|
Name |
Accession |
Description |
Interval |
E-value |
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
68-482 |
1.91e-14 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 75.36 E-value: 1.91e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24644979 68 LELENCDSPDFTMNDLNQLPYLTSLQLRRGNLLGLHDEHFSKWPNMKILMLGGNNItrlsnecFKGLAQLWLLSLPGNGI 147
Cdd:COG4886 53 LSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGNEE-------LSNLTNLESLDLSGNQL 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24644979 148 QGLPWDvFQNLPELLHLDLSGNRIETLHENIFtGVPKLEMLLLNGNPLTWIaPTSLKSLSNLRLLDMSNCgPLPDLSLPg 227
Cdd:COG4886 126 TDLPEE-LANLTNLKELDLSNNQLTDLPEPLG-NLTNLKSLDLSNNQLTDL-PEELGNLTNLKELDLSNN-QITDLPEP- 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24644979 228 ahtlildnsgvqrldiLGSVHKLQarknhiteiklpdkssviELDLHSNLLTatDIPKLLTGMWRLQRLDLSENIIgiya 307
Cdd:COG4886 201 ----------------LGNLTNLE------------------ELDLSGNQLT--DLPEPLANLTNLETLDLSNNQL---- 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24644979 308 aagsDNTSELFILPNLMYMNLSANRLTRLHFDSPIPweRLTHLDASYNRIYAPAKVGIDEAFNLQSLHLEGNYINNFELT 387
Cdd:COG4886 241 ----TDLPELGNLTNLEELDLSNNQLTDLPPLANLT--NLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLELL 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24644979 388 PWKPHPSLKEVALYDNKFQPKGYKNITKFFNEIGVNVLEKTQYSQSNNTTPTCKPCIPDARDFPTSISADTNQTIDTKVN 467
Cdd:COG4886 315 ILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLLLTLLLTLGLLGLLEATLLTLALLLLTLLLLLL 394
|
410
....*....|....*
gi 24644979 468 PLSNDTYQWNVWNVL 482
Cdd:COG4886 395 TTTAGVLLLTLALLD 409
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
87-147 |
2.14e-11 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 59.08 E-value: 2.14e-11
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 24644979 87 PYLTSLQLRRGNLLGLHDEHFSKWPNMKILMLGGNNITRLSNECFKGLAQLWLLSLPGNGI 147
Cdd:pfam13855 1 PNLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
|
|
| PPP1R42 |
cd21340 |
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ... |
59-196 |
2.13e-08 |
|
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.
Pssm-ID: 411060 [Multi-domain] Cd Length: 220 Bit Score: 54.79 E-value: 2.13e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24644979 59 LKLMPNLRTLEL-ENCDSpdfTMNDLNQLPYLTSLQLRRGNLLGLhdEHFSKWPNMKILMLGGNNITRLSN--------- 128
Cdd:cd21340 20 LSLCKNLKVLYLyDNKIT---KIENLEFLTNLTHLYLQNNQIEKI--ENLENLVNLKKLYLGGNRISVVEGlenltnlee 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24644979 129 ------------------ECFKGLAQ-LWLLSLPGNGIQGLpwDVFQNLPELLHLDLSGNRIETLHE--NIFTGVPKLEM 187
Cdd:cd21340 95 lhienqrlppgekltfdpRSLAALSNsLRVLNISGNNIDSL--EPLAPLRNLEQLDASNNQISDLEEllDLLSSWPSLRE 172
|
....*....
