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Conserved domains on  [gi|21263114|ref|NP_644680|]
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apocytochrome b (mitochondrion) [Naumovozyma castellii]

Protein Classification

cytochrome b/b6( domain architecture ID 11475928)

cytochrome b/b6 (PetB) is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme; cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes; in plants and cyanobacteria, cytochrome b6 is analogous to cytochrome b and contains two chains: helices A-D (encoded by petB) and helices E-H (encoded by petD)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 10-366 2.18e-166

cytochrome b; Provisional


:

Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 469.65  E-value: 2.18e-166
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114   10 LNLVNSYIIDSPQPSSINYWWNMGSLLGLCLVIQILTGIFMAMHYSSNIELAFSSVEHIMRDVQGGWFLRYAHANGASFF 89
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114   90 FICMYIHMGKALYYGSYRSPRVllWTIGVIIFILTMATAFLGYCCVYGQMSHWGATVITNLFSAIPFIGKDIVLWLWGGF 169
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHT--WMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGF 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114  170 AVSNPTIQRFFALHYLFPFVIAAVVIMHMMALHIHGSSNPLGITGNMDRLPMHGYFVFKDLITVFVFLIVFSLFVFFSPN 249
Cdd:MTH00156 159 SVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPY 238

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114  250 TMGHPDNYIPGNPMVTPASIVPEWYLLPFYAILRSIPDKLMGVITMFSAILVLLVLPFTDRSVVRGNSFKVLSKLFFFLF 329
Cdd:MTH00156 239 LLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIF 318

                        330       340       350
                 ....*....|....*....|....*....|....*..
gi 21263114  330 VFNFVLLGQIGAVHVEVPYILMGQISTFLYFAYFLVF 366
Cdd:MTH00156 319 VNIVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 10-366 2.18e-166

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 469.65  E-value: 2.18e-166
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114   10 LNLVNSYIIDSPQPSSINYWWNMGSLLGLCLVIQILTGIFMAMHYSSNIELAFSSVEHIMRDVQGGWFLRYAHANGASFF 89
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114   90 FICMYIHMGKALYYGSYRSPRVllWTIGVIIFILTMATAFLGYCCVYGQMSHWGATVITNLFSAIPFIGKDIVLWLWGGF 169
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHT--WMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGF 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114  170 AVSNPTIQRFFALHYLFPFVIAAVVIMHMMALHIHGSSNPLGITGNMDRLPMHGYFVFKDLITVFVFLIVFSLFVFFSPN 249
Cdd:MTH00156 159 SVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPY 238

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114  250 TMGHPDNYIPGNPMVTPASIVPEWYLLPFYAILRSIPDKLMGVITMFSAILVLLVLPFTDRSVVRGNSFKVLSKLFFFLF 329
Cdd:MTH00156 239 LLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIF 318

                        330       340       350
                 ....*....|....*....|....*....|....*..
gi 21263114  330 VFNFVLLGQIGAVHVEVPYILMGQISTFLYFAYFLVF 366
Cdd:MTH00156 319 VNIVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
23-374 2.57e-133

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 387.22  E-value: 2.57e-133
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114  23 PSSINYWWNMGSLLGLCLVIQILTGIFMAMHYSSNIELAFSSVEHIMRDVQGGWFLRYAHANGASFFFICMYIHMGKALY 102
Cdd:COG1290  33 PKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFF 112

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114 103 YGSYRSPRVLLWTIGVIIFILTMATAFLGYCCVYGQMSHWGATVITNLFSAIPFIGKDIVLWLWGGFAVSNPTIQRFFAL 182
Cdd:COG1290 113 YGAYKKPRELNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFAL 192

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114 183 HYL-FPFVIAAVVIMHMMALHIHGSSNPLGI----TGNMDRLPMHGYFVFKDLITVFVFLIVFSLFVFFSPNtmGHPDNY 257
Cdd:COG1290 193 HVLlLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNY 270

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114 258 IPGNPMVTPASIVPEWYLLPFYAILRSIP--DKLMGVITMFSAILVLLVLPFTDRSVVRGNSFKVLSKLFFFLFVFNFVL 335
Cdd:COG1290 271 GPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIV 350

