|
Name |
Accession |
Description |
Interval |
E-value |
| Indigoidine_A |
pfam04227 |
Indigoidine synthase A like protein; Indigoidine is a blue pigment synthesized by Erwinia ... |
46-338 |
5.78e-170 |
|
Indigoidine synthase A like protein; Indigoidine is a blue pigment synthesized by Erwinia chrysanthemi implicated in pathogenicity and protection from oxidative stress. IdgA is involved in indigoidine biosynthesis, but its specific function is unknown. The recommended name for this protein is now pseudouridine-5'-phosphate glycosidase.
Pssm-ID: 461231 Cd Length: 289 Bit Score: 489.60 E-value: 5.78e-170
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113514 46 EVTEALKNNVPVVALESTIITHGMPYPQNEELAIQVESKVRSMGAVPATIALLNGQCTIGLEQFQLSELAKSGetAYKVS 125
Cdd:pfam04227 1 EVAEALAAGKPVVALESTIITHGLPYPQNLETALEVEAIVRENGAVPATIAILDGRPKVGLTDEELERLADAG--GAKVS 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113514 126 RRDLSYVASQRLNGGTTVAATMILARAAGIDVFATGGIGGVHRGAENSMDISADLIELGRTRVAVVSAGVKSILDIGRTL 205
Cdd:pfam04227 79 RRDLAYVLALGLDGGTTVAATMILAHLAGIRVFATGGIGGVHRGAEETMDISADLTELGRTPVAVVCAGVKSILDIPRTL 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113514 206 EVLETQGVPVVTLGppKSAFPAFFSRESKFQSPLSLETPQLIANMLFSNIQLGQECGTLVAIPTPHHCSIDYEKMEALIE 285
Cdd:pfam04227 159 EYLETQGVPVVGYG--TDEFPAFYTRDSGFKSPYRVDSPEEAAAIIRAQWALGLGSGVLVANPIPEEHALDREEIDAAIE 236
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 19113514 286 TCLQRSVQLGITGKNVTPWLLGELLRESKGKSLNTNIDLVLNNAEKASLIAKE 338
Cdd:pfam04227 237 QALAEAEEQGITGKAVTPFLLARIAELTGGKSLEANIALVKNNARLAAQIAVA 289
|
|
| PsuG |
COG2313 |
Pseudouridine-5'-phosphate glycosidase (pseudoU degradation) [Nucleotide transport and ... |
39-343 |
1.39e-158 |
|
Pseudouridine-5'-phosphate glycosidase (pseudoU degradation) [Nucleotide transport and metabolism];
Pssm-ID: 441887 Cd Length: 303 Bit Score: 461.10 E-value: 1.39e-158
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113514 39 SPLALSKEVTEALKNNVPVVALESTIITHGMPYPQNEELAIQVESKVRSMGAVPATIALLNGQCTIGLEQFQLSELAKSG 118
Cdd:COG2313 2 KYLRISPEVAAALAAGRPVVALESTIISHGMPYPQNLETAREVEAIVREAGAVPATIAVLDGKIKVGLSDEELERLAQAK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113514 119 EtAYKVSRRDLSYVASQRLNGGTTVAATMILARAAGIDVFATGGIGGVHRGAENSMDISADLIELGRTRVAVVSAGVKSI 198
Cdd:COG2313 82 D-VAKVSRRDLPVALARGRSGATTVAATMILAALAGIRVFATGGIGGVHRGAEETFDISADLQELARTPVAVVCAGAKSI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113514 199 LDIGRTLEVLETQGVPVVTLGppKSAFPAFFSRESKFQSPLSLETPQLIANMLFSNIQLGQECGTLVAIPTPHHCSIDYE 278
Cdd:COG2313 161 LDLPLTLEYLETLGVPVIGYG--TDEFPAFYSRSSGLPVPYRVDSPEEIAAILRAKWALGLPGGVLVANPIPEEDALDAE 238
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 19113514 279 KMEALIETCLQRSVQLGITGKNVTPWLLGELLRESKGKSLNTNIDLVLNNAEKASLIAKELAVLK 343
Cdd:COG2313 239 EIDAAIAEALAEAEAQGIRGKAVTPFLLARIAELTGGRSLEANIALVKNNARLAAEIAVALAALA 303
|
|
