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Conserved domains on  [gi|24654378|ref|NP_611199|]
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uncharacterized protein Dmel_CG10953, isoform A [Drosophila melanogaster]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK12323 super family cl46901
DNA polymerase III subunit gamma/tau;
39-263 2.94e-11

DNA polymerase III subunit gamma/tau;


The actual alignment was detected with superfamily member PRK12323:

Pssm-ID: 481241 [Multi-domain]  Cd Length: 700  Bit Score: 63.36  E-value: 2.94e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378   39 APVYQPAPAPVYQPAPAPVVIPAPAPAPVVIPAPAPAPVVIPAPAPVKTYVPPAPISIPAPVYQPAPAPIRIPAPVYQPA 118
Cdd:PRK12323 372 AGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPA 451

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378  119 PAPISIPAPAPIEIPAPAPvntyippapapapvyqPAPAPIPVSIPAPAPVYQPAPAPVVIPAPAPAPVVIPAPAPAPVV 198
Cdd:PRK12323 452 PAPAAAPAAAARPAAAGPR----------------PVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPD 515

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 24654378  199 iPAPAPVKSYVPPAPISIPAPAPVYQPAPISIPAPAPVYQPAPAPVYQPTNTQVLEEIEPASNDG 263
Cdd:PRK12323 516 -AAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDG 579
GYR pfam02756
GYR motif; The GYR motif is found in several drosophila proteins. Its function is unknown, ...
 261-277 1.98e-07

GYR motif; The GYR motif is found in several drosophila proteins. Its function is unknown, however the presence of completely conserved tyrosine residues may suggest it could be a substrate for tyrosine kinases.


:

Pssm-ID: 426962  Cd Length: 18  Bit Score: 46.06  E-value: 1.98e-07
                          10
                  ....*....|....*..
gi 24654378   261 NDGYRYKTVRRRVYRHR 277
Cdd:pfam02756   1 DDGYRYKTVRRLKYRHR 17
 
Name Accession Description Interval E-value
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
39-263 2.94e-11

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 63.36  E-value: 2.94e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378   39 APVYQPAPAPVYQPAPAPVVIPAPAPAPVVIPAPAPAPVVIPAPAPVKTYVPPAPISIPAPVYQPAPAPIRIPAPVYQPA 118
Cdd:PRK12323 372 AGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPA 451

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378  119 PAPISIPAPAPIEIPAPAPvntyippapapapvyqPAPAPIPVSIPAPAPVYQPAPAPVVIPAPAPAPVVIPAPAPAPVV 198
Cdd:PRK12323 452 PAPAAAPAAAARPAAAGPR----------------PVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPD 515

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 24654378  199 iPAPAPVKSYVPPAPISIPAPAPVYQPAPISIPAPAPVYQPAPAPVYQPTNTQVLEEIEPASNDG 263
Cdd:PRK12323 516 -AAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDG 579
GYR pfam02756
GYR motif; The GYR motif is found in several drosophila proteins. Its function is unknown, ...
 261-277 1.98e-07

GYR motif; The GYR motif is found in several drosophila proteins. Its function is unknown, however the presence of completely conserved tyrosine residues may suggest it could be a substrate for tyrosine kinases.


Pssm-ID: 426962  Cd Length: 18  Bit Score: 46.06  E-value: 1.98e-07
                          10
                  ....*....|....*..
gi 24654378   261 NDGYRYKTVRRRVYRHR 277
Cdd:pfam02756   1 DDGYRYKTVRRLKYRHR 17
GYR smart00713
Motif of unknown function with conserved Gly, Tyr, Arg tripeptide in Drosophila proteins;
261-278 1.73e-06

Motif of unknown function with conserved Gly, Tyr, Arg tripeptide in Drosophila proteins;


Pssm-ID: 128953 [Multi-domain]  Cd Length: 18  Bit Score: 43.53  E-value: 1.73e-06
                           10
                   ....*....|....*...
gi 24654378    261 NDGYRYKTVRRRVYRHRF 278
Cdd:smart00713   1 DDGYRYKTVRRLKLRHRR 18
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 27-87 1.32e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 39.88  E-value: 1.32e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 24654378    27 PPAPAPVYQPAPAPVYQPAPAPVYQPAPAPVVIP-APAPAPVVIPAPAPAPVVIPAPAPVKT 87
Cdd:TIGR00601  86 PPAATPTSAPTPTPSPPASPASGMSAAPASAVEEkSPSEESATATAPESPSTSVPSSGSDAA 147
PspC_subgroup_1 NF033838
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ...
 43-113 6.06e-03

pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.


Pssm-ID: 468201 [Multi-domain]  Cd Length: 684  Bit Score: 38.07  E-value: 6.06e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 24654378   43 QPAPAPVYQPAPAPvviPAPAPAPVViPAPAPAPVVIPAPAPVKTYVPPAPISIPAPVYQPAPAPIRIPAP 113
Cdd:NF033838 415 KPAEQPQPAPAPQP---EKPAPKPEK-PAEQPKAEKPADQQAEEDYARRSEEEYNRLTQQQPPKTEKPAQP 481
 
Name Accession Description Interval E-value
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
39-263 2.94e-11

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 63.36  E-value: 2.94e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378   39 APVYQPAPAPVYQPAPAPVVIPAPAPAPVVIPAPAPAPVVIPAPAPVKTYVPPAPISIPAPVYQPAPAPIRIPAPVYQPA 118
Cdd:PRK12323 372 AGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPA 451

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378  119 PAPISIPAPAPIEIPAPAPvntyippapapapvyqPAPAPIPVSIPAPAPVYQPAPAPVVIPAPAPAPVVIPAPAPAPVV 198
Cdd:PRK12323 452 PAPAAAPAAAARPAAAGPR----------------PVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPD 515