                       330       340       350
                ....*....|....*....|....*....|....*....
gi 21263114 336 LGQIGAvhVEVPYILMGQISTFLYFAYFLVFIPIISTIE 374
Cdd:COG1290 351 LTILGA--NPPIATLLGSINTVTYFAFFLIVLPILAFIE 387
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 8-207 2.59e-92

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 275.40  E-value: 2.59e-92
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114   8 VYLNLVNSYIIDSPQPSSINYWWNMGSLLGLCLVIQILTGIFMAMHYSSNIELAFSSVEHIMRDVQGGWFLRYAHANGAS 87
Cdd:cd00284   1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114  88 FFFICMYIHMGKALYYGSYRSPRVLLWTIGVIIFILTMATAFLGYCCVYGQMSHWGATVITNLFSAIPFIGKDIVLWLWG 167
Cdd:cd00284  81 MFFLMLYLHIFRGLYYGSYKKPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                       170       180       190       200
                ....*....|....*....|....*....|....*....|
gi 21263114 168 GFAVSNPTIQRFFALHYLFPFVIAAVVIMHMMALHIHGSS 207
Cdd:cd00284 161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
17-205 7.74e-70

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 217.63  E-value: 7.74e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114    17 IIDSPQPSSINYWWNMGSLLGLCLVIQILTGIFMAMHYSSNIELAFSSVEHIMRDVQGGWFLRYAHANGASFFFICMYIH 96
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114    97 MGKALYYGSYRSPRVLLWTIGVIIFILTMATAFLGYCCVYGQMSHWGATVITNLFSAIPFIGKDIVLWLWGGFAVSNPTI 176
Cdd:pfam00033  81 IFRGLYYGGFSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 21263114   177 QRFFALHYLFPFVIAAVVIMHMMALHIHG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 10-366 2.18e-166

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 469.65  E-value: 2.18e-166
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114   10 LNLVNSYIIDSPQPSSINYWWNMGSLLGLCLVIQILTGIFMAMHYSSNIELAFSSVEHIMRDVQGGWFLRYAHANGASFF 89
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114   90 FICMYIHMGKALYYGSYRSPRVllWTIGVIIFILTMATAFLGYCCVYGQMSHWGATVITNLFSAIPFIGKDIVLWLWGGF 169
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHT--WMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGF 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114  170 AVSNPTIQRFFALHYLFPFVIAAVVIMHMMALHIHGSSNPLGITGNMDRLPMHGYFVFKDLITVFVFLIVFSLFVFFSPN 249
Cdd:MTH00156 159 SVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPY 238

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114  250 TMGHPDNYIPGNPMVTPASIVPEWYLLPFYAILRSIPDKLMGVITMFSAILVLLVLPFTDRSVVRGNSFKVLSKLFFFLF 329
Cdd:MTH00156 239 LLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIF 318

                        330       340       350
                 ....*....|....*....|....*....|....*..
gi 21263114  330 VFNFVLLGQIGAVHVEVPYILMGQISTFLYFAYFLVF 366
Cdd:MTH00156 319 VNIVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
CYTB MTH00191
cytochrome b; Provisional
 3-369 4.46e-164

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 464.00  E-value: 4.46e-164
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114    3 FRKSNVYLNLVNSYIIDSPQPSSINYWWNMGSLLGLCLVIQILTGIFMAMHYSSNIELAFSSVEHIMRDVQGGWFLRYAH 82
Cdd:MTH00191   1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114   83 ANGASFFFICMYIHMGKALYYGSYRspRVLLWTIGVIIFILTMATAFLGYCCVYGQMSHWGATVITNLFSAIPFIGKDIV 162
Cdd:MTH00191  81 ANGASFFFICIYLHIGRGLYYGSYL--NKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLV 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114  163 LWLWGGFAVSNPTIQRFFALHYLFPFVIAAVVIMHMMALHIHGSSNPLGITGNMDRLPMHGYFVFKDLITVFVFLIVFSL 242
Cdd:MTH00191 159 QWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLF 238

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114  243 FVFFSPNTMGHPDNYIPGNPMVTPASIVPEWYLLPFYAILRSIPDKLMGVITMFSAILVLLVLPFTDRSVVRGNSFKVLS 322
Cdd:MTH00191 239 LVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLT 318

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*..
gi 21263114  323 KLFFFLFVFNFVLLGQIGAVHVEVPYILMGQISTFLYFAYFLVFIPI 369
Cdd:MTH00191 319 QVVFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLLLFPL 365
CYTB MTH00145
cytochrome b; Provisional
 1-379 3.09e-162