| YeiC_kinase_like |
cd01941 |
YeiC-like sugar kinase. Found in eukaryotes and bacteria, YeiC-like kinase is part of the ... |
392-734 |
1.12e-89 |
|
YeiC-like sugar kinase. Found in eukaryotes and bacteria, YeiC-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Pssm-ID: 238916 [Multi-domain] Cd Length: 288 Bit Score: 283.05 E-value: 1.12e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113514 392 EVVCVGSVSIDSVLKLDNpltSKFLGTSHPCHSEQAFGGVAHNMALASSLMGASTKLVSCVGTKSVPtSSIKEYLTKSSL 471
Cdd:cd01941 1 EIVVIGAANIDLRGKVSG---SLVPGTSNPGHVKQSPGGVGRNIAENLARLGVSVALLSAVGDDSEG-ESILEESEKAGL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113514 472 QHTIVEKSNFTSCSYTAINDCNGNLLLAGADMAIMENLS---YSEIKDDLNDAKYICFDGNISPSLMLDITTSKSSK-QR 547
Cdd:cd01941 77 NVRGIVFEGRSTASYTAILDKDGDLVVALADMDIYELLTpdfLRKIREALKEAKPIVVDANLPEEALEYLLALAAKHgVP 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113514 548 VVFEPTSGPKTLKILKVLsvASIDFITPNKFELDVLFQAMKDGNFFENESwwqklnsfgitssfyneierftkstgieei 627
Cdd:cd01941 157 VAFEPTSAPKLKKLFYLL--HAIDLLTPNRAELEALAGALIENNEDENKA------------------------------ 204
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113514 628 tengilqKCFHLLPFIKNIIVKLGPNGALLISSEklqgvnsnsaslftpGNVTVKYYPVPkVIATPVNASGTGDTFIGTF 707
Cdd:cd01941 205 -------AKILLLPGIKNVIVTLGAKGVLLSSRE---------------GGVETKLFPAP-QPETVVNVTGAGDAFVAGL 261
|
330 340
....*....|....*....|....*..
gi 19113514 708 TALLSKGWGMDDAIDTAQKAAGLTLQC 734
Cdd:cd01941 262 VAGLLEGMSLDDSLRFAQAAAALTLES 288
|
|
| PfkB |
pfam00294 |
pfkB family carbohydrate kinase; This family includes a variety of carbohydrate and pyrimidine ... |
392-734 |
1.08e-24 |
|
pfkB family carbohydrate kinase; This family includes a variety of carbohydrate and pyrimidine kinases.
Pssm-ID: 425587 [Multi-domain] Cd Length: 294 Bit Score: 104.73 E-value: 1.08e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113514 392 EVVCVGSVSIDSVlkldnPLTSKFLGTSHPCHS-EQAFGGVAHNMALASSLMGASTKLVSCVGtKSVPTSSIKEYLTKSS 470
Cdd:pfam00294 1 KVVVIGEANIDLI-----GNVEGLPGELVRVSTvEKGPGGKGANVAVALARLGGDVAFIGAVG-DDNFGEFLLQELKKEG 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113514 471 LQHT-IVEKSNFTSCSYTAINDCNGN--LLLAGADMAIMENLSYSEIKDDLNDAKYICFDGNISPSLMLDI--TTSKSSK 545
Cdd:pfam00294 75 VDTDyVVIDEDTRTGTALIEVDGDGErtIVFNRGAAADLTPEELEENEDLLENADLLYISGSLPLGLPEATleELIEAAK 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113514 546 QRVVFEP----TSGPKTLKILKVLSVAsiDFITPNKFELDVLfqamkdgnffeneswwqklnsfgitssfyneierftks 621
Cdd:pfam00294 155 NGGTFDPnlldPLGAAREALLELLPLA--DLLKPNEEELEAL-------------------------------------- 194
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113514 622 TGIEEITENGILQKCFHLLP-FIKNIIVKLGPNGALLISSEKlqgvnsnsaslftpgnvTVKYYPVPKViaTPVNASGTG 700
Cdd:pfam00294 195 TGAKLDDIEEALAALHKLLAkGIKTVIVTLGADGALVVEGDG-----------------EVHVPAVPKV--KVVDTTGAG 255
|
330 340 350
....*....|....*....|....*....|....