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 24654378  199 iPAPAPVKSYVPPAPISIPAPAPVYQPAPISIPAPAPVYQPAPAPVYQPTNTQVLEEIEPASNDG 263
Cdd:PRK12323 516 -AAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDG 579
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
26-203 2.22e-09

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 57.96  E-value: 2.22e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378   26 SPPAPAPVYQPAPAPVYQPAPAPVYQPA-------PAPVVIPAPAPAPVVIPAPAPAPVVIPAPAPVKTYVPPAPISIPA 98
Cdd:PRK12323 393 AAAAPAPAAPPAAPAAAPAAAAAARAVAaaparrsPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPV 472

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378   99 PVYQPAPAPIRIPAPVYQPAPAPISIPAPAPIEIPAPAPVNTyippapapapvYQPAPAPIPVSIPAPAPVYQPAPAPVV 178
Cdd:PRK12323 473 AAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQP-----------DAAPAGWVAESIPDPATADPDDAFETL 541

                        170       180
                 ....*....|....*....|....*
gi 24654378  179 IPAPAPAPVVIPAPAPAPVVIPAPA 203
Cdd:PRK12323 542 APAPAAAPAPRAAAATEPVVAPRPP 566
rne PRK10811
ribonuclease E; Reviewed
 48-244 2.35e-09

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 57.74  E-value: 2.35e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378    48 PVYQPAPAPVV----IPAPAPAPVVIPAPAPAPVVIPAPAPVktyvppAPISIPAPVYQPAPAPIRIPAPVYQPAPAPIS 123
Cdd:PRK10811  846 PVVRPQDVQVEeqreAEEVQVQPVVAEVPVAAAVEPVVSAPV------VEAVAEVVEEPVVVAEPQPEEVVVVETTHPEV 919

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378   124 IPAPAPIEIPAPAPVNTYIPPAPAPAPVYQPAPAPIPVSIPAPAPVyqpAPAPVVIPAPAPAPVViPAPAPAPVVIPAPA 203
Cdd:PRK10811  920 IAAPVTEQPQVITESDVAVAQEVAEHAEPVVEPQDETADIEEAAET---AEVVVAEPEVVAQPAA-PVVAEVAAEVETVT 995

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 24654378   204 PVKSYVPPAPISIPAPAPVYQPAPISiPAPAPVYQPAPAPV 244
Cdd:PRK10811  996 AVEPEVAPAQVPEATVEHNHATAPMT-RAPAPEYVPEAPRH 1035
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 30-200 3.32e-09

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 57.18  E-value: 3.32e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378   30 PAPVYQPAPAPVYQPAPAPVYQPAPAPVVIPAPAPAPVVIPAPAPAPVVIPAPAPVKTYVPPAPISIPAPVYQPAPAPIR 109
Cdd:PRK07994 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKK 440

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378  110 IPapvyqpapapisiPAPAPIEIPAPAPVNTYIPPAPAPAPVYQPAPAPIPVSIPAPAPVYQPAPAPVVIPAPAPAPVVI 189
Cdd:PRK07994 441 SE-------------PAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALEHE 507

                        170
                 ....*....|.
gi 24654378  190 PAPAPAPVVIP 200
Cdd:PRK07994 508 KTPELAAKLAA 518
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 26-187 8.49e-09

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 56.03  E-value: 8.49e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378   26 SPPAPAPVYQPAPAPvyqpaPAPVYQPAPAPVVIPAPAPAPVVIPAPAPAPVVIPAPAPVKTYVPPAPISIPAPVYQPAP 105
Cdd:PRK07994 362 AAPLPEPEVPPQSAA-----PAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGAT 436

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378  106 APIRIpapvyQPAPAPISIPAPAPIEIPAPAPVNTYIPPAPAPAPVYQPAPAPIPVSIPAPAPVYQPAPAPVVIPAPAPA 185
Cdd:PRK07994 437 KAKKS-----EPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKTPE 511


                 ..
gi 24654378  186 PV 187
Cdd:PRK07994 512 LA 513
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 26-140 1.07e-08

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 55.49  E-value: 1.07e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378   26 SPPAPAPVYQPAPAPVYQPAPAPVYQPAPAPVVIPAPAPAPVVIPAPAPAPVVIpAPAPVKTYVPPAPISIPAPVYQPAP 105
Cdd:PRK14951 379 KTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAA-APAAAPAAAPAAVALAPAPPAQAAP 457

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 24654378  106 APIRIPAPVyQPAPAPISIPAPapieiPAPAPVNT 140
Cdd:PRK14951 458 ETVAIPVRV-APEPAVASAAPA-----PAAAPAAA 486
rne PRK10811
ribonuclease E; Reviewed
 4-209 2.26e-08

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 55.05  E-value: 2.26e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378     4 LVVAFAVLACAYGDVsHLGYDYSPPAPAPVYQ--PAPAPVYQPAPAPVYQPAPAPVVIPAPAPAPVVIPAPAPAPVVIPA 81
Cdd:PRK10811  827 LTVACASPEMASGKV-WIRYPVVRPQDVQVEEqrEAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQ 905

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378    82 PAPVKTYVPPAPISIPAPVYQPaPAPIRIPAPVYQPAPAPISIPAPAPIEIPAPAPVNTYIPPAPAPAPVYQPAPAPIPV 161
Cdd:PRK10811  906 PEEVVVVETTHPEVIAAPVTEQ-PQVITESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVV 984

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 24654378   162 SIPAPAPVYQPAPAPVVIPAPAPAPVV----IPAP---APAPVVIPAPAPVKSYV 209
Cdd:PRK10811  985 AEVAAEVETVTAVEPEVAPAQVPEATVehnhATAPmtrAPAPEYVPEAPRHSDWQ 1039
PHA03247 PHA03247
large tegument protein UL36; Provisional
 27-259 7.31e-08