gi 24644979 188 LLLNGNPLT 196
Cdd:cd21340 173 LDLTGNPVC 181
|
|
| PLN00113 |
PLN00113 |
leucine-rich repeat receptor-like protein kinase; Provisional |
157-379 |
4.93e-07 |
|
leucine-rich repeat receptor-like protein kinase; Provisional
Pssm-ID: 215061 [Multi-domain] Cd Length: 968 Bit Score: 52.54 E-value: 4.93e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24644979 157 NLPELLHLDLSGNRIETLHENIFTGVPKLEMLLLNGNPLTWIAPTSLKSLS-NLRLLDMSN---CGPLPDLSLPGAHTLI 232
Cdd:PLN00113 67 NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSsSLRYLNLSNnnfTGSIPRGSIPNLETLD 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24644979 233 LDN---SGVQRLDIlGSVHKLQArknhiteiklpdkssvieLDLHSNLLTAtDIPKLLTGMWRLQRLDLSEN-IIGiyaa 308
Cdd:PLN00113 147 LSNnmlSGEIPNDI-GSFSSLKV------------------LDLGGNVLVG-KIPNSLTNLTSLEFLTLASNqLVG---- 202
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 24644979 309 agsDNTSELFILPNLMYMNLSANRLTrlhfdSPIPWE-----RLTHLDASYNRIYAPAKVGIDEAFNLQSLHLEGN 379
Cdd:PLN00113 203 ---QIPRELGQMKSLKWIYLGYNNLS-----GEIPYEiggltSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQN 270
|
|
| LRR |
smart00370 |
Leucine-rich repeats, outliers; |
158-181 |
4.96e-03 |
|
Leucine-rich repeats, outliers;
Pssm-ID: 197688 [Multi-domain] Cd Length: 24 Bit Score: 34.63 E-value: 4.96e-03
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
68-482 |
1.91e-14 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 75.36 E-value: 1.91e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24644979 68 LELENCDSPDFTMNDLNQLPYLTSLQLRRGNLLGLHDEHFSKWPNMKILMLGGNNItrlsnecFKGLAQLWLLSLPGNGI 147
Cdd:COG4886 53 LSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGNEE-------LSNLTNLESLDLSGNQL 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24644979 148 QGLPWDvFQNLPELLHLDLSGNRIETLHENIFtGVPKLEMLLLNGNPLTWIaPTSLKSLSNLRLLDMSNCgPLPDLSLPg 227
Cdd:COG4886 126 TDLPEE-LANLTNLKELDLSNNQLTDLPEPLG-NLTNLKSLDLSNNQLTDL-PEELGNLTNLKELDLSNN-QITDLPEP- 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24644979 228 ahtlildnsgvqrldiLGSVHKLQarknhiteiklpdkssviELDLHSNLLTatDIPKLLTGMWRLQRLDLSENIIgiya 307
Cdd:COG4886 201 ----------------LGNLTNLE------------------ELDLSGNQLT--DLPEPLANLTNLETLDLSNNQL---- 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24644979 308 aagsDNTSELFILPNLMYMNLSANRLTRLHFDSPIPweRLTHLDASYNRIYAPAKVGIDEAFNLQSLHLEGNYINNFELT 387
Cdd:COG4886 241 ----TDLPELGNLTNLEELDLSNNQLTDLPPLANLT--NLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLELL 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24644979 388 PWKPHPSLKEVALYDNKFQPKGYKNITKFFNEIGVNVLEKTQYSQSNNTTPTCKPCIPDARDFPTSISADTNQTIDTKVN 467
Cdd:COG4886 315 ILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLLLTLLLTLGLLGLLEATLLTLALLLLTLLLLLL 394
|
410
....*....|....*
gi 24644979 468 PLSNDTYQWNVWNVL 482
Cdd:COG4886 395 TTTAGVLLLTLALLD 409
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
64-392 |
5.50e-14 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 73.81 E-value: 5.50e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24644979 64 NLRTLELENCDSPDFTMNDLNQLPYLTSLQLRrgnllglHDEHFSKWPNMKILMLGGNNITRLSNEcFKGLAQLWLLSLP 143
Cdd:COG4886 73 LLLLLSLLLLSLLLLGLTDLGDLTNLTELDLS-------GNEELSNLTNLESLDLSGNQLTDLPEE-LANLTNLKELDLS 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24644979 144 GNGIQGLPwDVFQNLPELLHLDLSGNRIETLHENIFtGVPKLEMLLLNGNPLTWIaPTSLKSLSNLRLLDMSNCG----P 219
Cdd:COG4886 145 NNQLTDLP-EPLGNLTNLKSLDLSNNQLTDLPEELG-NLTNLKELDLSNNQITDL-PEPLGNLTNLEELDLSGNQltdlP 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24644979 220 LPDLSLPGAHTLILDNSGVQRLDILGSVHKLQ---ARKNHITEI-KLPDKSSVIELDLHSNLLTATDIPKLLTGMWRLQR 295
Cdd:COG4886 222 EPLANLTNLETLDLSNNQLTDLPELGNLTNLEeldLSNNQLTDLpPLANLTNLKTLDLSNNQLTDLKLKELELLLGLNSL 301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24644979 296 LDLSENIIGIYAAAGSDNTSELFILPNLMYMNLSANRLTRLHFDSPIPWERLTHLDASYNRIYAPAKVGIDEAFNLQSLH 375
Cdd:COG4886 302 LLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLLLTLLLTLGLLGLLEATLLT 381
|
330
....*....|....*..