gi 19113514 701 DTFIGTFTALLSKGWGMDDAIDTAQKAAGLTLQC 734
Cdd:pfam00294 256 DSFVGGFLAGLLAGKSLEEALRFANAAAALVVQK 289
|
|
| RbsK |
COG0524 |
Sugar or nucleoside kinase, ribokinase family [Carbohydrate transport and metabolism]; Sugar ... |
393-733 |
1.02e-19 |
|
Sugar or nucleoside kinase, ribokinase family [Carbohydrate transport and metabolism]; Sugar or nucleoside kinase, ribokinase family is part of the Pathway/BioSystem: Glycolysis
Pssm-ID: 440290 [Multi-domain] Cd Length: 301 Bit Score: 90.33 E-value: 1.02e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113514 393 VVCVGSVSIDSVLKLDNPltSKFLGTSHPCHSEQAFGGVAHNMALASSLMGASTKLVSCVGTKSVPTSsIKEYLTKS--S 470
Cdd:COG0524 2 VLVIGEALVDLVARVDRL--PKGGETVLAGSFRRSPGGAAANVAVALARLGARVALVGAVGDDPFGDF-LLAELRAEgvD 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113514 471 LQHTIVEKSNFTSCSYTAINDCNGN--LLLAGADMAimenLSYSEIKDD-LNDAKYICFDG-----NISPSLMLD-ITTS 541
Cdd:COG0524 79 TSGVRRDPGAPTGLAFILVDPDGERtiVFYRGANAE----LTPEDLDEAlLAGADILHLGGitlasEPPREALLAaLEAA 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113514 542 KSSKQRVVFEPTSGPKTLK-----ILKVLSVAsiDFITPNKfeldvlfqamkdgnffeneswwqklnsfgitssfyNEIE 616
Cdd:COG0524 155 RAAGVPVSLDPNYRPALWEparelLRELLALV--DILFPNE-----------------------------------EEAE 197
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113514 617 RFTKSTGIEEITEnGILQKCfhllpfIKNIIVKLGPNGALLISSEKLQgvnsnsaslftpgnvtvkYYPVPKViaTPVNA 696
Cdd:COG0524 198 LLTGETDPEEAAA-ALLARG------VKLVVVTLGAEGALLYTGGEVV------------------HVPAFPV--EVVDT 250
|
330 340 350
....*....|....*....|....*....|....*..
gi 19113514 697 SGTGDTFIGTFTALLSKGWGMDDAIDTAQKAAGLTLQ 733
Cdd:COG0524 251 TGAGDAFAAGFLAGLLEGLDLEEALRFANAAAALVVT 287
|
|
| PRK09850 |
PRK09850 |
pseudouridine kinase; Provisional |
393-742 |
2.74e-09 |
|
pseudouridine kinase; Provisional
Pssm-ID: 182111 [Multi-domain] Cd Length: 313 Bit Score: 59.23 E-value: 2.74e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113514 393 VVCVGSVSIDSVLKLDNPLTskfLGTSHPCHSEQAFGGVAHNMALASSLMGASTKLVSCVGTKSVPTSSIKEylTKSSLQ 472
Cdd:PRK09850 7 VVIIGSANIDVAGYSHESLN---YADSNPGKIKFTPGGVGRNIAQNLALLGNKAWLLSAVGSDFYGQSLLTQ--TNQSGV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113514 473 HT----IVEKSNftSCSYTAINDCNGNLLLAGADMAIMENLS---YSEIKDDLNDAKYICFDGNISPSlMLDITTSKSSK 545
Cdd:PRK09850 82 YVdkclIVPGEN--TSSYLSLLDNTGEMLVAINDMNISNAITaeyLAQHREFIQRAKVIVADCNISEE-ALAWILDNAAN 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113514 546 QRVVFEPTSGPKTLKILKVLSvaSIDFITPNKFELDVLfqamkdgnffeneswwqklnsFGITSSFYNEIERftkstgie 625
Cdd:PRK09850 159 VPVFVDPVSAWKCVKVRDRLN--QIHTLKPNRLEAETL---------------------SGIALSGREDVAK-------- 207
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113514 626 eitengiLQKCFHLLPfIKNIIVKLGPNGallISSEKLQGVNSNSASLFTpgNVtvkyypvpkviatpVNASGTGDTFIG 705
Cdd:PRK09850 208 -------VAAWFHQHG-LNRLVLSMGGDG---VYYSDISGESGWSAPIKT--NV--------------INVTGAGDAMMA 260
|
330 340 350
....*....|....*....|....*....|....*..
gi 19113514 706 TFTALLSKGWGMDDAIDTAQKAAGLTLQCNFSVNPEI 742
Cdd:PRK09850 261 GLASCWVDGMPFAESVRFAQGCSSMALSCEYTNNPDL 297
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| Indigoidine_A |
pfam04227 |
Indigoidine synthase A like protein; Indigoidine is a blue pigment synthesized by Erwinia ... |
46-338 |
5.78e-170 |
|
Indigoidine synthase A like protein; Indigoidine is a blue pigment synthesized by Erwinia chrysanthemi implicated in pathogenicity and protection from oxidative stress. IdgA is involved in indigoidine biosynthesis, but its specific function is unknown. The recommended name for this protein is now pseudouridine-5'-phosphate glycosidase.