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 460.14  E-value: 3.09e-162
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114    1 MTFRKSNVYLNLVNSYIIDSPQPSSINYWWNMGSLLGLCLVIQILTGIFMAMHYSSNIELAFSSVEHIMRDVQGGWFLRY 80
Cdd:MTH00145   3 SPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRS 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114   81 AHANGASFFFICMYIHMGKALYYGSYRSPRVllWTIGVIIFILTMATAFLGYCCVYGQMSHWGATVITNLFSAIPFIGKD 160
Cdd:MTH00145  83 LHANGASFFFICIYLHIGRGLYYGSYLMQHT--WNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKM 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114  161 IVLWLWGGFAVSNPTIQRFFALHYLFPFVIAAVVIMHMMALHIHGSSNPLGITGNMDRLPMHGYFVFKDLITVFVFLIVF 240
Cdd:MTH00145 161 LVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114  241 SLFVFFSPNTMGHPDNYIPGNPMVTPASIVPEWYLLPFYAILRSIPDKLMGVITMFSAILVLLVLPFTDRSVVRGNSFKV 320
Cdd:MTH00145 241 VFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYP 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 21263114  321 LSKLFFFLFVFNFVLLGQIGAVHVEVPYILMGQISTFLYFAYFLVFIPIISTIENILFY 379
Cdd:MTH00145 321 LNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLILPLVQKLWDNILDY 379
CYTB MTH00119
cytochrome b; Provisional
 4-375 1.15e-159

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 453.59  E-value: 1.15e-159
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114    4 RKSNVYLNLVNSYIIDSPQPSSINYWWNMGSLLGLCLVIQILTGIFMAMHYSSNIELAFSSVEHIMRDVQGGWFLRYAHA 83
Cdd:MTH00119   6 RKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHA 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114   84 NGASFFFICMYIHMGKALYYGSYRSPRVllWTIGVIIFILTMATAFLGYCCVYGQMSHWGATVITNLFSAIPFIGKDIVL 163
Cdd:MTH00119  86 NGASMFFICIYLHIGRGLYYGSYLYKET--WNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVE 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114  164 WLWGGFAVSNPTIQRFFALHYLFPFVIAAVVIMHMMALHIHGSSNPLGITGNMDRLPMHGYFVFKDLITVFVFLIVFSLF 243
Cdd:MTH00119 164 WIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTL 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114  244 VFFSPNTMGHPDNYIPGNPMVTPASIVPEWYLLPFYAILRSIPDKLMGVITMFSAILVLLVLPFTDRSVVRGNSFKVLSK 323
Cdd:MTH00119 244 ALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQ 323

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|..
gi 21263114  324 LFFFLFVFNFVLLGQIGAVHVEVPYILMGQISTFLYFAYFLVFIPIISTIEN 375
Cdd:MTH00119 324 LLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALEN 375
CYTB MTH00131
cytochrome b; Provisional
 1-375 1.87e-157

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 447.95  E-value: 1.87e-157
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114    1 MTFRKSNVYLNLVNSYIIDSPQPSSINYWWNMGSLLGLCLVIQILTGIFMAMHYSSNIELAFSSVEHIMRDVQGGWFLRY 80
Cdd:MTH00131   2 ASLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRN 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114   81 AHANGASFFFICMYIHMGKALYYGSYRSPRVllWTIGVIIFILTMATAFLGYCCVYGQMSHWGATVITNLFSAIPFIGKD 160
Cdd:MTH00131  82 LHANGASFFFICIYLHIGRGLYYGSYLYKET--WNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114  161 IVLWLWGGFAVSNPTIQRFFALHYLFPFVIAAVVIMHMMALHIHGSSNPLGITGNMDRLPMHGYFVFKDLITVFVFLIVF 240
Cdd:MTH00131 160 LVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLAL 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114  241 SLFVFFSPNTMGHPDNYIPGNPMVTPASIVPEWYLLPFYAILRSIPDKLMGVITMFSAILVLLVLPFTDRSVVRGNSFKV 320
Cdd:MTH00131 240 TSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRP 319