gi 24644979 376 LEGNYINNFELTPWKPH 392
Cdd:COG4886 382 LALLLLTLLLLLLTTTA 398
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
87-147 |
2.14e-11 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 59.08 E-value: 2.14e-11
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 24644979 87 PYLTSLQLRRGNLLGLHDEHFSKWPNMKILMLGGNNITRLSNECFKGLAQLWLLSLPGNGI 147
Cdd:pfam13855 1 PNLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
140-195 |
8.50e-11 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 57.53 E-value: 8.50e-11
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 24644979 140 LSLPGNGIQGLPWDVFQNLPELLHLDLSGNRIETLHENIFTGVPKLEMLLLNGNPL 195
Cdd:pfam13855 6 LDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
111-171 |
9.89e-10 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 54.45 E-value: 9.89e-10
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 24644979 111 PNMKILMLGGNNITRLSNECFKGLAQLWLLSLPGNGIQGLPWDVFQNLPELLHLDLSGNRI 171
Cdd:pfam13855 1 PNLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
|
|
| PPP1R42 |
cd21340 |
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ... |
59-196 |
2.13e-08 |
|
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.
Pssm-ID: 411060 [Multi-domain] Cd Length: 220 Bit Score: 54.79 E-value: 2.13e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24644979 59 LKLMPNLRTLEL-ENCDSpdfTMNDLNQLPYLTSLQLRRGNLLGLhdEHFSKWPNMKILMLGGNNITRLSN--------- 128
Cdd:cd21340 20 LSLCKNLKVLYLyDNKIT---KIENLEFLTNLTHLYLQNNQIEKI--ENLENLVNLKKLYLGGNRISVVEGlenltnlee 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24644979 129 ------------------ECFKGLAQ-LWLLSLPGNGIQGLpwDVFQNLPELLHLDLSGNRIETLHE--NIFTGVPKLEM 187
Cdd:cd21340 95 lhienqrlppgekltfdpRSLAALSNsLRVLNISGNNIDSL--EPLAPLRNLEQLDASNNQISDLEEllDLLSSWPSLRE 172
|
....*....
gi 24644979 188 LLLNGNPLT 196
Cdd:cd21340 173 LDLTGNPVC 181
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
44-301 |
1.65e-07 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 53.78 E-value: 1.65e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24644979 44 TKLTEFHMDSCE----KKVLKLMPNLRTLELENCDSPDFTmNDLNQLPYLTSLQLRRGNLLGLHDEhFSKWPNMKILMLG 119
Cdd:COG4886 159 TNLKSLDLSNNQltdlPEELGNLTNLKELDLSNNQITDLP-EPLGNLTNLEELDLSGNQLTDLPEP-LANLTNLETLDLS 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24644979 120 GNNITRLSNecFKGLAQLWLLSLPGNGIQGLPwdVFQNLPELLHLDLSGNRIETLHENIFTGVPKLEMLLLNGNPLTWIA 199
Cdd:COG4886 237 NNQLTDLPE--LGNLTNLEELDLSNNQLTDLP--PLANLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLE 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24644979 200 PTSLKSLSNLRLLDMSNCGPLPDLSLPGAHTLILDNSGVQRLDILGSVHKLQARKNHITEIKLPDKSSVIELDLHSNLLT 279
Cdd:COG4886 313 LLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLLLTLLLTLGLLGLLEATLLTLALLLLTLLLL 392
|
250 260
....*....|....*....|..