Pssm-ID: 461231 Cd Length: 289 Bit Score: 489.60 E-value: 5.78e-170
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113514 46 EVTEALKNNVPVVALESTIITHGMPYPQNEELAIQVESKVRSMGAVPATIALLNGQCTIGLEQFQLSELAKSGetAYKVS 125
Cdd:pfam04227 1 EVAEALAAGKPVVALESTIITHGLPYPQNLETALEVEAIVRENGAVPATIAILDGRPKVGLTDEELERLADAG--GAKVS 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113514 126 RRDLSYVASQRLNGGTTVAATMILARAAGIDVFATGGIGGVHRGAENSMDISADLIELGRTRVAVVSAGVKSILDIGRTL 205
Cdd:pfam04227 79 RRDLAYVLALGLDGGTTVAATMILAHLAGIRVFATGGIGGVHRGAEETMDISADLTELGRTPVAVVCAGVKSILDIPRTL 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113514 206 EVLETQGVPVVTLGppKSAFPAFFSRESKFQSPLSLETPQLIANMLFSNIQLGQECGTLVAIPTPHHCSIDYEKMEALIE 285
Cdd:pfam04227 159 EYLETQGVPVVGYG--TDEFPAFYTRDSGFKSPYRVDSPEEAAAIIRAQWALGLGSGVLVANPIPEEHALDREEIDAAIE 236
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 19113514 286 TCLQRSVQLGITGKNVTPWLLGELLRESKGKSLNTNIDLVLNNAEKASLIAKE 338
Cdd:pfam04227 237 QALAEAEEQGITGKAVTPFLLARIAELTGGKSLEANIALVKNNARLAAQIAVA 289
|
|
| PsuG |
COG2313 |
Pseudouridine-5'-phosphate glycosidase (pseudoU degradation) [Nucleotide transport and ... |
39-343 |
1.39e-158 |
|
Pseudouridine-5'-phosphate glycosidase (pseudoU degradation) [Nucleotide transport and metabolism];
Pssm-ID: 441887 Cd Length: 303 Bit Score: 461.10 E-value: 1.39e-158
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113514 39 SPLALSKEVTEALKNNVPVVALESTIITHGMPYPQNEELAIQVESKVRSMGAVPATIALLNGQCTIGLEQFQLSELAKSG 118
Cdd:COG2313 2 KYLRISPEVAAALAAGRPVVALESTIISHGMPYPQNLETAREVEAIVREAGAVPATIAVLDGKIKVGLSDEELERLAQAK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113514 119 EtAYKVSRRDLSYVASQRLNGGTTVAATMILARAAGIDVFATGGIGGVHRGAENSMDISADLIELGRTRVAVVSAGVKSI 198
Cdd:COG2313 82 D-VAKVSRRDLPVALARGRSGATTVAATMILAALAGIRVFATGGIGGVHRGAEETFDISADLQELARTPVAVVCAGAKSI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113514 199 LDIGRTLEVLETQGVPVVTLGppKSAFPAFFSRESKFQSPLSLETPQLIANMLFSNIQLGQECGTLVAIPTPHHCSIDYE 278
Cdd:COG2313 161 LDLPLTLEYLETLGVPVIGYG--TDEFPAFYSRSSGLPVPYRVDSPEEIAAILRAKWALGLPGGVLVANPIPEEDALDAE 238
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 19113514 279 KMEALIETCLQRSVQLGITGKNVTPWLLGELLRESKGKSLNTNIDLVLNNAEKASLIAKELAVLK 343
Cdd:COG2313 239 EIDAAIAEALAEAEAQGIRGKAVTPFLLARIAELTGGRSLEANIALVKNNARLAAEIAVALAALA 303
|
|
| YeiC_kinase_like |
cd01941 |
YeiC-like sugar kinase. Found in eukaryotes and bacteria, YeiC-like kinase is part of the ... |
392-734 |
1.12e-89 |
|
YeiC-like sugar kinase. Found in eukaryotes and bacteria, YeiC-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Pssm-ID: 238916 [Multi-domain] Cd Length: 288 Bit Score: 283.05 E-value: 1.12e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113514 392 EVVCVGSVSIDSVLKLDNpltSKFLGTSHPCHSEQAFGGVAHNMALASSLMGASTKLVSCVGTKSVPtSSIKEYLTKSSL 471
Cdd:cd01941 1 EIVVIGAANIDLRGKVSG---SLVPGTSNPGHVKQSPGGVGRNIAENLARLGVSVALLSAVGDDSEG-ESILEESEKAGL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113514 472 QHTIVEKSNFTSCSYTAINDCNGNLLLAGADMAIMENLS---YSEIKDDLNDAKYICFDGNISPSLMLDITTSKSSK-QR 547
Cdd:cd01941 77 NVRGIVFEGRSTASYTAILDKDGDLVVALADMDIYELLTpdfLRKIREALKEAKPIVVDANLPEEALEYLLALAAKHgVP 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113514 548 VVFEPTSGPKTLKILKVLsvASIDFITPNKFELDVLFQAMKDGNFFENESwwqklnsfgitssfyneierftkstgieei 627
Cdd:cd01941 157 VAFEPTSAPKLKKLFYLL--HAIDLLTPNRAELEALAGALIENNEDENKA------------------------------ 204
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113514 628 tengilqKCFHLLPFIKNIIVKLGPNGALLISSEklqgvnsnsaslftpGNVTVKYYPVPkVIATPVNASGTGDTFIGTF 707
Cdd:cd01941 205 -------AKILLLPGIKNVIVTLGAKGVLLSSRE---------------GGVETKLFPAP-QPETVVNVTGAGDAFVAGL 261
|
330 340
....*....|....*....|....*..