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 53.40  E-value: 7.31e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378    27 PPAPAPVYQPAPAPVYQPAPAPVYQPAPAPVVIPAPAP-APVVIPAPAPAPVVIPAPAPVKTYVPPAPISIpapvyqpap 105
Cdd:PHA03247 2685 RRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPpGPAAARQASPALPAAPAPPAVPAGPATPGGPA--------- 2755

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378   106 APIRIPAPVYQPAPAPISIPAPAPIEIPAPAPVNTYIPPAPAPAPVYQPAPAPIPVSIPAPAPVYQPAPAPVVIPAPAPA 185
Cdd:PHA03247 2756 RPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQ 2835

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 24654378   186 PVvipAPAPAPVVIPAPAPVKSYVPPAPISIPAPAPVYQPAPISIPAPAPVYQPAPAPVYQPTNTQVLEEIEPA 259
Cdd:PHA03247 2836 PT---APPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPE 2906
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 53-178 1.37e-07

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 52.41  E-value: 1.37e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378   53 APAPVVIPAPAPAPVVIPAPAPAPVVIPAPAPVKTYVPPAPISIPAPVYQPAPAPIRIPAPVYQPAPAPISIPAPAPIEI 132
Cdd:PRK14951 370 AEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAP 449

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 24654378  133 PAPAPvntyipPAPAPAPVYQPAPAPIPVSIPAPAPVYQPAPAPVV 178
Cdd:PRK14951 450 APPAQ------AAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLT 489
GYR pfam02756
GYR motif; The GYR motif is found in several drosophila proteins. Its function is unknown, ...
 261-277 1.98e-07

GYR motif; The GYR motif is found in several drosophila proteins. Its function is unknown, however the presence of completely conserved tyrosine residues may suggest it could be a substrate for tyrosine kinases.


Pssm-ID: 426962  Cd Length: 18  Bit Score: 46.06  E-value: 1.98e-07
                          10
                  ....*....|....*..
gi 24654378   261 NDGYRYKTVRRRVYRHR 277
Cdd:pfam02756   1 DDGYRYKTVRRLKYRHR 17
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 103-253 1.66e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 48.94  E-value: 1.66e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378  103 PAPAPIRIPAPVYQPAPAPISIPAPAPIEIPAPAPvntyippapapapVYQPAPAPIPVSIPAPAPVYQPAPApvvipAP 182
Cdd:PRK14951 373 AAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAP-------------AAAASAPAAPPAAAPPAPVAAPAAA-----AP 434

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 24654378  183 APAPVVIPAPAPAPVVIPAPAPVKSYVPPAPISIPAPAPVYQPAPISIPAPAPVYQPAPAPVYQPTNTQVL 253
Cdd:PRK14951 435 AAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEEGDVWHATVQQLA 505
GYR smart00713
Motif of unknown function with conserved Gly, Tyr, Arg tripeptide in Drosophila proteins;
261-278 1.73e-06

Motif of unknown function with conserved Gly, Tyr, Arg tripeptide in Drosophila proteins;


Pssm-ID: 128953 [Multi-domain]  Cd Length: 18  Bit Score: 43.53  E-value: 1.73e-06
                           10
                   ....*....|....*...
gi 24654378    261 NDGYRYKTVRRRVYRHRF 278
Cdd:smart00713   1 DDGYRYKTVRRLKLRHRR 18
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 27-137 2.99e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 48.44  E-value: 2.99e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378   27 PPAPAPVYQPAPAPVYQPAPAPvyQPAPAPvviPAPAPAPVVIPAPAPAPVVIPAPAPVKTYVPPAPISIPAPVYQPAPA 106
Cdd:PRK07764 387 VAGGAGAPAAAAPSAAAAAPAA--APAPAA---AAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAA 461

                         90       100       110
                 ....*....|....*....|....*....|.
gi 24654378  107 PIRIPAPVYQPAPAPISIPAPAPIEIPAPAP 137
Cdd:PRK07764 462 PSAQPAPAPAAAPEPTAAPAPAPPAAPAPAA 492
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 24-112 3.20e-06

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 48.35  E-value: 3.20e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378    24 DYSPPA-PAPVYQPAPAPVYQPAPAPVYQPAPAPVVIPAPAPAPVVIPAPAPAPVVIPAPAPVKTYVPPAPISIPAPVYQ 102
Cdd:PRK12270   35 DYGPGStAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVE 114

                          90
                  ....*....|
gi 24654378   103 PAPAPIRIPA 112
Cdd:PRK12270  115 DEVTPLRGAA 124
PHA03247 PHA03247
large tegument protein UL36; Provisional
 26-252 3.98e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 48.01  E-value: 3.98e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378    26 SPPAPAPVYQPAPAPVYQPAPAPVYQPAPAPVVIPAPAPAPVVIP---APAPAPVVIPAPAPVKTYVPPAPISIPAPVYQ 102
Cdd:PHA03247 2607 DPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERprdDPAPGRVSRPRRARRLGRAAQASSPPQRPRRR 2686

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378   103 PAPAPIRIPAPVYQPaPAPISIPAPAPIEIPAPAPVNTYIPPAPAPAPVYQPAPAPIPVSIPAPAPVYQPAPAPVVIPAP 182
Cdd:PHA03247 2687 AARPTVGSLTSLADP-PPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAG 2765

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378   183 APAPVVIPAPAPAPVVIPAPAPVKSYVPPAPISIPAPAPVYQPAPISIPAPAPVYQPAPAPVYQPTNTQV 252
Cdd:PHA03247 2766 PPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQ 2835
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 118-244 5.76e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 47.40  E-value: 5.76e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378  118 APAPISIPAPAPIEIPAPAPvntyippapapAPVYQPAPAPIPVSIPAPAPVYQPAPAPVVIPAPAPA---PVVIPAPAP 194
Cdd:PRK14951 370 AEAAAPAEKKTPARPEAAAP-----------AAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVaapAAAAPAAAP 438