gi 24644979 280 ATDIPKLLTGMWRLQRLDLSEN 301
Cdd:COG4886 393 LLTTTAGVLLLTLALLDAVNTE 414
|
|
| PLN00113 |
PLN00113 |
leucine-rich repeat receptor-like protein kinase; Provisional |
157-379 |
4.93e-07 |
|
leucine-rich repeat receptor-like protein kinase; Provisional
Pssm-ID: 215061 [Multi-domain] Cd Length: 968 Bit Score: 52.54 E-value: 4.93e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24644979 157 NLPELLHLDLSGNRIETLHENIFTGVPKLEMLLLNGNPLTWIAPTSLKSLS-NLRLLDMSN---CGPLPDLSLPGAHTLI 232
Cdd:PLN00113 67 NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSsSLRYLNLSNnnfTGSIPRGSIPNLETLD 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24644979 233 LDN---SGVQRLDIlGSVHKLQArknhiteiklpdkssvieLDLHSNLLTAtDIPKLLTGMWRLQRLDLSEN-IIGiyaa 308
Cdd:PLN00113 147 LSNnmlSGEIPNDI-GSFSSLKV------------------LDLGGNVLVG-KIPNSLTNLTSLEFLTLASNqLVG---- 202
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 24644979 309 agsDNTSELFILPNLMYMNLSANRLTrlhfdSPIPWE-----RLTHLDASYNRIYAPAKVGIDEAFNLQSLHLEGN 379
Cdd:PLN00113 203 ---QIPRELGQMKSLKWIYLGYNNLS-----GEIPYEiggltSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQN 270
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
120-419 |
9.05e-07 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 51.47 E-value: 9.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24644979 120 GNNITRLSNECFKGLAQLWLLSLPGNGIQGLPWDVFQNLPELLHLDLSGNRIETLHENIFTGVPKLEMLLLNGNPLTWIA 199
Cdd:COG4886 9 TLKLLLLLLLELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLG 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24644979 200 PTSLKSLSNLRLLDMSNCGPLPDLSlpgahtlildnsGVQRLDIlgsvhklqaRKNHITEI--KLPDKSSVIELDLHSNL 277
Cdd:COG4886 89 LTDLGDLTNLTELDLSGNEELSNLT------------NLESLDL---------SGNQLTDLpeELANLTNLKELDLSNNQ 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24644979 278 LtaTDIPKLLTGMWRLQRLDLSEN-IIGIYAAAG----------SDN-----TSELFILPNLMYMNLSANRLTRLhfDSP 341
Cdd:COG4886 148 L--TDLPEPLGNLTNLKSLDLSNNqLTDLPEELGnltnlkeldlSNNqitdlPEPLGNLTNLEELDLSGNQLTDL--PEP 223
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 24644979 342 IP-WERLTHLDASYNRIYAPAKVGidEAFNLQSLHLEGNYINnfELTPWKPHPSLKEVALYDNKFQPKGYKNITKFFNE 419
Cdd:COG4886 224 LAnLTNLETLDLSNNQLTDLPELG--NLTNLEELDLSNNQLT--DLPPLANLTNLKTLDLSNNQLTDLKLKELELLLGL 298
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
159-217 |
1.26e-06 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 45.59 E-value: 1.26e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 24644979 159 PELLHLDLSGNRIETLHENIFTGVPKLEMLLLNGNPLTWIAPTSLKSLSNLRLLDMSNC 217
Cdd:pfam13855 1 PNLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGN 59
|
|
| PLN00113 |
PLN00113 |
leucine-rich repeat receptor-like protein kinase; Provisional |
81-379 |
1.51e-06 |
|
leucine-rich repeat receptor-like protein kinase; Provisional