gi 19113514 708 TALLSKGWGMDDAIDTAQKAAGLTLQC 734
Cdd:cd01941 262 VAGLLEGMSLDDSLRFAQAAAALTLES 288
|
|
| PfkB |
pfam00294 |
pfkB family carbohydrate kinase; This family includes a variety of carbohydrate and pyrimidine ... |
392-734 |
1.08e-24 |
|
pfkB family carbohydrate kinase; This family includes a variety of carbohydrate and pyrimidine kinases.
Pssm-ID: 425587 [Multi-domain] Cd Length: 294 Bit Score: 104.73 E-value: 1.08e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113514 392 EVVCVGSVSIDSVlkldnPLTSKFLGTSHPCHS-EQAFGGVAHNMALASSLMGASTKLVSCVGtKSVPTSSIKEYLTKSS 470
Cdd:pfam00294 1 KVVVIGEANIDLI-----GNVEGLPGELVRVSTvEKGPGGKGANVAVALARLGGDVAFIGAVG-DDNFGEFLLQELKKEG 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113514 471 LQHT-IVEKSNFTSCSYTAINDCNGN--LLLAGADMAIMENLSYSEIKDDLNDAKYICFDGNISPSLMLDI--TTSKSSK 545
Cdd:pfam00294 75 VDTDyVVIDEDTRTGTALIEVDGDGErtIVFNRGAAADLTPEELEENEDLLENADLLYISGSLPLGLPEATleELIEAAK 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113514 546 QRVVFEP----TSGPKTLKILKVLSVAsiDFITPNKFELDVLfqamkdgnffeneswwqklnsfgitssfyneierftks 621
Cdd:pfam00294 155 NGGTFDPnlldPLGAAREALLELLPLA--DLLKPNEEELEAL-------------------------------------- 194
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113514 622 TGIEEITENGILQKCFHLLP-FIKNIIVKLGPNGALLISSEKlqgvnsnsaslftpgnvTVKYYPVPKViaTPVNASGTG 700
Cdd:pfam00294 195 TGAKLDDIEEALAALHKLLAkGIKTVIVTLGADGALVVEGDG-----------------EVHVPAVPKV--KVVDTTGAG 255
|
330 340 350
....*....|....*....|....*....|....
gi 19113514 701 DTFIGTFTALLSKGWGMDDAIDTAQKAAGLTLQC 734
Cdd:pfam00294 256 DSFVGGFLAGLLAGKSLEEALRFANAAAALVVQK 289
|
|
| RbsK |
COG0524 |
Sugar or nucleoside kinase, ribokinase family [Carbohydrate transport and metabolism]; Sugar ... |
393-733 |
1.02e-19 |
|
Sugar or nucleoside kinase, ribokinase family [Carbohydrate transport and metabolism]; Sugar or nucleoside kinase, ribokinase family is part of the Pathway/BioSystem: Glycolysis
Pssm-ID: 440290 [Multi-domain] Cd Length: 301 Bit Score: 90.33 E-value: 1.02e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113514 393 VVCVGSVSIDSVLKLDNPltSKFLGTSHPCHSEQAFGGVAHNMALASSLMGASTKLVSCVGTKSVPTSsIKEYLTKS--S 470
Cdd:COG0524 2 VLVIGEALVDLVARVDRL--PKGGETVLAGSFRRSPGGAAANVAVALARLGARVALVGAVGDDPFGDF-LLAELRAEgvD 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113514 471 LQHTIVEKSNFTSCSYTAINDCNGN--LLLAGADMAimenLSYSEIKDD-LNDAKYICFDG-----NISPSLMLD-ITTS 541
Cdd:COG0524 79 TSGVRRDPGAPTGLAFILVDPDGERtiVFYRGANAE----LTPEDLDEAlLAGADILHLGGitlasEPPREALLAaLEAA 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113514 542 KSSKQRVVFEPTSGPKTLK-----ILKVLSVAsiDFITPNKfeldvlfqamkdgnffeneswwqklnsfgitssfyNEIE 616
Cdd:COG0524 155 RAAGVPVSLDPNYRPALWEparelLRELLALV--DILFPNE-----------------------------------EEAE 197
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113514 617 RFTKSTGIEEITEnGILQKCfhllpfIKNIIVKLGPNGALLISSEKLQgvnsnsaslftpgnvtvkYYPVPKViaTPVNA 696
Cdd:COG0524 198 LLTGETDPEEAAA-ALLARG------VKLVVVTLGAEGALLYTGGEVV------------------HVPAFPV--EVVDT 250
|
330 340 350
....*....|....*....|....*....|....*..