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 21263114  321 LSKLFFFLFVFNFVLLGQIGAVHVEVPYILMGQISTFLYFAYFLVFIPIISTIEN 375
Cdd:MTH00131 320 LTQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLEN 374
CYTB MTH00016
cytochrome b; Validated
 3-379 8.22e-155

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 441.04  E-value: 8.22e-155
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114    3 FRKSNVYLNLVNSYIIDSPQPSSINYWWNMGSLLGLCLVIQILTGIFMAMHYSSNIELAFSSVEHIMRDVQGGWFLRYAH 82
Cdd:MTH00016   5 MRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLH 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114   83 ANGASFFFICMYIHMGKALYYGSYRSPRVllWTIGVIIFILTMATAFLGYCCVYGQMSHWGATVITNLFSAIPFIGKDIV 162
Cdd:MTH00016  85 ANGASFFFICLYLHIGRGIYYGSYFLMET--WNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLV 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114  163 LWLWGGFAVSNPTIQRFFALHYLFPFVIAAVVIMHMMALHIHGSSNPLGITGNMDRLPMHGYFVFKDLITVFVFLIVFSL 242
Cdd:MTH00016 163 QWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLS 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114  243 FVFFSPNTMGHPDNYIPGNPMVTPASIVPEWYLLPFYAILRSIPDKLMGVITMFSAILVLLVLPFTDRSVVRGNSFKVLS 322
Cdd:MTH00016 243 VVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLN 322

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 21263114  323 KLFFFLFVFNFVLLGQIGAVHVEVPYILMGQISTFLYFAYFLvFIPIISTIENILFY 379
Cdd:MTH00016 323 QILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFM-INPLLMKLWDKLLK 378
CYTB MTH00022
cytochrome b; Validated
 1-379 8.88e-152

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 433.74  E-value: 8.88e-152
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114    1 MTFRKSNVYLNLVNSYIIDSPQPSSINYWWNMGSLLGLCLVIQILTGIFMAMHYSSNIELAFSSVEHIMRDVQGGWFLRY 80
Cdd:MTH00022   1 MPLRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114   81 AHANGASFFFICMYIHMGKALYYGSYRspRVLLWTIGVIIFILTMATAFLGYCCVYGQMSHWGATVITNLFSAIPFIGKD 160
Cdd:MTH00022  81 LHANGASLFFLCLYIHIGRGLYYGGYL--KFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTD 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114  161 IVLWLWGGFAVSNPTIQRFFALHYLFPFVIAAVVIMHMMALHIHGSSNPLGITGNMDRLPMHGYFVFKDLITVFVFLIVF 240
Cdd:MTH00022 159 IVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLL 238

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114  241 SLFVFFSPNTMGHPDNYIPGNPMVTPASIVPEWYLLPFYAILRSIPDKLMGVITMFSAILVLLVLPFTDRSVVRGNSFKV 320
Cdd:MTH00022 239 SFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRP 318

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 21263114  321 LSKLFFFLFVFNFVLLGQIGAVHVEVPYILMGQISTFLYFAYFLVFIPIISTIENILFY 379
Cdd:MTH00022 319 LGRMAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLIPLLGELENQLLF 377
CYTB MTH00034
cytochrome b; Validated
 4-379 3.54e-151

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 432.21  E-value: 3.54e-151
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114    4 RKSNVYLNLVNSYIIDSPQPSSINYWWNMGSLLGLCLVIQILTGIFMAMHYSSNIELAFSSVEHIMRDVQGGWFLRYAHA 83
Cdd:MTH00034   5 RKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHA 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114   84 NGASFFFICMYIHMGKALYYGSYRSprVLLWTIGVIIFILTMATAFLGYCCVYGQMSHWGATVITNLFSAIPFIGKDIVL 163
Cdd:MTH00034  85 NGASLFFICLYFHIGRGLYYGSYVN--IETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQ 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114  164 WLWGGFAVSNPTIQRFFALHYLFPFVIAAVVIMHMMALHIHGSSNPLGITGNMDRLPMHGYFVFKDLITVFVFLIVFSLF 243
Cdd:MTH00034 163 WIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSL 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114  244 VFFSPNTMGHPDNYIPGNPMVTPASIVPEWYLLPFYAILRSIPDKLMGVITMFSAILVLLVLPFTDRSVVRGNSFKVLSK 323
Cdd:MTH00034 243 ALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQ 322

