulator FlhF; Provisional |
103-289 |
5.99e-11 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183704 [Multi-domain] Cd Length: 407 Bit Score: 64.37 E-value: 5.99e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 103 VIMMVGLQGSGKTTTCSKLALHYQRRGLKSCLVAADTFRAGAFDQLKQNAIKARVPYFgsyTETDPVVIAKEGVDKFKND 182
Cdd:PRK12726 208 IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELI---VATSPAELEEAVQYMTYVN 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 183 RFDVIIVDTSGRHQQEQELFAEMVEISDAIRPDQTIMILDASIGQAAESQSKAFKETADFGAVIITKLDGHAKGGGALSA 262
Cdd:PRK12726 285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDETTRIGDLYTV 364
|
170 180
....*....|....*....|....*..
gi 19075709 263 VAATKTPIVFIGTGEHINDlERFSPRS 289
Cdd:PRK12726 365 MQETNLPVLYMTDGQNITE-NIFRPKS 390
|
|
| flhF |
PRK06731 |
flagellar biosynthesis regulator FlhF; Validated |
104-279 |
9.99e-11 |
|
flagellar biosynthesis regulator FlhF; Validated
Pssm-ID: 75717 [Multi-domain] Cd Length: 270 Bit Score: 62.46 E-value: 9.99e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 104 IMMVGLQGSGKTTTCSKLALHYQRRGLKSCLVAADTFRAGAFDQLkQNAIKArvPYFGSYTETDPVVIAKeGVDKFKND- 182
Cdd:PRK06731 78 IALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQL-QDYVKT--IGFEVIAVRDEAAMTR-ALTYFKEEa 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 183 RFDVIIVDTSGRHQQEQELFAEMVEISDAIRPDQTIMILDASIGQAAESQSKAFKETADFGAVIITKLDGHAKGGGALSA 262
Cdd:PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKI 233
|
170
....*....|....*..
gi 19075709 263 VAATKTPIVFIGTGEHI 279
Cdd:PRK06731 234 PAVSSAPIVLMTDGQDV 250
|
|
| flhF |
PRK14723 |
flagellar biosynthesis regulator FlhF; Provisional |
103-284 |
1.68e-10 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 237802 [Multi-domain] Cd Length: 767 Bit Score: 63.67 E-value: 1.68e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 103 VIMMVGLQGSGKTTTCSKLALHY-QRRGL-KSCLVAADTFRAGAFDQLKqnaIKAR---VPYFGSYTETDPVVIAKEGVD 177
Cdd:PRK14723 187 VLALVGPTGVGKTTTTAKLAARCvAREGAdQLALLTTDSFRIGALEQLR---IYGRilgVPVHAVKDAADLRFALAALGD 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 178 KfkndrfDVIIVDTSGRHQQEQELFAEMVEISDAIRPDQTIMILD-ASIGQAAESQSKAFKETA--DFGAVIITKLDGHA 254
Cdd:PRK14723 264 K------HLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNaASHGDTLNEVVHAYRHGAgeDVDGCIITKLDEAT 337
|
170 180 190
....*....|....*....|....*....|.
gi 19075709 255 KGGGALSAVAATKTPIVFIGTGEHI-NDLER 284
Cdd:PRK14723 338 HLGPALDTVIRHRLPVHYVSTGQKVpEHLEL 368
|
|
| PRK12727 |
PRK12727 |
flagellar biosynthesis protein FlhF; |
103-291 |
1.98e-10 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 237182 [Multi-domain] Cd Length: 559 Bit Score: 63.09 E-value: 1.98e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 103 VIMMVGLQGSGKTTTCSKLALHY--QRRGLKSCLVAADTFRAGAFDQL----KQNAIKARvpyfgsytETDPVVIAKEGV 176
Cdd:PRK12727 352 VIALVGPTGAGKTTTIAKLAQRFaaQHAPRDVALVTTDTQRVGGREQLhsygRQLGIAVH--------EADSAESLLDLL 423
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 177 DKFKNdrFDVIIVDTSGRHQQEQELFAEMVEISdAIRPDQTIMIL--DASIGQAAESQSKaFKeTADFGAVIITKLDGHA 254
Cdd:PRK12727 424 ERLRD--YKLVLIDTAGMGQRDRALAAQLNWLR-AARQVTSLLVLpaNAHFSDLDEVVRR-FA-HAKPQGVVLTKLDETG 498
|
170 180 190
....*....|....*....|....*....|....*...
