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Conserved domains on  [gi|19113966|ref|NP_593054|]
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krr family protein [Schizosaccharomyces pombe]

Protein Classification

KRI1 family protein( domain architecture ID 10524403)

KRI1 family protein similar to Saccharomyces cerevisiae KRI1 (KRR1-interacting protein 1) that is required for 40S ribosome biogenesis

Gene Ontology:  GO:0042254
PubMed:  11027267

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Kri1_C pfam12936
KRI1-like family C-terminal; The yeast member of this family (Kri1p) is found to be required ...
 509-595 5.19e-24

KRI1-like family C-terminal; The yeast member of this family (Kri1p) is found to be required for 40S ribosome biogenesis in the nucleolus. This is the C-terminal domain of the family.


:

Pssm-ID: 463756  Cd Length: 89  Bit Score: 96.03  E-value: 5.19e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113966   509 RKIDEYVEEKYGVP-EAVIVKNS-KFRYQQVAPETFGLDILDILNASDADLNNYVGLKKMTPYRTPEEIARDKKKYGKKK 586
Cdd:pfam12936   1 KKLEEYVDEYYKLDyEDIIGDLPtRFKYREVSPNSFGLTAREILLADDKELNQWVSLKKLAPYRDEEKEKKDKKKYKKKA 80


                  ....*....
gi 19113966   587 RLREWKKQV 595
Cdd:pfam12936  81 RLREWRKKV 89
Kri1 pfam05178
KRI1-like family; The yeast member of this family (Kri1p) is found to be required for 40S ...
 381-460 1.45e-15

KRI1-like family; The yeast member of this family (Kri1p) is found to be required for 40S ribosome biogenesis in the nucleolus.


:

Pssm-ID: 461569  Cd Length: 103  Bit Score: 72.68  E-value: 1.45e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113966   381 ERLEEASQKRLEEVNRLKNLKRKELEEKLNQVIEIAGSKNIDVSKLD-------LDEDFDPEKWESKMSEIFNENYYEED 453
Cdd:pfam05178   1 ERKEEEKEEREEELKRLKKLKREEIEEKLKKIKEAAGNEGAGLKELTdeewtdlLDGDFDPDEWDRKMKKIFGEDYYAEE 80


                  ....*....
gi 19113966   454 SA--KKPEF 460
Cdd:pfam05178  81 DDeeKKPTW 89
 
Name Accession Description Interval E-value
Kri1_C pfam12936
KRI1-like family C-terminal; The yeast member of this family (Kri1p) is found to be required ...
 509-595 5.19e-24

KRI1-like family C-terminal; The yeast member of this family (Kri1p) is found to be required for 40S ribosome biogenesis in the nucleolus. This is the C-terminal domain of the family.


Pssm-ID: 463756  Cd Length: 89  Bit Score: 96.03  E-value: 5.19e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113966   509 RKIDEYVEEKYGVP-EAVIVKNS-KFRYQQVAPETFGLDILDILNASDADLNNYVGLKKMTPYRTPEEIARDKKKYGKKK 586
Cdd:pfam12936   1 KKLEEYVDEYYKLDyEDIIGDLPtRFKYREVSPNSFGLTAREILLADDKELNQWVSLKKLAPYRDEEKEKKDKKKYKKKA 80


                  ....*....
gi 19113966   587 RLREWKKQV 595
Cdd:pfam12936  81 RLREWRKKV 89
Kri1 pfam05178
KRI1-like family; The yeast member of this family (Kri1p) is found to be required for 40S ...
 381-460 1.45e-15

KRI1-like family; The yeast member of this family (Kri1p) is found to be required for 40S ribosome biogenesis in the nucleolus.


Pssm-ID: 461569  Cd Length: 103  Bit Score: 72.68  E-value: 1.45e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113966   381 ERLEEASQKRLEEVNRLKNLKRKELEEKLNQVIEIAGSKNIDVSKLD-------LDEDFDPEKWESKMSEIFNENYYEED 453
Cdd:pfam05178   1 ERKEEEKEEREEELKRLKKLKREEIEEKLKKIKEAAGNEGAGLKELTdeewtdlLDGDFDPDEWDRKMKKIFGEDYYAEE 80


                  ....*....
gi 19113966   454 SA--KKPEF 460
Cdd:pfam05178  81 DDeeKKPTW 89
 
Name Accession Description Interval E-value
Kri1_C pfam12936
KRI1-like family C-terminal; The yeast member of this family (Kri1p) is found to be required ...
 509-595 5.19e-24

KRI1-like family C-terminal; The yeast member of this family (Kri1p) is found to be required for 40S ribosome biogenesis in the nucleolus. This is the C-terminal domain of the family.


Pssm-ID: 463756  Cd Length: 89  Bit Score: 96.03  E-value: 5.19e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113966   509 RKIDEYVEEKYGVP-EAVIVKNS-KFRYQQVAPETFGLDILDILNASDADLNNYVGLKKMTPYRTPEEIARDKKKYGKKK 586
Cdd:pfam12936   1 KKLEEYVDEYYKLDyEDIIGDLPtRFKYREVSPNSFGLTAREILLADDKELNQWVSLKKLAPYRDEEKEKKDKKKYKKKA 80


                  ....*....
gi 19113966   587 RLREWKKQV 595
Cdd:pfam12936  81 RLREWRKKV 89
Kri1 pfam05178
KRI1-like family; The yeast member of this family (Kri1p) is found to be required for 40S ...
 381-460 1.45e-15

KRI1-like family; The yeast member of this family (Kri1p) is found to be required for 40S ribosome biogenesis in the nucleolus.


Pssm-ID: 461569  Cd Length: 103  Bit Score: 72.68  E-value: 1.45e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113966   381 ERLEEASQKRLEEVNRLKNLKRKELEEKLNQVIEIAGSKNIDVSKLD-------LDEDFDPEKWESKMSEIFNENYYEED 453
Cdd:pfam05178   1 ERKEEEKEEREEELKRLKKLKREEIEEKLKKIKEAAGNEGAGLKELTdeewtdlLDGDFDPDEWDRKMKKIFGEDYYAEE 80


                  ....*....
gi 19113966   454 SA--KKPEF 460
Cdd:pfam05178  81 DDeeKKPTW 89
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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