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 21263114  324 LFFFLFVFNFVLLGQIGAVHVEVPYILMGQISTFLYFAYFLVFIPIISTIENILFY 379
Cdd:MTH00034 323 IAFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFFFPLISYLENKLIF 378
CYTB MTH00100
cytochrome b; Provisional
 1-378 2.09e-149

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 427.52  E-value: 2.09e-149
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114    1 MT-FRKSNVYLNLVNSYIIDSPQPSSINYWWNMGSLLGLCLVIQILTGIFMAMHYSSNIELAFSSVEHIMRDVQGGWFLR 79
Cdd:MTH00100   1 MTnIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114   80 YAHANGASFFFICMYIHMGKALYYGSYRSPRVllWTIGVIIFILTMATAFLGYCCVYGQMSHWGATVITNLFSAIPFIGK 159
Cdd:MTH00100  81 YLHANGASMFFICLFLHVGRGLYYGSYLFLET--WNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGT 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114  160 DIVLWLWGGFAVSNPTIQRFFALHYLFPFVIAAVVIMHMMALHIHGSSNPLGITGNMDRLPMHGYFVFKDLITVFVFLIV 239
Cdd:MTH00100 159 TLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILT 238

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114  240 FSLFVFFSPNTMGHPDNYIPGNPMVTPASIVPEWYLLPFYAILRSIPDKLMGVITMFSAILVLLVLPFTDRSVVRGNSFK 319
Cdd:MTH00100 239 LMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFR 318

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 21263114  320 VLSKLFFFLFVFNFVLLGQIGAVHVEVPYILMGQISTFLYFAYFLVFIPIISTIENILF 378
Cdd:MTH00100 319 PLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLL 377
CYTB MTH00074
cytochrome b; Provisional
 1-377 6.83e-146

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 418.70  E-value: 6.83e-146
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114    1 MTFRKSNVYLNLVNSYIIDSPQPSSINYWWNMGSLLGLCLVIQILTGIFMAMHYSSNIELAFSSVEHIMRDVQGGWFLRY 80
Cdd:MTH00074   3 HPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRN 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114   81 AHANGASFFFICMYIHMGKALYYGSYRSPRVllWTIGVIIFILTMATAFLGYCCVYGQMSHWGATVITNLFSAIPFIGKD 160
Cdd:MTH00074  83 IHANGASFFFICIYLHIGRGLYYGSYMYKET--WNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114  161 IVLWLWGGFAVSNPTIQRFFALHYLFPFVIAAVVIMHMMALHIHGSSNPLGITGNMDRLPMHGYFVFKDLITVFVFLIVF 240
Cdd:MTH00074 161 LVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTAL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114  241 SLFVFFSPNTMGHPDNYIPGNPMVTPASIVPEWYLLPFYAILRSIPDKLMGVITMFSAILVLLVLPFTDRSVVRGNSFKV 320
Cdd:MTH00074 241 ALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRP 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 21263114  321 LSKLFFFLFVFNFVLLGQIGAVHVEVPYILMGQISTFLYFAYFLVFIPIISTIENIL 377
Cdd:MTH00074 321 LTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENKL 377
CYTB MTH00053
cytochrome b; Provisional
 2-377 1.05e-142

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 410.64  E-value: 1.05e-142
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114    2 TFRKSNVYLNLVNSYIIDSPQPSSINYWWNMGSLLGLCLVIQILTGIFMAMHYSSNIELAFSSVEHIMRDVQGGWFLRYA 81
Cdd:MTH00053   4 TIRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114   82 HANGASFFFICMYIHMGKALYYGSYRspRVLLWTIGVIIFILTMATAFLGYCCVYGQMSHWGATVITNLFSAIPFIGKDI 161
Cdd:MTH00053  84 HANGASMFFLCVYFHIGRGIYYGSYT--KIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDI 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114  162 VLWLWGGFAVSNPTIQRFFALHYLFPFVIAAVVIMHMMALHIHGSSNPLGITGNMDRLPMHGYFVFKDLITVFVFLIVFS 241
Cdd:MTH00053 162 VRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILS 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114  242 LFVFFSPNTMGHPDNYIPGNPMVTPASIVPEWYLLPFYAILRSIPDKLMGVITMFSAILVLLVLPFTDRSVVRGNSFKVL 321
Cdd:MTH00053 242 IIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPL 321