gi 19075709 255 KGGGALSAVAATKTPIVFIGTGEHI-NDLERFSPRSFI 291
Cdd:PRK12727 499 RFGSALSVVVDHQMPITWVTDGQRVpDDLHRANAASLV 536
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
100-224 |
4.73e-10 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 58.15 E-value: 4.73e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 100 RPSVIMMVGLQGSGKTTTCSKLALHYQRRGLKSCLVAADTFRAGAFDQLKQnaikarVPYFGSYTETDPVVIAKEGVDKF 179
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLL------IIVGGKKASGSGELRLRLALALA 74
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 19075709 180 KNDRFDVIIVDTSGRH----QQEQELFAEMVEISDAIRPDQTIMILDAS 224
Cdd:smart00382 75 RKLKPDVLILDEITSLldaeQEALLLLLEELRLLLLLKSEKNLTVILTT 123
|
|
| PRK12723 |
PRK12723 |
flagellar biosynthesis regulator FlhF; Provisional |
39-293 |
2.26e-08 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183702 [Multi-domain] Cd Length: 388 Bit Score: 56.06 E-value: 2.26e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 39 LLETDVNVRLVQELRSNIKKKINVSTLPqgiNGKRIVQKAV--FDELCSLVDPKVDAFTPKkgrpsVIMMVGLQGSGKTT 116
Cdd:PRK12723 118 LRENDFSESYIKDINEFIKKEFSLSDLD---DYDKVRDSVIiyIAKTIKCSGSIIDNLKKR-----VFILVGPTGVGKTT 189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 117 TCSKLALHY----QRRGLKSCLVAADTFRAGAFDQLKQNAIKARVPYFGSYTETDpvviAKEGVDKFKNdrFDVIIVDTS 192
Cdd:PRK12723 190 TIAKLAAIYginsDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKD----LKEEITQSKD--FDLVLVDTI 263
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 193 GRHQQEQELFAEMVEISDAIRPDQTIMILDASIGQAAESQsKAFKETADFG--AVIITKLDGHAKGGGALSAVAATKTPI 270
Cdd:PRK12723 264 GKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVK-EIFHQFSPFSykTVIFTKLDETTCVGNLISLIYEMRKEV 342
|
250 260
....*....|....*....|....
gi 19075709 271 VFIGTGEHI-NDLERFSPRSFISK 293
Cdd:PRK12723 343 SYVTDGQIVpHNISIAEPLTFIKK 366
|
|
| MeaB |
pfam03308 |
Methylmalonyl Co-A mutase-associated GTPase MeaB; Family members were previously thought to be ... |
92-256 |
1.76e-07 |
|
Methylmalonyl Co-A mutase-associated GTPase MeaB; Family members were previously thought to be ArgK proteins acting as ATPase enzymes and kinases. They are now believed to be methylmalonyl Co-A mutase-associated GTPase MeaB. Structural studies of MeaB and the human ortholog (methylmalonyl associated protein A) MMAA, reveal alpha-helical domains at the N- and C-termini as well as a Ras-like GTPase domain. Mutational analysis of MeaB, show prohibited growth in Methylobacterium due to the inability to convert methylmalonyl-CoA to succinyl-CoA caused by an inactive form of methylmalonyl-CoA mutatase (mcm). In humans, mutations in (MMAA) are associated with the fatal disease methylmalonyl aciduria.