gi 19113514 697 SGTGDTFIGTFTALLSKGWGMDDAIDTAQKAAGLTLQ 733
Cdd:COG0524 251 TGAGDAFAAGFLAGLLEGLDLEEALRFANAAAALVVT 287
|
|
| ribokinase |
cd01174 |
Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This ... |
393-733 |
1.07e-15 |
|
Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.
Pssm-ID: 238579 [Multi-domain] Cd Length: 292 Bit Score: 78.36 E-value: 1.07e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113514 393 VVCVGSVSIDSVLKLDN-PL---TskFLGTSHpchsEQAFGGVAHNMALASSLMGASTKLVSCVGtKSVPTSSIKEYLTK 468
Cdd:cd01174 2 VVVVGSINVDLVTRVDRlPKpgeT--VLGSSF----ETGPGGKGANQAVAAARLGARVAMIGAVG-DDAFGDELLENLRE 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113514 469 SSLQHTIVEKSNFTSCSYTAIN-DCNGN---LLLAGADMAIMEnLSYSEIKDDLNDAKYICFDGNISPSLMLD-ITTSKS 543
Cdd:cd01174 75 EGIDVSYVEVVVGAPTGTAVITvDESGEnriVVVPGANGELTP-ADVDAALELIAAADVLLLQLEIPLETVLAaLRAARR 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113514 544 SKQRVVFEP---TSGPKTLkilkvlsVASIDFITPNKFELDVLfqamkdgnffeneswwqklnsfgitssfyneierftk 620
Cdd:cd01174 154 AGVTVILNPapaRPLPAEL-------LALVDILVPNETEAALL------------------------------------- 189
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113514 621 sTGIEEITENGILQ--KCFHLLPfIKNIIVKLGPNGALLISSEKlqgvnsnsaslftpgnvtVKYYPVPKViaTPVNASG 698
Cdd:cd01174 190 -TGIEVTDEEDAEKaaRLLLAKG-VKNVIVTLGAKGALLASGGE------------------VEHVPAFKV--KAVDTTG 247
|
330 340 350
....*....|....*....|....*....|....*
gi 19113514 699 TGDTFIGTFTALLSKGWGMDDAIDTAQKAAGLTLQ 733
Cdd:cd01174 248 AGDTFIGALAAALARGLSLEEAIRFANAAAALSVT 282
|
|
| ribokinase_group_A |
cd01942 |
Ribokinase-like subgroup A. Found in bacteria and archaea, this subgroup is part of the ... |
393-734 |
4.77e-10 |
|
Ribokinase-like subgroup A. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Pssm-ID: 238917 [Multi-domain] Cd Length: 279 Bit Score: 61.17 E-value: 4.77e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113514 393 VVCVGSVSIDSVLKLDN--PLTSKFLGTshpcHSEQAFGGVAHNMALASSLMGASTKLVSCVGTKSVPtSSIKEYLTKS- 469
Cdd:cd01942 2 VAVVGHLNYDIILKVESfpGPFESVLVK----DLRREFGGSAGNTAVALAKLGLSPGLVAAVGEDFHG-RLYLEELREEg 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113514 470 ---SLQHTIVEKSNFTSCSytaINDCNGNLLLA---GAdmaiMENLSYSEIKDDLNDAKYICFDGNisPSLMLDITTSKS 543
Cdd:cd01942 77 vdtSHVRVVDEDSTGVAFI---LTDGDDNQIAYfypGA----MDELEPNDEADPDGLADIVHLSSG--PGLIELARELAA 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113514 544 SKQRVVFEPT---SGPKTLKILKVLSVASIdfitpnkfeldvlfqamkdgnFFENEswwqklnsfgitssfyNEIERFTK 620
Cdd:cd01942 148 GGITVSFDPGqelPRLSGEELEEILERADI---------------------LFVND----------------YEAELLKE 190
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113514 621 STGIEEITENgilqkcfhllPFIKNIIVKLGPNGALLISSEKLqgvnsnsaslftpgnVTVKYYPVPKVIATpvnaSGTG 700
Cdd:cd01942 191 RTGLSEAELA----------SGVRVVVVTLGPKGAIVFEDGEE---------------VEVPAVPAVKVVDT----TGAG 241
|
330 340 350
....*....|....*....|....*....|....
