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Conserved domains on  [gi|320543361|ref|NP_651573|]
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tusp, isoform D [Drosophila melanogaster]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Tub super family cl08308
Tub family;
1248-1425 1.64e-27

Tub family;


The actual alignment was detected with superfamily member pfam01167:

Pssm-ID: 460094  Cd Length: 251  Bit Score: 113.06  E-value: 1.64e-27
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320543361  1248 PRSSPASPAASKKNKRQQSNSPIR----HILNSP--LLNRRQRKKQSIIESSDDEGNQTNGSGEESNnagngkqyRDLET 1321
Cdd:pfam01167   92 PPYNGANPSKSRSSFGSKKVSPGRyelaAVSYELnvLGTRGPRRMKVIIPSIPASGQQVPIQPQSES--------SLLED 163
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320543361  1322 FQKAQLRQKLkrgkiepngsascanpapvrrefVMHNKAPMWNEMSQVYQLDFGGRVTQESAKNFQI---EFRGKQVMQF 1398
Cdd:pfam01167  164 FKSGRLDELL-----------------------VLKNKPPRWNEQLQCYCLNFHGRVTVASVKNFQLvapEDQDKVILQF 220
                          170       180
                   ....*....|....*....|....*..
gi 320543361  1399 GRIDGNAYTLDFQYPFSALQAFAVALA 1425
Cdd:pfam01167  221 GKVGKDMFTMDYRYPLSAFQAFAICLS 247
WD40 super family cl43672
WD40 repeat [General function prediction only];
81-221 2.09e-06

WD40 repeat [General function prediction only];


The actual alignment was detected with superfamily member COG2319:

Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 51.84  E-value: 2.09e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320543361   81 LRGHRSDVILVKWNEPYQKLASCDSSGIIFVWiKYEGRWSIELINDRNTPVTHFSWSHDGRMALICYQDGFVLVGSVAGQ 160
Cdd:COG2319   242 LTGHSGSVRSVAFSPDGRLLASGSADGTVRLW-DLATGELLRTLTGHSGGVNSVAFSPDGKLLASGSDDGTVRLWDLATG 320
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 320543361  161 RYWSSMLNLESTITCGIWTPDDQQVYFGTTQGQVIVMDVHGAMVSQVQLSNDVPITSMAWS 221
Cdd:COG2319   321 KLLRTLTGHTGAVRSVAFSPDGKTLASGSDDGTVRLWDLATGELLRTLTGHTGAVTSVAFS 381
 
Name Accession Description Interval E-value
Tub pfam01167
Tub family;
1248-1425 1.64e-27

Tub family;


Pssm-ID: 460094  Cd Length: 251  Bit Score: 113.06  E-value: 1.64e-27
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320543361  1248 PRSSPASPAASKKNKRQQSNSPIR----HILNSP--LLNRRQRKKQSIIESSDDEGNQTNGSGEESNnagngkqyRDLET 1321
Cdd:pfam01167   92 PPYNGANPSKSRSSFGSKKVSPGRyelaAVSYELnvLGTRGPRRMKVIIPSIPASGQQVPIQPQSES--------SLLED 163
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320543361  1322 FQKAQLRQKLkrgkiepngsascanpapvrrefVMHNKAPMWNEMSQVYQLDFGGRVTQESAKNFQI---EFRGKQVMQF 1398
Cdd:pfam01167  164 FKSGRLDELL-----------------------VLKNKPPRWNEQLQCYCLNFHGRVTVASVKNFQLvapEDQDKVILQF 220
                          170       180
                   ....*....|....*....|....*..
gi 320543361  1399 GRIDGNAYTLDFQYPFSALQAFAVALA 1425
Cdd:pfam01167  221 GKVGKDMFTMDYRYPLSAFQAFAICLS 247
WD40 COG2319
WD40 repeat [General function prediction only];
81-221 2.09e-06