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 21263114  322 SKLFFFLFVFNFVLLGQIGAVHVEVPYILMGQISTFLYFAYFLVFIPIISTIENIL 377
Cdd:MTH00053 322 SKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLENKL 377
CYTB MTH00224
cytochrome b; Provisional
 3-365 9.72e-134

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 387.74  E-value: 9.72e-134
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114    3 FRKSNVYLNLVNSYIIDSPQPSSINYWWNMGSLLGLCLVIQILTGIFMAMHYSSNIELAFSSVEHIMRDVQGGWFLRYAH 82
Cdd:MTH00224   5 FRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIH 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114   83 ANGASFFFICMYIHMGKALYYGSYRspRVLLWTIGVIIFILTMATAFLGYCCVYGQMSHWGATVITNLFSAIPFIGKDIV 162
Cdd:MTH00224  85 ANGASMFFLFIYLHVGRGLYYGSFN--LSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLV 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114  163 LWLWGGFAVSNPTIQRFFALHYLFPFVIAAVVIMHMMALHIHGSSNPLGITGNMDRLPMHGYFVFKDLITVFVFLIVFSL 242
Cdd:MTH00224 163 EWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSL 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114  243 FVFFSPNTMGHPDNYIPGNPMVTPASIVPEWYLLPFYAILRSIPDKLMGVITMFSAILVLLVLPFTDRSVVRGNSFKVLS 322
Cdd:MTH00224 243 MVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLN 322

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|...
gi 21263114  323 KLFFFLFVFNFVLLGQIGAVHVEVPYILMGQISTFLYFAYFLV 365
Cdd:MTH00224 323 QLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSYFII 365
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
23-374 2.57e-133

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 387.22  E-value: 2.57e-133
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114  23 PSSINYWWNMGSLLGLCLVIQILTGIFMAMHYSSNIELAFSSVEHIMRDVQGGWFLRYAHANGASFFFICMYIHMGKALY 102
Cdd:COG1290  33 PKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFF 112

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114 103 YGSYRSPRVLLWTIGVIIFILTMATAFLGYCCVYGQMSHWGATVITNLFSAIPFIGKDIVLWLWGGFAVSNPTIQRFFAL 182
Cdd:COG1290 113 YGAYKKPRELNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFAL 192

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114 183 HYL-FPFVIAAVVIMHMMALHIHGSSNPLGI----TGNMDRLPMHGYFVFKDLITVFVFLIVFSLFVFFSPNtmGHPDNY 257
Cdd:COG1290 193 HVLlLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNY 270

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114 258 IPGNPMVTPASIVPEWYLLPFYAILRSIP--DKLMGVITMFSAILVLLVLPFTDRSVVRGNSFKVLSKLFFFLFVFNFVL 335
Cdd:COG1290 271 GPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIV 350

                       330       340       350
                ....*....|....*....|....*....|....*....
gi 21263114 336 LGQIGAvhVEVPYILMGQISTFLYFAYFLVFIPIISTIE 374
Cdd:COG1290 351 LTILGA--NPPIATLLGSINTVTYFAFFLIVLPILAFIE 387
CYTB MTH00033
cytochrome b; Provisional
 17-378 1.02e-113

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 336.91  E-value: 1.02e-113
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114   17 IIDSPQPSSINYWWNMGSLLGLCLVIQILTGIFMAMHYSSNIELAFSSVEHIMRDVQGGWFLRYAHANGASFFFICMYIH 96
Cdd:MTH00033  15 IIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCH 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114   97 MGKALYYGSYRspRVLLWTIGVIIFILTMATAFLGYCCVYGQMSHWGATVITNLFSAIPFIGKDIVLWLWGGFAVSNPTI 176
Cdd:MTH00033  95 IGRGLYYGGYS--RVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTL 172

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114  177 QRFFALHYLFPFVIAAVVIMHMMALHIHGSSNPLGITGNMDRLPMHGYFVFKDLITvfvFLIVFSLFVFFS-----PNTM 251
Cdd:MTH00033 173 NRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILG---FLILFGVFVIIGiepriETLL 249

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114  252 GHPDNYIPGNPMVTPASIVPEWYLLPFYAILRSIPDKLMGVITMFSAILVLLVLPFTDRSVVRGNSFKVLSKLFFFLFVF 331
Cdd:MTH00033 250 QDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVG 329