gi 19113514 701 DTFIGTFTALLSKGWGMDDAIDTAQKAAGLTLQC 734
Cdd:cd01942 242 DAFRAGFLYGLLRGYDLEESLRLGNLAASLKVER 275
|
|
| PRK09850 |
PRK09850 |
pseudouridine kinase; Provisional |
393-742 |
2.74e-09 |
|
pseudouridine kinase; Provisional
Pssm-ID: 182111 [Multi-domain] Cd Length: 313 Bit Score: 59.23 E-value: 2.74e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113514 393 VVCVGSVSIDSVLKLDNPLTskfLGTSHPCHSEQAFGGVAHNMALASSLMGASTKLVSCVGTKSVPTSSIKEylTKSSLQ 472
Cdd:PRK09850 7 VVIIGSANIDVAGYSHESLN---YADSNPGKIKFTPGGVGRNIAQNLALLGNKAWLLSAVGSDFYGQSLLTQ--TNQSGV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113514 473 HT----IVEKSNftSCSYTAINDCNGNLLLAGADMAIMENLS---YSEIKDDLNDAKYICFDGNISPSlMLDITTSKSSK 545
Cdd:PRK09850 82 YVdkclIVPGEN--TSSYLSLLDNTGEMLVAINDMNISNAITaeyLAQHREFIQRAKVIVADCNISEE-ALAWILDNAAN 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113514 546 QRVVFEPTSGPKTLKILKVLSvaSIDFITPNKFELDVLfqamkdgnffeneswwqklnsFGITSSFYNEIERftkstgie 625
Cdd:PRK09850 159 VPVFVDPVSAWKCVKVRDRLN--QIHTLKPNRLEAETL---------------------SGIALSGREDVAK-------- 207
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113514 626 eitengiLQKCFHLLPfIKNIIVKLGPNGallISSEKLQGVNSNSASLFTpgNVtvkyypvpkviatpVNASGTGDTFIG 705
Cdd:PRK09850 208 -------VAAWFHQHG-LNRLVLSMGGDG---VYYSDISGESGWSAPIKT--NV--------------INVTGAGDAMMA 260
|
330 340 350
....*....|....*....|....*....|....*..
gi 19113514 706 TFTALLSKGWGMDDAIDTAQKAAGLTLQCNFSVNPEI 742
Cdd:PRK09850 261 GLASCWVDGMPFAESVRFAQGCSSMALSCEYTNNPDL 297
|
|
| PTZ00292 |
PTZ00292 |
ribokinase; Provisional |
388-733 |
3.28e-09 |
|
ribokinase; Provisional
Pssm-ID: 185541 [Multi-domain] Cd Length: 326 Bit Score: 58.98 E-value: 3.28e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113514 388 SKPAEVVCVGSVSIDSVLKLDN-PLTSKFL-GTSHpchsEQAFGGVAHNMALASSLMGASTKLVSCVGTKSVPTSSIKEY 465
Cdd:PTZ00292 13 EAEPDVVVVGSSNTDLIGYVDRmPQVGETLhGTSF----HKGFGGKGANQAVMASKLGAKVAMVGMVGTDGFGSDTIKNF 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113514 466 LTKS-SLQHTIVEKSNFTSCSYTAINDCNGN---LLLAGADMAIMENLSYSEIKDDLNDAKYICFDGNISPSLMLDitTS 541
Cdd:PTZ00292 89 KRNGvNTSFVSRTENSSTGLAMIFVDTKTGNneiVIIPGANNALTPQMVDAQTDNIQNICKYLICQNEIPLETTLD--AL 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113514 542 KSSKQR---VVFEPTSGPKTLKILKVLSVAS-IDFITPNkfeldvlfqamkdgnffENESwwqklnsfgitssfyneier 617
Cdd:PTZ00292 167 KEAKERgcyTVFNPAPAPKLAEVEIIKPFLKyVSLFCVN-----------------EVEA-------------------- 209
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113514 618 fTKSTGIEEITENGILQKCFHLLPF-IKNIIVKLGPNGALLISSEklqgvnsnsaslftpgNVTVKyypVPKVIATPVNA 696
Cdd:PTZ00292 210 -ALITGMEVTDTESAFKASKELQQLgVENVIITLGANGCLIVEKE----------------NEPVH---VPGKRVKAVDT 269
|
330 340 350
....*....|....*....|....*....|....*..