Pssm-ID: 281323 [Multi-domain] Cd Length: 272 Bit Score: 52.82 E-value: 1.76e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 92 DAFTPKKGRPSVIMMVGLQGSGKTTTCSKLALHYQRRGLKSCLVAAD---TFRAGAF--DQLKQNAIKARVPYF------ 160
Cdd:pfam03308 24 RRLMPRAGRAHRVGVTGVPGAGKSTLIEALGMELRRRGHRVAVLAVDpssPRTGGSIlgDKTRMDRLAVDPGAFirpsps 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 161 -----GSYTETDPVVIAKEGVDkfkndrFDVIIVDTSGRHQQEQELfAEMVeisdairpDQTIMILDASIGQAAESQSKA 235
Cdd:pfam03308 104 rgalgGLSRKTREVVLLLEAAG------FDVIIIETVGVGQSEVDV-ANMV--------DTFVLLTMPGGGDELQGIKAG 168
|
170 180
....*....|....*....|.
gi 19075709 236 FKETADFgaVIITKLDGHAKG 256
Cdd:pfam03308 169 IMEIADI--YVVNKADGNLPG 187
|
|
| Grc3 |
COG1341 |
Polynucleotide 5'-kinase, involved in rRNA processing [Translation, ribosomal structure and ... |
100-220 |
3.76e-06 |
|
Polynucleotide 5'-kinase, involved in rRNA processing [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440952 Cd Length: 353 Bit Score: 49.25 E-value: 3.76e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 100 RPSVIMMVGLQGSGKTTTCSKLALHYQRRGLKSCLVAAD--------------TFRAGAFDQLKQnaIKARVPYF-GSyt 164
Cdd:COG1341 34 GPGRIMVLGPVDSGKSTLTTLLANKLLAEGLKVAIIDADvgqsdlgppttvslGLVREPVLSLSE--LKAEKLRFvGS-- 109
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 19075709 165 eTDP-------VVIAKEGVDKFKNDRFDVIIVDTSG--RHQQEQELFAEMVEisdAIRPDQTIMI 220
Cdd:COG1341 110 -ISPsghllriVAGVKRLVERAKERGADRIVIDTDGwvRGPAAREYKAALIE---ALKPDLIVVL 170
|
|
| flhF |
PRK14721 |
flagellar biosynthesis regulator FlhF; Provisional |
103-279 |
7.59e-06 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173184 [Multi-domain] Cd Length: 420 Bit Score: 48.41 E-value: 7.59e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 103 VIMMVGLQGSGKTTTCSKLALH-YQRRGL-KSCLVAADTFRAGAFDQL----KQNAIKARvpyfgSYTETDPVVIAkegV 176
Cdd:PRK14721 193 VYALIGPTGVGKTTTTAKLAARaVIRHGAdKVALLTTDSYRIGGHEQLriygKLLGVSVR-----SIKDIADLQLM---L 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 177 DKFKNDRfdVIIVDTSGRHQQEQELFAEMVEISDAIRPDQTIMILDA-SIGQAAESQSKAFKETADFGAvIITKLDGHAK 255
Cdd:PRK14721 265 HELRGKH--MVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNAtSSGDTLDEVISAYQGHGIHGC-IITKVDEAAS 341
|
170 180
....*....|....*....|....
gi 19075709 256 GGGALSAVAATKTPIVFIGTGEHI 279
Cdd:PRK14721 342 LGIALDAVIRRKLVLHYVTNGQKV 365
|
|
| PHA02518 |
PHA02518 |
ParA-like protein; Provisional |
111-212 |
2.81e-04 |
|
ParA-like protein; Provisional
Pssm-ID: 222854 [Multi-domain] Cd Length: 211 Bit Score: 42.14 E-value: 2.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 111 GSGKTTTCSKLALHYQRRGLKSCLVAADTFRAGAfdqlkqNAIKARvpyfgsyTETDPVVIAKEGVDKFKND------RF 184
Cdd:PHA02518 11 GAGKTTVATNLASWLHADGHKVLLVDLDPQGSST------DWAEAR-------EEGEPLIPVVRMGKSIRADlpkvasGY 77
|
90 100
....*....|....*....|....*...