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 24654378  195 APVVIPAPAPVKSYVPPAPISIPAPAPVYQPAPISIPAPAPVYQPAPAPV 244
Cdd:PRK14951 439 AAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARL 488
PHA03247 PHA03247
large tegument protein UL36; Provisional
 26-243 6.40e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 47.63  E-value: 6.40e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378    26 SPPAPAPVYQPAPaPVYQPAPAPVYQPAPAPVVIPAPAPAPVVIPAPAPAPVVIPAPAPVKTYVPPAPISIPAPVYQPAP 105
Cdd:PHA03247 2759 RPPTTAGPPAPAP-PAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPT 2837

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378   106 APIRIPAPVYQPAPA-------------PISIPAPAPIEIPAPAPVNTYIPPAPAPAPVYQPAPAPIPVSIPAPA----P 168
Cdd:PHA03247 2838 APPPPPGPPPPSLPLggsvapggdvrrrPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQapppP 2917

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 24654378   169 VYQPAPAPVVIPAPAPAPVVIPAPAPAPVVIPAPAPVKSYVPPAPISIPAPAPVYQPAPISIPAPAPVyQPAPAP 243
Cdd:PHA03247 2918 QPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPS-REAPAS 2991
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 60-196 7.74e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 47.02  E-value: 7.74e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378   60 PAPAPAPVVIPAPAPAPVVIPAPAPVktyvppapisipapvyqPAPAPIRIPAPVYQPAPAPISIPAPAPIEIPAPAPVN 139
Cdd:PRK14951 373 AAPAEKKTPARPEAAAPAAAPVAQAA-----------------AAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPA 435

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 24654378  140 TYIPPAPAPAPVYQPAPAPIPVSIPAPAPVYQPAPAPVVIPAPAPAPVVIPAPAPAP 196
Cdd:PRK14951 436 AAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTE 492
PHA03247 PHA03247
large tegument protein UL36; Provisional
 27-247 9.39e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 46.86  E-value: 9.39e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378    27 PPAPAPVYQPAPAPVYQ-----PAPAPVYQPAPAPVVIPAPAPAPVVIPAPAPAPVVIPAPAPVKTYVPPAPISIPAPVY 101
Cdd:PHA03247 2701 PPPPPPTPEPAPHALVSatplpPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPP 2780

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378   102 QPAPAPIRIPAPVYQPAPAPISIPAPAPIEIPAPAPVntyIPPAPAPAPVYQPAPAPIPVSIPAPAPVYQPAPAP--VVI 179
Cdd:PHA03247 2781 RRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAA---LPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLggSVA 2857

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 24654378   180 PAPAPAPVVIPAPAPAPVVIPAPAPVKSYVPPAPISIPAPAPVYQPAPISIPAPAPVYQPAPAPVYQP 247
Cdd:PHA03247 2858 PGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPP 2925
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
22-111 1.16e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 46.31  E-value: 1.16e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378   22 GYDYSPP-APAPVYQPA---PAPVYQPAPAPVYQPAPAPVVIPAPAPAPVVIPAPAPAPVVIPAPAPVKTYVPPAPISIP 97
Cdd:PRK14971 366 GDDASGGrGPKQHIKPVftqPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVNPPSTAPQ 445

                         90
                 ....*....|....
gi 24654378   98 APVYQPAPAPIRIP 111
Cdd:PRK14971 446 AVRPAQFKEEKKIP 459
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 52-263 1.69e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 46.13  E-value: 1.69e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378   52 PAPAPVVIPAPAPAPVVIPAPAPAPVVIPAPAPVKTYVPPAPISIPAPVYQPAPAPIRIPAPVYQPAPAPISIPAPAPIE 131
Cdd:PRK07764 593 GAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAK 672

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378  132 IPAPAPVNTYIPPAPAPAPVYQPAPAPIPVSIPAPAPVYQPAPAPVVIPAPAPAPVVIPAPAPAPVVIPAPAPvksyvpp 211
Cdd:PRK07764 673 AGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEP------- 745

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 24654378  212 aPISIPAPAPVYQPAPISIPAPAPVYQPAPAPVYQPTNTQVLEEIEPASNDG 263
Cdd:PRK07764 746 -DDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDDE 796
PRK12727 PRK12727
flagellar biosynthesis protein FlhF;
64-262 2.01e-05

flagellar biosynthesis protein FlhF;


Pssm-ID: 237182 [Multi-domain]  Cd Length: 559  Bit Score: 45.75  E-value: 2.01e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378   64 PAPVVIPAPAPAPVVIPaPAPVKTYVPPAPISIPAPVYQPAPAPIRIPAPV--YQPAPAPISIPAPAPIEIPAPAPVNTY 141
Cdd:PRK12727  63 PATAAAPAPAPQAPTKP-AAPVHAPLKLSANANMSQRQRVASAAEDMIAAMalRQPVSVPRQAPAAAPVRAASIPSPAAQ 141

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378  142 IPPAPAPAPVYQPAPAPIPVsipAPAPVYQPAPAPVVIPAPAPAPVVIPAPAPAPVVIPAPAPVKSYVPPAPISIPAPAP 221
Cdd:PRK12727 142 ALAHAAAVRTAPRQEHALSA---VPEQLFADFLTTAPVPRAPVQAPVVAAPAPVPAIAAALAAHAAYAQDDDEQLDDDGF 218

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 24654378  222 VYQPAPISIPAPAPVYQPAPAPVYQPTNTQVLEEIEPASND 262
Cdd:PRK12727 219 DLDDALPQILPPAALPPIVVAPAAPAALAAVAAAAPAPQND 259
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 59-204 3.71e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 44.98  E-value: 3.71e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378   59 IPAPAPAPVVIPAPAPAPVVIPAPAPvktyvppapisipapvyqPAPAPIRIPAPVYQPAPAPISIPAPAPIEIPAPAPV 138
Cdd:PRK07764 385 LGVAGGAGAPAAAAPSAAAAAPAAAP------------------APAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAG 446