gi 19113514 697 SGTGDTFIGTFTALLSKGWGMDDAIDTAQKAAGLTLQ 733
Cdd:PTZ00292 270 TGAGDCFVGSMAYFMSRGKDLKESCKRANRIAAISVT 306
|
|
| RfaE_like |
cd01172 |
RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the ... |
613-730 |
2.63e-06 |
|
RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose. LPS plays an important role in maintaining the structural integrity of the bacterial outer membrane of gram-negative bacteria. RfaE consists of two domains, a sugar kinase domain, represented here, and a domain belonging to the cytidylyltransferase superfamily.
Pssm-ID: 238577 [Multi-domain] Cd Length: 304 Bit Score: 49.87 E-value: 2.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113514 613 NEIErFTKSTGIEEITENGILQKC---FHLLPFiKNIIVKLGPNGALLISSEKlqgvnsnsaslftpgnvtvKYYPVPKV 689
Cdd:cd01172 188 NEKE-AREALGDEINDDDELEAAGeklLELLNL-EALLVTLGEEGMTLFERDG-------------------EVQHIPAL 246
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 19113514 690 IATPVNASGTGDTFIGTFTALLSKGWGMDDAIDTAQKAAGL 730
Cdd:cd01172 247 AKEVYDVTGAGDTVIATLALALAAGADLEEAAFLANAAAGV 287
|
|
| RfaE |
COG2870 |
ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell wall/membrane ... |
613-731 |
7.14e-05 |
|
ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442117 [Multi-domain] Cd Length: 321 Bit Score: 45.57 E-value: 7.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113514 613 NEIErFTKSTGIEEITENGILQKCFHLL--PFIKNIIVKLGPNGAllisseklqgvnsnsaSLFTPGNVtvkYYPVPKVI 690
Cdd:COG2870 205 NLKE-AEAAVGIPIADEEELVAAAAELLerLGLEALLVTRGEEGM----------------TLFDADGP---PHHLPAQA 264
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 19113514 691 ATPVNASGTGDTFIGTFTALLSKGWGMDDAIDTAQKAAGLT 731
Cdd:COG2870 265 REVFDVTGAGDTVIATLALALAAGASLEEAAELANLAAGIV 305
|
|
| ribokinase_pfkB_like |
cd00287 |
ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including ... |
392-711 |
8.02e-05 |
|
ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Pssm-ID: 238177 [Multi-domain] Cd Length: 196 Bit Score: 44.39 E-value: 8.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113514 392 EVVCVGSVSIDSVLKLDNPLTSkfLGTSHPCHSEQAFGGVAHNMALASSLMGASTKLVscvgtksvptssikeyltkssl 471
Cdd:cd00287 1 RVLVVGSLLVDVILRVDALPLP--GGLVRPGDTEERAGGGAANVAVALARLGVSVTLV---------------------- 56
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113514 472 qhtiveksnftscsytaindcngnlllaGADMAIMENLSYSEikDDLNDAKYICFDGNIspslmldittsksskqRVVFE 551
Cdd:cd00287 57 ----------------------------GADAVVISGLSPAP--EAVLDALEEARRRGV----------------PVVLD 90
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113514 552 PTSGPKTLK---ILKVLSVAsiDFITPNKFELDVLfqamkdgnffeneswwqklnsfgitssfyneierftksTGIEEIT 628
Cdd:cd00287 91 PGPRAVRLDgeeLEKLLPGV--DILTPNEEEAEAL--------------------------------------TGRRDLE 130
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113514 629 ENGILQKCFHLL-PFIKNIIVKLGPNGALLisseklqgvnsnsaslFTPGNVTVkyyPVPKVIATPVNASGTGDTFIGTF 707
Cdd:cd00287 131 VKEAAEAAALLLsKGPKVVIVTLGEKGAIV----------------ATRGGTEV---HVPAFPVKVVDTTGAGDAFLAAL 191
|
....
gi 19113514 708 TALL 711
Cdd:cd00287 192 AAGL 195
|
|
| |