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*...
gi 21263114  332 NFVLLGQIGAVHVEV-PYILMGQISTFLYFAYFLVFIPIISTIENILF 378
Cdd:MTH00033 330 DFIILTWIGSAPAGAdPYVLIGRIATIFYFGYFLVLVPLLGYLSNLFY 377
CYTB MTH00086
cytochrome b; Provisional
 11-366 1.94e-98

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 296.85  E-value: 1.94e-98
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114   11 NLVNSYIIDSPQPSSINYWWNMGSLLGLCLVIQILTGIFMAMHYSSNIELAFSSVEHIMRDVQGGWFLRYAHANGASFFF 90
Cdd:MTH00086   1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114   91 ICMYIHMGKALYYGSYRSPRVllWTIGVIIFILTMATAFLGYCCVYGQMSHWGATVITNLFSAIPFIGKDIVLWLWGGFA 170
Cdd:MTH00086  81 IFLYLHIFKGLFMMSYRLKKV--WISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFG 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114  171 VSNPTIQRFFALHYLFPFVIAAVVIMHMMALHIHGSSNPLGITGNMDRLPMHGYFVFKDLITVFvFLIVFSLFVFFSPNT 250
Cdd:MTH00086 159 VSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNII-FWLVFIIFSLFYPFN 237

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114  251 MGHPDNYIPGNPMVTPASIVPEWYLLPFYAILRSIPDKLMGVITMFSAILVLLVLPFTDRSVVRGNSFKVLSKLFFFLFV 330
Cdd:MTH00086 238 LGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNYTSCLNKLNKFLVFSFIVVN 317

                        330       340       350
                 ....*....|....*....|....*....|....*.
gi 21263114  331 FNFVLLGQigaVHVEVPYILMGQISTFLYFAYFLVF 366
Cdd:MTH00086 318 VILSWLGQ---CLVEYPFLFLSQIFSFIYFFLILLM 350
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 8-207 2.59e-92

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 275.40  E-value: 2.59e-92
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114   8 VYLNLVNSYIIDSPQPSSINYWWNMGSLLGLCLVIQILTGIFMAMHYSSNIELAFSSVEHIMRDVQGGWFLRYAHANGAS 87
Cdd:cd00284   1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114  88 FFFICMYIHMGKALYYGSYRSPRVLLWTIGVIIFILTMATAFLGYCCVYGQMSHWGATVITNLFSAIPFIGKDIVLWLWG 167
Cdd:cd00284  81 MFFLMLYLHIFRGLYYGSYKKPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                       170       180       190       200
                ....*....|....*....|....*....|....*....|
gi 21263114 168 GFAVSNPTIQRFFALHYLFPFVIAAVVIMHMMALHIHGSS 207
Cdd:cd00284 161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
CYTB MTH00046
cytochrome b; Validated
 10-366 1.78e-72

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 230.25  E-value: 1.78e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114   10 LNLVNSYIIDSPQPSSINYWWNMGSLLGLCLVIQILTGIFMAMHYSSNIELAFSSVEHIMRDVQGGWFLRYAHANGASFF 89
Cdd:MTH00046   2 ISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114   90 FICMYIHMGKALYYGSYRspRVLLWTIGVIIFILTMATAFLGYCCVYGQMSHWGATVITNLFSAIPFIGKDIVLWLWGGF 169
Cdd:MTH00046  82 FILLFIHMGRALYYSSYS--KKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGF 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114  170 AVSNPTIQRFFALHYLFPFVIAAVVIMHMMALHIHGSSNPLGITGNM-DRLPMHGYFVFKDLITVFVFLIVFSLFVFFSP 248
Cdd:MTH00046 160 SVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGYsDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSP 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114  249 NTMGHPDNYIPGNPMVTPASIVPEWYLLPFYAILRSIPDKLMGVITMFSAILVLLVLPFTDRSVvrgnsFKVLSKLFFFL 328
Cdd:MTH00046 240 DLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGGLVLVLSFLFFLWVPTFNGSSV-----YSVWRQVNFWL 314