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 24654378  139 NTYIPPAPAPAPVYQPAPAPIPVSIPAPAPVYQPAPAPVVIPAPAPAPVVIPAPAPAPVVIPAPAP 204
Cdd:PRK07764 447 NAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAATL 512
PHA03247 PHA03247
large tegument protein UL36; Provisional
 26-252 3.94e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 44.93  E-value: 3.94e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378    26 SPPAPAPVYQPAPAPVYQPAPAPVYQPAPAPVVIP---APAPAPVVIP-------------APAPAPVVIPAPAPVKTYV 89
Cdd:PHA03247 2617 LPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERprdDPAPGRVSRPrrarrlgraaqasSPPQRPRRRAARPTVGSLT 2696

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378    90 PPAPISIPAPVYQPAPAPIrIPAPVYQPAPAPISIPAPAPIEIPAPAPVNTYIPPAPAPAPVYQPAPAPIPVSIPAPAPv 169
Cdd:PHA03247 2697 SLADPPPPPPTPEPAPHAL-VSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAA- 2774

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378   170 yQPAPAPVVIPAPAPAPVVIPAPAPAPVVIPAPAPVKSYVPPAPISIPAPAPVYQPAPISIPAPAPVYQPAPAPVYQPTN 249
Cdd:PHA03247 2775 -PAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLG 2853


                  ...
gi 24654378   250 TQV 252
Cdd:PHA03247 2854 GSV 2856
rne PRK10811
ribonuclease E; Reviewed
 102-261 4.02e-05

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 45.03  E-value: 4.02e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378   102 QPAPAPIRIPAPVYQPAPAPISIPAPAPIEIPAPAPVNTYIPPAPAPAPVYQPAPAPIPVSIPAPAPVYQPAPAPVVIP- 180
Cdd:PRK10811  863 EVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHPEVIAAPVTEQPQVITESDVAVAQEv 942

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378   181 APAPAPVVIPAPAPAPV--------VIPAPAPVKSYVPPAPISIPAPAPVYQPAPISIPAPAPVYQP------------- 239
Cdd:PRK10811  943 AEHAEPVVEPQDETADIeeaaetaeVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPEAtvehnhatapmtr 1022

                         170       180
                  ....*....|....*....|..
gi 24654378   240 APAPVYQPTNTQVLEEIEPASN 261
Cdd:PRK10811 1023 APAPEYVPEAPRHSDWQRPTFA 1044
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 27-205 4.60e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 44.59  E-value: 4.60e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378   27 PPAPAPVYQPAPAPVYQPAPAPVYQPAPAPVVIPAPAPAPVVIPAPAPAPVVIPAPAPVKTYVPPAPISIPAPVYQPAPA 106
Cdd:PRK07764 615 PAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPA 694

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378  107 PIRIPAPVYQPAPAPISIPAPAPIEIPAPAPVNTYIPPAPAPAPVYQPAPAPIPVSIPAPAPVYQPAPAPVVIPAPAPAP 186
Cdd:PRK07764 695 GAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAP 774

                        170
                 ....*....|....*....
gi 24654378  187 VVIPAPAPAPVVIPAPAPV 205
Cdd:PRK07764 775 PPSPPSEEEEMAEDDAPSM 793
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
30-121 6.30e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 44.00  E-value: 6.30e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378   30 PAPVYQPAPAPVYQPAPAPVY----QPAPAPVVIPAPAPAPVVIPAPAPAPVVIPAPAPVKTYVPPAPISIPAPVYQPAP 105
Cdd:PRK14971 386 PAAAPQPSAAAAASPSPSQSSaaaqPSAPQSATQPAGTPPTVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVSS 465

                         90
                 ....*....|....*.
gi 24654378  106 APIRIPAPVYQPAPAP 121
Cdd:PRK14971 466 LGPSTLRPIQEKAEQA 481
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 26-197 1.24e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 43.44  E-value: 1.24e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378   26 SPPAPAPVYQPAPAPVYQPAPAPVYQPAPAPVVIPAPAPAPVVIPAPAPAPVVIPAPAPVKTYVPPAPISIPAPVYQPAP 105
Cdd:PRK07764 622 AAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQP 701

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378  106 APIRIPAPVYQPAPAPISIPAPAPIEIPAPAPVNTYIPPAPAPAPVYQPAPAPIPVSIPAPAPVYQPAPAPVVIPAPAPA 185
Cdd:PRK07764 702 APAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSE 781

                        170
                 ....*....|..
gi 24654378  186 PVVIPAPAPAPV 197
Cdd:PRK07764 782 EEEMAEDDAPSM 793
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 34-117 1.50e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 42.96  E-value: 1.50e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378    34 YQPAPAPVYQPAPAPVYQPAPAPVVIPAPAPAPVVIPAPAPAPVVIPAPAPVKTYVPPAPISIPAPVYQPAPAPIRIPAP 113
Cdd:PRK12270   36 YGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVED 115


                  ....
gi 24654378   114 VYQP 117
Cdd:PRK12270  116 EVTP 119
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
28-195 2.03e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 42.53  E-value: 2.03e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378   28 PAPAPVYQPAPAPVYQPAPAPVyqpAPAPVVIPAPAPAPVVIPAPAPAPVVIPAPAPVKTyVPPAPISIPAPVYQPAPAP 107
Cdd:PRK07003 381 PAPGARAAAAVGASAVPAVTAV---TGAAGAALAPKAAAAAAATRAEAPPAAPAPPATAD-RGDDAADGDAPVPAKANAR 456

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378  108 IRIPAPVYQPAPAPISIPAPApIEIPAPAPVNTYIPPAPAPAPVYQPAPAPIPVSIPAPAPVYQPAPAPVVIPAPAPAPV 187
Cdd:PRK07003 457 ASADSRCDERDAQPPADSGSA-SAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPP 535