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 51.84  E-value: 2.09e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320543361   81 LRGHRSDVILVKWNEPYQKLASCDSSGIIFVWiKYEGRWSIELINDRNTPVTHFSWSHDGRMALICYQDGFVLVGSVAGQ 160
Cdd:COG2319   242 LTGHSGSVRSVAFSPDGRLLASGSADGTVRLW-DLATGELLRTLTGHSGGVNSVAFSPDGKLLASGSDDGTVRLWDLATG 320
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 320543361  161 RYWSSMLNLESTITCGIWTPDDQQVYFGTTQGQVIVMDVHGAMVSQVQLSNDVPITSMAWS 221
Cdd:COG2319   321 KLLRTLTGHTGAVRSVAFSPDGKTLASGSDDGTVRLWDLATGELLRTLTGHTGAVTSVAFS 381
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
81-359 2.79e-05

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 47.71  E-value: 2.79e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320543361   81 LRGHRSDVILVKWNEPYQKLASCDSSGIIFVWiKYEGRWSIELINDRNTPVTHFSWSHDGRMALICYQDGFVLVGSVAGQ 160
Cdd:cd00200     5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVW-DLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320543361  161 RYWSSMLNLESTITCGIWTPDDQQVYFGTTQGQVIVMDVHGAMVSQVQLSNDVPITSMAWS-CEKF----------KMEE 229
Cdd:cd00200    84 ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSpDGTFvasssqdgtiKLWD 163
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320543361  230 GEEAEPGVTNAAKRSFVLAVSF-QNGYIYLLKSFDDV-------SPAHINTC---LNGALGMVmeWSNSRELLAVAgtlr 298
Cdd:cd00200   164 LRTGKCVATLTGHTGEVNSVAFsPDGEKLLSSSSDGTiklwdlsTGKCLGTLrghENGVNSVA--FSPDGYLLASG---- 237
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 320543361  299 tGVDGTktedmgtpscytnlVKFY-TETGTCLYQahIPCSSATVSAITWgHNDKRLFIATGT 359
Cdd:cd00200   238 -SEDGT--------------IRVWdLRTGECVQT--LSGHTNSVTSLAW-SPDGKRLASGSA 281
 
Name Accession Description Interval E-value
Tub pfam01167
Tub family;
1248-1425 1.64e-27

Tub family;


Pssm-ID: 460094  Cd Length: 251  Bit Score: 113.06  E-value: 1.64e-27
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320543361  1248 PRSSPASPAASKKNKRQQSNSPIR----HILNSP--LLNRRQRKKQSIIESSDDEGNQTNGSGEESNnagngkqyRDLET 1321
Cdd:pfam01167   92 PPYNGANPSKSRSSFGSKKVSPGRyelaAVSYELnvLGTRGPRRMKVIIPSIPASGQQVPIQPQSES--------SLLED 163
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320543361  1322 FQKAQLRQKLkrgkiepngsascanpapvrrefVMHNKAPMWNEMSQVYQLDFGGRVTQESAKNFQI---EFRGKQVMQF 1398
Cdd:pfam01167  164 FKSGRLDELL-----------------------VLKNKPPRWNEQLQCYCLNFHGRVTVASVKNFQLvapEDQDKVILQF 220
                          170       180
                   ....*....|....*....|....*..
gi 320543361  1399 GRIDGNAYTLDFQYPFSALQAFAVALA 1425
Cdd:pfam01167  221 GKVGKDMFTMDYRYPLSAFQAFAICLS 247
WD40 COG2319
WD40 repeat [General function prediction only];
81-221 2.09e-06

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 51.84  E-value: 2.09e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320543361   81 LRGHRSDVILVKWNEPYQKLASCDSSGIIFVWiKYEGRWSIELINDRNTPVTHFSWSHDGRMALICYQDGFVLVGSVAGQ 160
Cdd:COG2319   242 LTGHSGSVRSVAFSPDGRLLASGSADGTVRLW-DLATGELLRTLTGHSGGVNSVAFSPDGKLLASGSDDGTVRLWDLATG 320
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 320543361  161 RYWSSMLNLESTITCGIWTPDDQQVYFGTTQGQVIVMDVHGAMVSQVQLSNDVPITSMAWS 221
Cdd:COG2319   321 KLLRTLTGHTGAVRSVAFSPDGKTLASGSDDGTVRLWDLATGELLRTLTGHTGAVTSVAFS 381
WD40 COG2319
WD40 repeat [General function prediction only];
74-221 4.11e-06