Pssm-ID: 215061 [Multi-domain] Cd Length: 968 Bit Score: 51.00 E-value: 1.51e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24644979 81 NDLNQLPYLTSLQLRRGNLLGLHDEHFSKWPNMKILMLGGNNITRLSNECFKGLAQLWLLSLPGNGIQGlpwdvfqNLPE 160
Cdd:PLN00113 230 YEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSG-------EIPE 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24644979 161 LLhLDLSGNRIETLHENIFTG--------VPKLEMLLLNGNPLTWIAPTSLKSLSNLRLLDMSN---CGPLPDLSLPGAH 229
Cdd:PLN00113 303 LV-IQLQNLEILHLFSNNFTGkipvaltsLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTnnlTGEIPEGLCSSGN 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24644979 230 --TLILDNSGVQ-----RLDILGSVHKLQARKNHITE------IKLPdksSVIELDLHSNLLTAtDIPKLLTGMWRLQRL 296
Cdd:PLN00113 382 lfKLILFSNSLEgeipkSLGACRSLRRVRLQDNSFSGelpsefTKLP---LVYFLDISNNNLQG-RINSRKWDMPSLQML 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24644979 297 DLSENII--GIYAAAGSDNTSELFI---------------LPNLMYMNLSANRLTRLHFDSPIPWERLTHLDASYNRIYA 359
Cdd:PLN00113 458 SLARNKFfgGLPDSFGSKRLENLDLsrnqfsgavprklgsLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSG 537
|
330 340
....*....|....*....|
gi 24644979 360 PAKVGIDEAFNLQSLHLEGN 379
Cdd:PLN00113 538 QIPASFSEMPVLSQLDLSQN 557
|
|
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
131-334 |
1.89e-06 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 50.05 E-value: 1.89e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24644979 131 FKGLAQLWLLSLPGNGIQGLPWDVFQNL---PELLHLDLSGNRIETLHENIFTGV-----PKLEMLLLNGNPLTWIAPTS 202
Cdd:cd00116 77 LTKGCGLQELDLSDNALGPDGCGVLESLlrsSSLQELKLNNNGLGDRGLRLLAKGlkdlpPALEKLVLGRNRLEGASCEA 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24644979 203 ----LKSLSNLRLLDMSNCGplpdLSLPGAHTL---ILDNSGVQRLDIlgsvhklqaRKNHITEIK-------LPDKSSV 268
Cdd:cd00116 157 lakaLRANRDLKELNLANNG----IGDAGIRALaegLKANCNLEVLDL---------NNNGLTDEGasalaetLASLKSL 223
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24644979 269 IELDLHSNLLTATDIPKLLTGMW----RLQRLDLSENIIGiyAAAGSDNTSELFILPNLMYMNLSANRLT 334
Cdd:cd00116 224 EVLNLGDNNLTDAGAAALASALLspniSLLTLSLSCNDIT--DDGAKDLAEVLAEKESLLELDLRGNKFG 291
|
|
| PRK15370 |
PRK15370 |
type III secretion system effector E3 ubiquitin transferase SlrP; |
230-404 |
8.95e-06 |
|
type III secretion system effector E3 ubiquitin transferase SlrP;
Pssm-ID: 185268 [Multi-domain] Cd Length: 754 Bit Score: 48.54 E-value: 8.95e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24644979 230 TLILDNSGVQRL--DILGSVHKLQARKNHITEI--KLPDKSSVIELDLHSnlltATDIPKLLTGMwrLQRLDLSENIIgi 305
Cdd:PRK15370 203 TLILDNNELKSLpeNLQGNIKTLYANSNQLTSIpaTLPDTIQEMELSINR----ITELPERLPSA--LQSLDLFHNKI-- 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24644979 306 yaAAGSDNTSElfilpNLMYMNLSANRLTRL--HFDSPIpwerlTHLDASYNRIYA-PAKVgideAFNLQSLHLEGNYIN 382
Cdd:PRK15370 275 --SCLPENLPE-----ELRYLSVYDNSIRTLpaHLPSGI-----THLNVQSNSLTAlPETL----PPGLKTLEAGENALT 338
|
170 180
....*....|....*....|..