                 ....*...
gi 24654378  188 VIPAPAPA 195
Cdd:PRK07003 536 TPAAAAPA 543
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 60-205 2.92e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 42.01  E-value: 2.92e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378   60 PAPAPAPVVIPAPAPAPVVIPAPAPVKtyvppapisipapvyQPAPAPIRIPApvyqPAPAPISIPAPAPIEIPAPAPVn 139
Cdd:PRK14951 367 AAAAEAAAPAEKKTPARPEAAAPAAAP---------------VAQAAAAPAPA----AAPAAAASAPAAPPAAAPPAPV- 426

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 24654378  140 tyiPPAPAPAPVYQPAPAPIPVSIPAPAPVyQPAPAPVVIPAPAPAPVVIPAPAPAPVVIPAPAPV 205
Cdd:PRK14951 427 ---AAPAAAAPAAAPAAAPAAVALAPAPPA-QAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARL 488
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 21-233 3.84e-04

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 41.99  E-value: 3.84e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378    21 LGYDYSPPAPAPVYQPAPA-----PVYQPAPAPvYQPAPAPVVIPAPAPAPVVIPAPAPAPVVIPAPAPVKTYVPPAPIS 95
Cdd:PRK10263  347 ASVDVPPAQPTVAWQPVPGpqtgePVIAPAPEG-YPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAP 425

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378    96 IPAPVY-QPAPAPIRIPAPVYQPAPAPISIPAPAPIEIPAP------APVNTYIPPAPAPAPVYQPAPAPIPVSIPAPAP 168
Cdd:PRK10263  426 EQPAQQpYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQtyqqpaAQEPLYQQPQPVEQQPVVEPEPVVEETKPARPP 505

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378   169 VY--------------------QPAPAPVVIP------APAPAPVVIPAPAPAPVVIPAPAPVKSYVPPAPISIPAPAPV 222
Cdd:PRK10263  506 LYyfeeveekrarereqlaawyQPIPEPVKEPepikssLKAPSVAAVPPVEAAAAVSPLASGVKKATLATGAAATVAAPV 585

                         250
                  ....*....|.
gi 24654378   223 YQPAPISIPAP 233
Cdd:PRK10263  586 FSLANSGGPRP 596
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 71-244 4.43e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 41.39  E-value: 4.43e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378   71 APAPAPVVIPAPAPvktyvppapisipapvyqPAPAPIRIPAPVYQPAPAPISIPAPAPIEIPAPAPVntyIPPAPAPAP 150
Cdd:PRK07994 363 APLPEPEVPPQSAA------------------PAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPA---VPLPETTSQ 421

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378  151 VYQPAPAPIPVSIPAPAPVYQPAPAPVVIPAPAPAPVViPAPAPAPVVIPAPAPVKSYVPPAPISIPAPAPVYQPAPiSI 230
Cdd:PRK07994 422 LLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERL-ASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATP-KA 499

                        170
                 ....*....|....
gi 24654378  231 PAPAPVYQPAPAPV 244
Cdd:PRK07994 500 LKKALEHEKTPELA 513
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
27-140 7.37e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 40.63  E-value: 7.37e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378   27 PPAPAPVYQPAPAPVYQPAPAPVYQPAPAPVVIPAPAPAPVVIPAPAPAPV-VIPAPAPVKTYVPPAPISIPAPVYQPAP 105
Cdd:PRK12323 464 PAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPdAAPAGWVAESIPDPATADPDDAFETLAP 543

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 24654378  106 APIRIPAPVYQPAPAPISIPAPAPIEIPAPAPVNT 140
Cdd:PRK12323 544 APAAAPAPRAAAATEPVVAPRPPRASASGLPDMFD 578
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 45-137 8.58e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 40.56  E-value: 8.58e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378   45 APAPVYQPAPAPVVIPAPA-PAPVVIPAPAPAPVVIPAPAPVKTYVPPAPISIPAPVYQPAPAPIRIPapvyqPAPAPIS 123
Cdd:PRK14950 361 VPVPAPQPAKPTAAAPSPVrPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESA-----PKLTRAA 435

                         90
                 ....*....|....
gi 24654378  124 IPAPAPIEIPAPAP 137
Cdd:PRK14950 436 IPVDEKPKYTPPAP 449
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 164-247 8.66e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 40.74  E-value: 8.66e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378  164 PAPAPVyQPAPAPVVIPAPAPAPVVIPAPAPAPVVIPAPAPVKSYVPPAPISIPAPAPVYQPAPISIPAPAPVYQPAPAP 243
Cdd:PRK07764 406 PAAAPA-PAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAP 484


                 ....
gi 24654378  244 VYQP 247
Cdd:PRK07764 485 PAAP 488
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 115-196 1.05e-03

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 40.26  E-value: 1.05e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378   115 YQPAPAPISIPAPAPieiPAPAPVNTYIPPAPAPAPVYQPAPAPIPVSIPAPAPVYQPAPAPVVIPAPAPAPVVIPAPAP 194
Cdd:PRK12270   36 YGPGSTAAPTAAAAA---AAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAA 112


                  ..
gi 24654378   195 AP 196
Cdd:PRK12270  113 VE 114
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 27-87 1.32e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 39.88  E-value: 1.32e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 24654378    27 PPAPAPVYQPAPAPVYQPAPAPVYQPAPAPVVIP-APAPAPVVIPAPAPAPVVIPAPAPVKT 87
Cdd:TIGR00601  86 PPAATPTSAPTPTPSPPASPASGMSAAPASAVEEkSPSEESATATAPESPSTSVPSSGSDAA 147
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 50-137 1.36e-03

