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Conserved domains on  [gi|24647135|ref|NP_650455|]
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uncharacterized protein Dmel_CG6171, isoform A [Drosophila melanogaster]

Protein Classification

zf-CCHH domain-containing protein( domain architecture ID 10563259)

zf-CCHH domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
zf-CCHH pfam10283
PBZ domain; This domain is a zinc-finger motif that in humans is part of the APLF, aprataxin- ...
 161-183 3.32e-09

PBZ domain; This domain is a zinc-finger motif that in humans is part of the APLF, aprataxin- and PNK-like forkhead association domain-containing protein. The ZnF is highly conserved both in primary sequence and in the spacing between the putative zinc coordinating residues and is configured CX5CX6HX5H. Many of the proteins containing the APLF-like ZnF are involved in DNA strand break repair and/or contain domains implicated in DNA metabolism.


:

Pssm-ID: 463043 [Multi-domain]  Cd Length: 25  Bit Score: 50.19  E-value: 3.32e-09
                          10        20
                  ....*....|....*....|...
gi 24647135   161 PACPFGNACYRRNPVHFQDYSHP 183
Cdd:pfam10283   2 PPCKYGAKCYRKNPQHFKEFSHP 24
zf-CCHH pfam10283
PBZ domain; This domain is a zinc-finger motif that in humans is part of the APLF, aprataxin- ...
 120-144 2.85e-06

PBZ domain; This domain is a zinc-finger motif that in humans is part of the APLF, aprataxin- and PNK-like forkhead association domain-containing protein. The ZnF is highly conserved both in primary sequence and in the spacing between the putative zinc coordinating residues and is configured CX5CX6HX5H. Many of the proteins containing the APLF-like ZnF are involved in DNA strand break repair and/or contain domains implicated in DNA metabolism.


:

Pssm-ID: 463043 [Multi-domain]  Cd Length: 25  Bit Score: 42.10  E-value: 2.85e-06
                          10        20
                  ....*....|....*....|....*
gi 24647135   120 RTSCRFGIRCYRRNPAHRSAEAHPG 144
Cdd:pfam10283   1 RPPCKYGAKCYRKNPQHFKEFSHPG 25
 
Name Accession Description Interval E-value
zf-CCHH pfam10283
PBZ domain; This domain is a zinc-finger motif that in humans is part of the APLF, aprataxin- ...
 161-183 3.32e-09

PBZ domain; This domain is a zinc-finger motif that in humans is part of the APLF, aprataxin- and PNK-like forkhead association domain-containing protein. The ZnF is highly conserved both in primary sequence and in the spacing between the putative zinc coordinating residues and is configured CX5CX6HX5H. Many of the proteins containing the APLF-like ZnF are involved in DNA strand break repair and/or contain domains implicated in DNA metabolism.


Pssm-ID: 463043 [Multi-domain]  Cd Length: 25  Bit Score: 50.19  E-value: 3.32e-09
                          10        20
                  ....*....|....*....|...
gi 24647135   161 PACPFGNACYRRNPVHFQDYSHP 183
Cdd:pfam10283   2 PPCKYGAKCYRKNPQHFKEFSHP 24
zf-CCHH pfam10283
PBZ domain; This domain is a zinc-finger motif that in humans is part of the APLF, aprataxin- ...
 120-144 2.85e-06

PBZ domain; This domain is a zinc-finger motif that in humans is part of the APLF, aprataxin- and PNK-like forkhead association domain-containing protein. The ZnF is highly conserved both in primary sequence and in the spacing between the putative zinc coordinating residues and is configured CX5CX6HX5H. Many of the proteins containing the APLF-like ZnF are involved in DNA strand break repair and/or contain domains implicated in DNA metabolism.


Pssm-ID: 463043 [Multi-domain]  Cd Length: 25  Bit Score: 42.10  E-value: 2.85e-06
                          10        20
                  ....*....|....*....|....*
gi 24647135   120 RTSCRFGIRCYRRNPAHRSAEAHPG 144
Cdd:pfam10283   1 RPPCKYGAKCYRKNPQHFKEFSHPG 25
 
Name Accession Description Interval E-value
zf-CCHH pfam10283
PBZ domain; This domain is a zinc-finger motif that in humans is part of the APLF, aprataxin- ...
 161-183 3.32e-09

PBZ domain; This domain is a zinc-finger motif that in humans is part of the APLF, aprataxin- and PNK-like forkhead association domain-containing protein. The ZnF is highly conserved both in primary sequence and in the spacing between the putative zinc coordinating residues and is configured CX5CX6HX5H. Many of the proteins containing the APLF-like ZnF are involved in DNA strand break repair and/or contain domains implicated in DNA metabolism.


Pssm-ID: 463043 [Multi-domain]  Cd Length: 25  Bit Score: 50.19  E-value: 3.32e-09
                          10        20
                  ....*....|....*....|...
gi 24647135   161 PACPFGNACYRRNPVHFQDYSHP 183
Cdd:pfam10283   2 PPCKYGAKCYRKNPQHFKEFSHP 24
zf-CCHH pfam10283
PBZ domain; This domain is a zinc-finger motif that in humans is part of the APLF, aprataxin- ...
 120-144 2.85e-06

PBZ domain; This domain is a zinc-finger motif that in humans is part of the APLF, aprataxin- and PNK-like forkhead association domain-containing protein. The ZnF is highly conserved both in primary sequence and in the spacing between the putative zinc coordinating residues and is configured CX5CX6HX5H. Many of the proteins containing the APLF-like ZnF are involved in DNA strand break repair and/or contain domains implicated in DNA metabolism.


Pssm-ID: 463043 [Multi-domain]  Cd Length: 25  Bit Score: 42.10  E-value: 2.85e-06
                          10        20
                  ....*....|....*....|....*
gi 24647135   120 RTSCRFGIRCYRRNPAHRSAEAHPG 144
Cdd:pfam10283   1 RPPCKYGAKCYRKNPQHFKEFSHPG 25
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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