gi 24644979 383 NFeltPWKPHPSLKEVALYDNK 404
Cdd:PRK15370 339 SL---PASLPPELQVLDVSKNQ 357
|
|
| PLN00113 |
PLN00113 |
leucine-rich repeat receptor-like protein kinase; Provisional |
118-418 |
2.52e-05 |
|
leucine-rich repeat receptor-like protein kinase; Provisional
Pssm-ID: 215061 [Multi-domain] Cd Length: 968 Bit Score: 47.15 E-value: 2.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24644979 118 LGGNNITRLSNECFKGLAQLWLLSLPGNGIQG-LPWDVFQNLPELLHLDLSGNRietlheniFTG------VPKLEMLLL 190
Cdd:PLN00113 76 LSGKNISGKISSAIFRLPYIQTINLSNNQLSGpIPDDIFTTSSSLRYLNLSNNN--------FTGsiprgsIPNLETLDL 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24644979 191 NGNPLTWIAPTSLKSLSNLRLLDMSNCgplpdlSLPGAHTLILDNsgvqrldiLGSVHKLQARKNHIT---EIKLPDKSS 267
Cdd:PLN00113 148 SNNMLSGEIPNDIGSFSSLKVLDLGGN------VLVGKIPNSLTN--------LTSLEFLTLASNQLVgqiPRELGQMKS 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24644979 268 VIELDLHSNLLTAtDIPKLLTGMWRLQRLDLseniigIYAAAGSDNTSELFILPNLMYMNLSANRLTrlhfdSPIP---- 343
Cdd:PLN00113 214 LKWIYLGYNNLSG-EIPYEIGGLTSLNHLDL------VYNNLTGPIPSSLGNLKNLQYLFLYQNKLS-----GPIPpsif 281
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 24644979 344 -WERLTHLDASYNRIYAPAKVGIDEAFNLQSLHLEGNYINNFELTPWKPHPSLKEVALYDNKFQPKGYKNITKFFN 418
Cdd:PLN00113 282 sLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNN 357
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
78-296 |
1.93e-04 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 44.01 E-value: 1.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24644979 78 FTMNDLNQLPYLTSLQLRRGNLLGLHdEHFSKWPNMKILMLGGNNITRLSNECF----KGLAQLWLLSLPGNGI--QGLP 151
Cdd:COG5238 176 ALQNNSVETVYLGCNQIGDEGIEELA-EALTQNTTVTTLWLKRNPIGDEGAEILaealKGNKSLTTLDLSNNQIgdEGVI 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24644979 152 --WDVFQNLPELLHLDLSGNRIETLH----ENIFTGVPKLEMLLLNGNPLT---WIA-PTSLKSLSNLRLLDMSNCGplp 221
Cdd:COG5238 255 alAEALKNNTTVETLYLSGNQIGAEGaialAKALQGNTTLTSLDLSVNRIGdegAIAlAEGLQGNKTLHTLNLAYNG--- 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24644979 222 dLSLPGAHTL---ILDNSGVQRLDILG-------------------SVHKLQARKNHITE------IKLPDKSSVIELDL 273
Cdd:COG5238 332 -IGAQGAIALakaLQENTTLHSLDLSDnqigdegaialakylegntTLRELNLGKNNIGKqgaealIDALQTNRLHTLIL 410
|
250 260
....*....|....*....|...