gi 19075709 185 DVIIVDTSGrhqQEQELFAEMVEISDAI 212
Cdd:PHA02518 78 DYVVVDGAP---QDSELARAALRIADMV 102
|
|
| COG4639 |
COG4639 |
Predicted kinase [General function prediction only]; |
100-146 |
5.74e-04 |
|
Predicted kinase [General function prediction only];
Pssm-ID: 443677 [Multi-domain] Cd Length: 145 Bit Score: 40.20 E-value: 5.74e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 19075709 100 RPSVIMMVGLQGSGKTTTCSKLALHYQrrglkscLVAADTFRAGAFD 146
Cdd:COG4639 1 MLSLVVLIGLPGSGKSTFARRLFAPTE-------VVSSDDIRALLGG 40
|
|
| Tda10 |
COG4240 |
Pantothenate kinase-related protein Tda10 (topoisomerase I damage affected protein) [General ... |
97-140 |
1.48e-03 |
|
Pantothenate kinase-related protein Tda10 (topoisomerase I damage affected protein) [General function prediction only];
Pssm-ID: 443382 Cd Length: 298 Bit Score: 40.61 E-value: 1.48e-03
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 19075709 97 KKGRPSVIMMVGLQGSGKTTTCSKLALHYQRRGLKSCLVAADTF 140
Cdd:COG4240 43 QLGRPLIVGINGGQGSGKSTLAAFLALILEQLGLRVAVLSIDDL 86
|
|
| AAA_33 |
pfam13671 |
AAA domain; This family of domains contain only a P-loop motif, that is characteriztic of the ... |
103-230 |
1.58e-03 |
|
AAA domain; This family of domains contain only a P-loop motif, that is characteriztic of the AAA superfamily. Many of the proteins in this family are just short fragments so there is no Walker B motif.
Pssm-ID: 463952 [Multi-domain] Cd Length: 143 Bit Score: 38.83 E-value: 1.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 103 VIMMVGLQGSGKTTTCSKLAlhyqrRGLKSCLVAADTFRAGAF-----DQLKQNAIKARVPYFgsytetdpvviAKEGVD 177
Cdd:pfam13671 1 LILLVGLPGSGKSTLARRLL-----EELGAVRLSSDDERKRLFgegrpSISYYTDATDRTYER-----------LHELAR 64
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 19075709 178 KFKNDRFDVIIvDTSGRHQQEQELFAEMVEISDAIRpdqTIMILDASIGQAAE 230
Cdd:pfam13671 65 IALRAGRPVIL-DATNLRRDERARLLALAREYGVPV---RIVVFEAPEEVLRE 113
|
|
| Zeta_toxin |
pfam06414 |
Zeta toxin; This family consists of several bacterial zeta toxin proteins. Zeta toxin is ... |
92-195 |
4.86e-03 |
|
Zeta toxin; This family consists of several bacterial zeta toxin proteins. Zeta toxin is thought to be part of a postregulational killing system in bacteria. It relies on antitoxin/toxin systems that secure stable inheritance of low and medium copy number plasmids during cell division and kill cells that have lost the plasmid.
Pssm-ID: 428926 Cd Length: 192 Bit Score: 38.50 E-value: 4.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075709 92 DAFTPKKGRPSVIMMVGLQGSGKTTTCSKLALHYQRRGlkSCL-VAADTFRA--GAFDQLkqnaIKARVPYFGSYTETDP 168
Cdd:pfam06414 2 DDKTTSQERPKAILLGGQPGAGKTELARALLDELGRQG--NVVrIDPDDFRElhPHYREL----QAADPKTASEYTQPDA 75
|
90 100
....*....|....*....|....*..
gi 19075709 169 VVIAKEGVDKFKNDRFDvIIVDTSGRH 195
Cdd:pfam06414 76 SRWVEKLLQHAIENGYN-IILEGTLRS 101
|
|
| CysC |
COG0529 |
Adenylylsulfate kinase or related kinase [Inorganic ion transport and metabolism]; ... |
96-143 |
6.73e-03 |
|
Adenylylsulfate kinase or related kinase [Inorganic ion transport and metabolism]; Adenylylsulfate kinase or related kinase is part of the Pathway/BioSystem: Cysteine biosynthesis
Pssm-ID: 440295 [Multi-domain] Cd Length: 189 Bit Score: 37.76 E-value: 6.73e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 19075709 96 PKKGRPSVIMMVGLQGSGKTTTCSKLALHYQRRGLKSCLVAADTFRAG 143
Cdd:COG0529 11 LKGQKGFVVWFTGLSGSGKSTLANALERRLFERGRHVYLLDGDNVRHG 58
|
|
| |