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 40.26  E-value: 1.36e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378    50 YQPAPAPVVIPAPAPAPVVIPAPAPAPVVIPAPAPVKTyvppapisipapvYQPAPAPIRIPAPVYQPAPAPISIPAPAP 129
Cdd:PRK12270   36 YGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPA-------------PPAAAAPAAPPKPAAAAAAAAAPAAPPAA 102


                  ....*...
gi 24654378   130 IEIPAPAP 137
Cdd:PRK12270  103 AAAAAPAA 110
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 160-258 1.58e-03

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 39.87  E-value: 1.58e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378   160 PVSIPAPAPVYQPAPAPVVIPAPAPAPVVIPAPAPAPVVIPAPAPVKSyvppapisipapapvyqpapisiPAPAPVYQP 239
Cdd:PRK12270   44 PTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAA-----------------------AAAAPAAPP 100

                          90
                  ....*....|....*....
gi 24654378   240 APAPVYQPTNTQVLEEIEP 258
Cdd:PRK12270  101 AAAAAAAPAAAAVEDEVTP 119
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 26-138 1.96e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 39.41  E-value: 1.96e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378   26 SPPAPAPVyQPAPAPVYQPAPAPVYQPAPAPVViPAPAPAPVVIPAPAPAPVVIPAPAPvktyvppapisipapvyqPAP 105
Cdd:PRK14950 372 TAAAPSPV-RPTPAPSTRPKAAAAANIPPKEPV-RETATPPPVPPRPVAPPVPHTPESA------------------PKL 431

                         90       100       110
                 ....*....|....*....|....*....|...
gi 24654378  106 APIRIPAPVYQPAPAPisiPAPAPIEIPAPAPV 138
Cdd:PRK14950 432 TRAAIPVDEKPKYTPP---APPKEEEKALIADG 461
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
26-122 2.00e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 39.37  E-value: 2.00e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378   26 SPPAPAPVYQPAPAP------VYQPAPAPVYQPAPAPVVIPA--PAPAPVVIPAPAPAPVVIPAPAPVKTYVPPAPISIP 97
Cdd:PRK14971 388 AAPQPSAAAAASPSPsqssaaAQPSAPQSATQPAGTPPTVSVdpPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVSSLG 467

                         90       100
                 ....*....|....*....|....*
gi 24654378   98 APVYQPAPAPIRIPAPVYQPAPAPI 122
Cdd:PRK14971 468 PSTLRPIQEKAEQATGNIKEAPTGT 492
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 42-138 2.36e-03

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 39.49  E-value: 2.36e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378    42 YQPAPAPVYQPAPAPVVIPAPAPAPVVIPAPAPAPVVIPAPApvktyvppapisipapvyqPAPAPIRIPAPVYQPAPAP 121
Cdd:PRK12270   36 YGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAA-------------------AAPAAPPKPAAAAAAAAAP 96

                          90
                  ....*....|....*..
gi 24654378   122 ISIPAPAPIEIPAPAPV 138
Cdd:PRK12270   97 AAPPAAAAAAAPAAAAV 113
PHA03378 PHA03378
EBNA-3B; Provisional
 26-201 2.46e-03

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 39.28  E-value: 2.46e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378   26 SPPAPAPVYQPAPAPVYQPAPAPVYQPAPA---PVVIPAPAPAPVVIPAPAPAPVVIPAPAPVKtyvppapISIPAPVYQ 102
Cdd:PHA03378 650 TPHQPPQVEITPYKPTWTQIGHIPYQPSPTganTMLPIQWAPGTMQPPPRAPTPMRPPAAPPGR-------AQRPAAATG 722

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378  103 PAPAPIRIPAPVYQPAPAPISIPAPAPIEIPAPAPVNTYIPPAPAPAPVYQPAPAPIPVSIPAPAPVYQPAPAPVVIPAP 182
Cdd:PHA03378 723 RARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGAPTPQPPPQAPPAPQQRPRGAPTPQPPPQA 802

                        170
                 ....*....|....*....
gi 24654378  183 APAPVVIPAPAPAPVVIPA 201
Cdd:PHA03378 803 GPTSMQLMPRAAPGQQGPT 821
PHA03378 PHA03378
EBNA-3B; Provisional
 20-204 2.99e-03

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 38.89  E-value: 2.99e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378   20 HLGYDYSPPAPAPVYQPAPAPVYQPAPAPVYQPAPAPVVIPAPAPAPVVIPAPAPAPVVIPAPAPvktyvppapisipap 99
Cdd:PHA03378 671 HIPYQPSPTGANTMLPIQWAPGTMQPPPRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRAR--------------- 735

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378  100 vyQPAPAPIRIPAPVYQPAPAPISIPAPAPIEIPAPAPvntyippapapapvyqpapapipvSIPAPAPVYQPAPAPVVI 179
Cdd:PHA03378 736 --PPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAP------------------------GAPTPQPPPQAPPAPQQR 789

                        170       180
                 ....*....|....*....|....*
gi 24654378  180 PAPAPAPVVIPAPAPAPVVIPAPAP 204
Cdd:PHA03378 790 PRGAPTPQPPPQAGPTSMQLMPRAA 814
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
45-242 3.12e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 39.06  E-value: 3.12e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378   45 APAPVYQPAPAPVVIPAPAPAPVVIPAPAPAPVVIPAPAPVKTYVPPAPISIPAPVYQPAPAPIRIPAPVYQPAPAPISI 124
Cdd:PRK07003 366 GAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADG 445

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378  125 PAPAPIEIPAPAPVNTyippapapapvyqpapapiPVSIPAPAPVYQPAPAPVVIPAPAPAPVVIPAPAPAPVVIPAPAP 204
Cdd:PRK07003 446 DAPVPAKANARASADS-------------------RCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAA 506