gi 24644979 274 HSNLLTATDIPKLLTGMWRLQRL 296
Cdd:COG5238 411 DGNLIGAEAQQRLEQLLERIKSV 433
|
|
| PRK15387 |
PRK15387 |
type III secretion system effector E3 ubiquitin transferase SspH2; |
115-336 |
1.24e-03 |
|
type III secretion system effector E3 ubiquitin transferase SspH2;
Pssm-ID: 185285 [Multi-domain] Cd Length: 788 Bit Score: 41.69 E-value: 1.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24644979 115 ILMLGGNNITRLSnECFKglAQLWLLSLPGNGIQGLPwdvfQNLPELLHLDLSGNRIETLHenifTGVPKLEMLLLNGNP 194
Cdd:PRK15387 205 VLNVGESGLTTLP-DCLP--AHITTLVIPDNNLTSLP----ALPPELRTLEVSGNQLTSLP----VLPPGLLELSIFSNP 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24644979 195 LTWIaPTSLKSLSNLRLLDmSNCGPLPDLSlPGAHTLILDNSGVQRLDILGS-VHKLQARKNHITEI-KLPdkSSVIELD 272
Cdd:PRK15387 274 LTHL-PALPSGLCKLWIFG-NQLTSLPVLP-PGLQELSVSDNQLASLPALPSeLCKLWAYNNQLTSLpTLP--SGLQELS 348
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24644979 273 LHSNLLTA-TDIPKLLTGMW----RLQRLDLSENIIGIYAAAGSDNTSeLFILPN-LMYMNLSANRLTRL 336
Cdd:PRK15387 349 VSDNQLASlPTLPSELYKLWaynnRLTSLPALPSGLKELIVSGNRLTS-LPVLPSeLKELMVSGNRLTSL 417
|
|
| LRR |
smart00370 |
Leucine-rich repeats, outliers; |
158-181 |
4.96e-03 |
|
Leucine-rich repeats, outliers;
Pssm-ID: 197688 [Multi-domain] Cd Length: 24 Bit Score: 34.63 E-value: 4.96e-03
|
| LRR_TYP |
smart00369 |
Leucine-rich repeats, typical (most populated) subfamily; |
158-181 |
4.96e-03 |
|
Leucine-rich repeats, typical (most populated) subfamily;
Pssm-ID: 197687 [Multi-domain] Cd Length: 24 Bit Score: 34.63 E-value: 4.96e-03
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
82-357 |
5.92e-03 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 39.00 E-value: 5.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24644979 82 DLNQLPY--LTSLQLRRGNLLGLHDEHFSKWPNMKILMLGGNNItrlSNECFKGLA-------QLWLLSLPGNGI--QGL 150
Cdd:COG5238 149 DPLGGNAvhLLGLAARLGLLAAISMAKALQNNSVETVYLGCNQI---GDEGIEELAealtqntTVTTLWLKRNPIgdEGA 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24644979 151 P--WDVFQNLPELLHLDLSGNRIetlheniftGVPKLEMLLlngnpltwiapTSLKSLSNLRLLDMSncgplpdLSLPGA 228
Cdd:COG5238 226 EilAEALKGNKSLTTLDLSNNQI---------GDEGVIALA-----------EALKNNTTVETLYLS-------GNQIGA 278
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24644979 229 HTLILDNSGVQRLDilgSVHKLQARKNHITEI-------KLPDKSSVIELDLHSNLLTATDIPKLLTGMW---RLQRLDL 298
Cdd:COG5238 279 EGAIALAKALQGNT---TLTSLDLSVNRIGDEgaialaeGLQGNKTLHTLNLAYNGIGAQGAIALAKALQentTLHSLDL 355
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 24644979 299 SENIIGIYAAAG-----SDNTSELFIlpNLMYMNLSA------------NRLTRLHFDS-PIPWERLTHLDASYNRI 357
Cdd:COG5238 356 SDNQIGDEGAIAlakylEGNTTLREL--NLGKNNIGKqgaealidalqtNRLHTLILDGnLIGAEAQQRLEQLLERI 430
|
|
|