                        330       340       350
                 ....*....|....*....|....*....|....*...
gi 21263114  329 FVFNFVLLGQIGAVHVEVPYILMGQISTFLYFAYFLVF 366
Cdd:MTH00046 315 IVSLFFSLSYLGGCHPEYPYLLISQLFSVLMVLLLFIF 352
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
17-205 7.74e-70

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 217.63  E-value: 7.74e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114    17 IIDSPQPSSINYWWNMGSLLGLCLVIQILTGIFMAMHYSSNIELAFSSVEHIMRDVQGGWFLRYAHANGASFFFICMYIH 96
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114    97 MGKALYYGSYRSPRVLLWTIGVIIFILTMATAFLGYCCVYGQMSHWGATVITNLFSAIPFIGKDIVLWLWGGFAVSNPTI 176
Cdd:pfam00033  81 IFRGLYYGGFSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 21263114   177 QRFFALHYLFPFVIAAVVIMHMMALHIHG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 208-354 3.34e-44

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 150.10  E-value: 3.34e-44
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114 208 NPLGITGNMDRLPMHGYFVFKDLITVFVFLIVFSLFVFFSPNTMGHPDNYIPGNPMVTPASIVPEWYLLPFYAILRSIPD 287
Cdd:cd00290   1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 21263114 288 KLMGVITMFSAILVLLVLPFTDRSVVRGNsFKVLSKLFFFLFVFNFVLLGQIGAVHVEVPYILMGQI 354
Cdd:cd00290  81 KLLGVLAMAASILSLFLVPFLENSNKRSQ-FRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQL 146
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
87-254 6.11e-40

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 139.68  E-value: 6.11e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114    87 SFFFICMYIHMGKALYYGSYRSPRVLLWTIGVIIFILTMATAFLGYCCVYGQMSHWGATVITNLFSAIPFIGKDIVLWLW 166
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRELNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114   167 GGFAVSNPTIQRFFALH-YLFPFVIAAVVIMHMMALHIHGSSNPLGITGNMDRLPMHGYFVFKDLITVFVFLIVFSLFVF 245
Cdd:pfam13631  81 GGPFPGTATIPRFYALHiLLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 21263114   246 FSPNTMGHP 254
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 32-210 3.53e-35

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 129.06  E-value: 3.53e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114   32 MGSLLGLCLVIQILTGIFMAMHYSSNIELAFSSVEHIMRDVQGGWFLRYAHANGASFFFICMYIHMGKALYYGSYRSPRV 111
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRE 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114  112 LLWTIGVIIFILTMATAFLGYCCVYGQMSHWGATVITNLFSAIPFIGKDIVLWLWGGFAVSNPTIQRFFALH-YLFPFVI 190
Cdd:PRK03735 124 LNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                        170       180
                 ....*....|....*....|
gi 21263114  191 AAVVIMHMMALHIHGSSNPL 210
Cdd:PRK03735 204 AVLMLAHFLMIRKQGISGPL 223
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
259-359 4.78e-35

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 124.51  E-value: 4.78e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114   259 PGNPMVTPASIVPEWYLLPFYAILRSIPDKLMGVITMFSAILVLLVLPFTDRSVVRGNSFKVLSKLFFFLFVFNFVLLGQ 338
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 21263114   339 IGAVHVEVPYILMGQISTFLY 359
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
petB CHL00070
cytochrome b6
 23-210 8.76e-32

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 119.44  E-value: 8.76e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114   23 PSSINYWWNMGSLLGLCLVIQILTGIFMAMHYSSNIELAFSSVEHIMRDVQGGWFLRYAHANGASFFFICMYIHMGKALY 102
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21263114  103 YGSYRSPRVLLWTIGVIIFILTMATAFLGYCCVYGQMSHWGATVITNLFSAIPFIGKDIVLWLWGGFAVSNPTIQRFFAL 182
Cdd:CHL00070 107 TGGFKKPRELTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                        170       180
                 ....*....|....*....|....*....
gi 21263114  183 H-YLFPFVIAAVVIMHMMALHIHGSSNPL 210
Cdd:CHL00070 187 HtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
petD CHL00058
cytochrome b6/f complex subunit IV
 259-309 7.24e-11

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 60.02  E-value: 7.24e-11
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 21263114  259 PGNPMVTPASIVPEWYLLPFYAILRSIPDKLMGVITMFSAILVLLVLPFTD 309
Cdd:CHL00058  65 PADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLE 115
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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