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 24654378  205 VKSYVPPAPISIPAPAPVYQPAPISIPAPAPVYQPAPA 242
Cdd:PRK07003 507 VPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPAA 544
PRK14965 PRK14965
DNA polymerase III subunits gamma and tau; Provisional
 26-84 3.36e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237871 [Multi-domain]  Cd Length: 576  Bit Score: 38.57  E-value: 3.36e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 24654378   26 SPPAPAPVYQPAPAPVYQPAPA---PVYQPAPAPVVIPAPAPAPVVIPAPAP-APVVIPAPAP 84
Cdd:PRK14965 382 PAPPSAAWGAPTPAAPAAPPPAaapPVPPAAPARPAAARPAPAPAPPAAAAPpARSADPAAAA 444
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
37-204 3.38e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 38.68  E-value: 3.38e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378   37 APAPVYQPAPAPVYQPAPAPVVipaPAPAPVVIPAPAPAPVVIPAPAPVKTYVPPAPISIPAPVYQPAPAPIRIPAPVYQ 116
Cdd:PRK07003 359 EPAVTGGGAPGGGVPARVAGAV---PAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPAT 435

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378  117 P----APAPISIPAPAPIEIPAPAPVNTYIPPAPAPAPVYQPAPAPIPVSIPAPAPVYQPAPAPVVIPAPAPAPVVIPAP 192
Cdd:PRK07003 436 AdrgdDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAA 515

                        170
                 ....*....|..
gi 24654378  193 APAPVVIPAPAP 204
Cdd:PRK07003 516 ASREDAPAAAAP 527
PRK11633 PRK11633
cell division protein DedD; Provisional
 27-75 3.44e-03

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 38.06  E-value: 3.44e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 24654378   27 PPAPAPVYQPAPAPVYQPAPAPVYQPAPAPVVIPAPAPAPVVIPAPAPA 75
Cdd:PRK11633  98 EPEPAPVEPPKPKPVEKPKPKPKPQQKVEAPPAPKPEPKPVVEEKAAPT 146
PRK11633 PRK11633
cell division protein DedD; Provisional
 28-85 4.52e-03

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 37.67  E-value: 4.52e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 24654378   28 PAPAPVYQPAPAPVYQPAPAPVYQPAPAPVVIPAPAPAPVviPAPAPAPVVIPAPAPV 85
Cdd:PRK11633  91 APPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEAPPA--PKPEPKPVVEEKAAPT 146
PRK05641 PRK05641
putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
 162-206 4.72e-03

putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated


Pssm-ID: 235540 [Multi-domain]  Cd Length: 153  Bit Score: 36.76  E-value: 4.72e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 24654378  162 SIPAPAPVYQPAPAPVVIPAPAPAPVVIPAPAPAPV---VIPAPAPVK 206
Cdd:PRK05641  47 AVQEQVPTPAPAPAPAVPSAPTPVAPAAPAPAPASAgenVVTAPMPGK 94
PspC_subgroup_1 NF033838
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ...
 43-113 6.06e-03

pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.


Pssm-ID: 468201 [Multi-domain]  Cd Length: 684  Bit Score: 38.07  E-value: 6.06e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 24654378   43 QPAPAPVYQPAPAPvviPAPAPAPVViPAPAPAPVVIPAPAPVKTYVPPAPISIPAPVYQPAPAPIRIPAP 113
Cdd:NF033838 415 KPAEQPQPAPAPQP---EKPAPKPEK-PAEQPKAEKPADQQAEEDYARRSEEEYNRLTQQQPPKTEKPAQP 481
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
103-260 6.33e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 37.91  E-value: 6.33e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378  103 PAPAPIRIPAPVYQPAPAPISIPAPAPIEIPAPAPVNTYIPPAPAPAPVYQPAPAPIPVSIPAPAPVYQPAPAPVVIPAP 182
Cdd:PRK07003 369 GGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAP 448

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 24654378  183 APAPVVIPAPAPAPVVIPAPAPVKSYVPPAPISIPAPAPVYQPAPISIPAPAPVYQPAPAPVYQPTNTQVLEEIEPAS 260
Cdd:PRK07003 449 VPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAA 526
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 12-208 6.77e-03

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 37.76  E-value: 6.77e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378    12 ACAYGDVSHLGYDYSPPAPAPVYQPAPAPVYQPAPAPVYQPAP-----APVVIPAPAPAPVVIPAPAPAPVVI-PAPA-- 83
Cdd:PRK10263  418 QPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQStyqteQTYQQPAAQEPLYQQPQPVEQQPVVePEPVve 497

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378    84 ------PVKTYVPPAPISIPAPVYQPAPAPIRIPAPVYQPAPAPISIPAPAPIEIPAPAPVNTYIPPAPAPAPVYQPAPA 157
Cdd:PRK10263  498 etkparPPLYYFEEVEEKRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPPVEAAAAVSPLASGVKKATLATGA 577

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 24654378   158 PIPVSIPAPAPVYQPAPAPVVIPAPAPApvvipAPAPAPVVIPAPAPVKSY 208
Cdd:PRK10263  578 AATVAAPVFSLANSGGPRPQVKEGIGPQ-----LPRPKRIRVPTRRELASY 623
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
46-139 9.31e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 37.25  E-value: 9.31e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24654378   46 PAPVYQPAPAPVVIPAPAPAPVVIPAPAPAPVVIPAPAPVKTyvppapisipapvyQPAPAPIRIPAPVYQPAPAPISIP 125
Cdd:PRK14948 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAAT--------------TPSPPPAKASPPIPVPAEPTEPSP 426

                         90
                 ....*....|....
gi 24654378  126 APAPIEIPAPAPVN 139
Cdd:PRK14948 427 TPPANAANAPPSLN 440
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 177-243 9.50e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 37.10  E-value: 9.50e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 24654378  177 VVIPAPAPAPVVIPAPAPAPVViPAPAPVKSYVPPAPISIPAPAPVYQPAPISIPAPAPVYQPAPAP 243
Cdd:PRK14950 359 LLVPVPAPQPAKPTAAAPSPVR-PTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHT 424
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
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