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Conserved domains on  [gi|24649954|ref|NP_651348|]
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uncharacterized protein Dmel_CG13653 [Drosophila melanogaster]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TPX2_importin super family cl13625
Cell cycle regulated microtubule associated protein; This domain is found in eukaryotes. This ...
 51-128 8.06e-03

Cell cycle regulated microtubule associated protein; This domain is found in eukaryotes. This domain is typically between 127 to 182 amino acids in length. This domain is found associated with pfam06886. This domain is found in the protein TPX2 (a.k.a p100) which is involved in cell cycling. It is only expressed between the start of the S phase and completion of cytokinesis. The microtubule-associated protein TPX2 has been reported to be crucial for mitotic spindle formation. This domain is close to the C terminal of TPX2. The protein importin alpha regulates the activity of TPX2 by binding to the nuclear localization signal in this domain.


The actual alignment was detected with superfamily member pfam12214:

Pssm-ID: 463495 [Multi-domain]  Cd Length: 129  Bit Score: 35.36  E-value: 8.06e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24649954    51 QEKVELLKSQKDQQGTKELlNRFILENPKALPKAK--PQPDQFMGLYRSILKKltASKRMLKTSLNFELADRPHKTLKRP 128
Cdd:pfam12214  23 LEAEELEKIQQYKFKARPL-NRKILEAPSLPLKKPstPRLTEFQEFHLETEKR--AQQRSSKKSTSEEELEKKHKFKARP 99
 
Name Accession Description Interval E-value
TPX2_importin pfam12214
Cell cycle regulated microtubule associated protein; This domain is found in eukaryotes. This ...
 51-128 8.06e-03

Cell cycle regulated microtubule associated protein; This domain is found in eukaryotes. This domain is typically between 127 to 182 amino acids in length. This domain is found associated with pfam06886. This domain is found in the protein TPX2 (a.k.a p100) which is involved in cell cycling. It is only expressed between the start of the S phase and completion of cytokinesis. The microtubule-associated protein TPX2 has been reported to be crucial for mitotic spindle formation. This domain is close to the C terminal of TPX2. The protein importin alpha regulates the activity of TPX2 by binding to the nuclear localization signal in this domain.


Pssm-ID: 463495 [Multi-domain]  Cd Length: 129  Bit Score: 35.36  E-value: 8.06e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24649954    51 QEKVELLKSQKDQQGTKELlNRFILENPKALPKAK--PQPDQFMGLYRSILKKltASKRMLKTSLNFELADRPHKTLKRP 128
Cdd:pfam12214  23 LEAEELEKIQQYKFKARPL-NRKILEAPSLPLKKPstPRLTEFQEFHLETEKR--AQQRSSKKSTSEEELEKKHKFKARP 99
 
Name Accession Description Interval E-value
TPX2_importin pfam12214
Cell cycle regulated microtubule associated protein; This domain is found in eukaryotes. This ...
 51-128 8.06e-03

Cell cycle regulated microtubule associated protein; This domain is found in eukaryotes. This domain is typically between 127 to 182 amino acids in length. This domain is found associated with pfam06886. This domain is found in the protein TPX2 (a.k.a p100) which is involved in cell cycling. It is only expressed between the start of the S phase and completion of cytokinesis. The microtubule-associated protein TPX2 has been reported to be crucial for mitotic spindle formation. This domain is close to the C terminal of TPX2. The protein importin alpha regulates the activity of TPX2 by binding to the nuclear localization signal in this domain.


Pssm-ID: 463495 [Multi-domain]  Cd Length: 129  Bit Score: 35.36  E-value: 8.06e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24649954    51 QEKVELLKSQKDQQGTKELlNRFILENPKALPKAK--PQPDQFMGLYRSILKKltASKRMLKTSLNFELADRPHKTLKRP 128
Cdd:pfam12214  23 LEAEELEKIQQYKFKARPL-NRKILEAPSLPLKKPstPRLTEFQEFHLETEKR--AQQRSSKKSTSEEELEKKHKFKARP 99
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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