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 51.07  E-value: 4.11e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320543361   74 PLRTnynLRGHRSDVILVKWNEPYQKLASCDSSGIIFVWiKYEGRWSIELINDRNTPVTHFSWSHDGRMALICYQDGFVL 153
Cdd:COG2319   196 LLRT---LTGHTGAVRSVAFSPDGKLLASGSADGTVRLW-DLATGKLLRTLTGHSGSVRSVAFSPDGRLLASGSADGTVR 271
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 320543361  154 VGSVAGQRYWSSMLNLESTITCGIWTPDDQQVYFGTTQGQVIVMDVHGAMVSQVQLSNDVPITSMAWS 221
Cdd:COG2319   272 LWDLATGELLRTLTGHSGGVNSVAFSPDGKLLASGSDDGTVRLWDLATGKLLRTLTGHTGAVRSVAFS 339
WD40 COG2319
WD40 repeat [General function prediction only];
81-380 1.24e-05

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 49.52  E-value: 1.24e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320543361   81 LRGHRSDVILVKWNEPYQKLASCDSSGIIFVWIKYEGRwSIELINDRNTPVTHFSWSHDGRMALICYQDGFVLVGSVAGQ 160
Cdd:COG2319   116 LTGHTGAVRSVAFSPDGKTLASGSADGTVRLWDLATGK-LLRTLTGHSGAVTSVAFSPDGKLLASGSDDGTVRLWDLATG 194
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320543361  161 RYWSSMLNLESTITCGIWTPDDQQVYFGTTQGQVIVMDVHGAMVSQVQLSNDVPITSMAWScekfkmeegeeaeP-GVTn 239
Cdd:COG2319   195 KLLRTLTGHTGAVRSVAFSPDGKLLASGSADGTVRLWDLATGKLLRTLTGHSGSVRSVAFS-------------PdGRL- 260
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320543361  240 aakrsfvLAVSFQNGYIYLLksfdDVSPAHINTCLNGALGMV--MEWSNSRELLAVAGTlrtgvDGTktedmgtpscytn 317
Cdd:COG2319   261 -------LASGSADGTVRLW----DLATGELLRTLTGHSGGVnsVAFSPDGKLLASGSD-----DGT------------- 311
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 320543361  318 lVKFY-TETGTCL--YQAHipcsSATVSAITWGHNDKRLfiATGTQVHIAWVsRRVASLQLLCRLE 380
Cdd:COG2319   312 -VRLWdLATGKLLrtLTGH----TGAVRSVAFSPDGKTL--ASGSDDGTVRL-WDLATGELLRTLT 369
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
81-359 2.79e-05

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 47.71  E-value: 2.79e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320543361   81 LRGHRSDVILVKWNEPYQKLASCDSSGIIFVWiKYEGRWSIELINDRNTPVTHFSWSHDGRMALICYQDGFVLVGSVAGQ 160
Cdd:cd00200     5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVW-DLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320543361  161 RYWSSMLNLESTITCGIWTPDDQQVYFGTTQGQVIVMDVHGAMVSQVQLSNDVPITSMAWS-CEKF----------KMEE 229
Cdd:cd00200    84 ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSpDGTFvasssqdgtiKLWD 163
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320543361  230 GEEAEPGVTNAAKRSFVLAVSF-QNGYIYLLKSFDDV-------SPAHINTC---LNGALGMVmeWSNSRELLAVAgtlr 298
Cdd:cd00200   164 LRTGKCVATLTGHTGEVNSVAFsPDGEKLLSSSSDGTiklwdlsTGKCLGTLrghENGVNSVA--FSPDGYLLASG---- 237
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 320543361  299 tGVDGTktedmgtpscytnlVKFY-TETGTCLYQahIPCSSATVSAITWgHNDKRLFIATGT 359
Cdd:cd00200   238 -SEDGT--------------IRVWdLRTGECVQT--LSGHTNSVTSLAW-SPDGKRLASGSA 281
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
79-221 8.57e-05

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 46.17  E-value: 8.57e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320543361   79 YNLRGHRSDVILVKWNEPYQKLASCDSSGIIFVWIKYEGRwSIELINDRNTPVTHFSWSHDGRMALICYQDGFVLVGSVA 158
Cdd:cd00200   129 TTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK-CVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLS 207
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 320543361  159 GQR----YWSSmlnlESTITCGIWTPDDQQVYFGTTQGQVIVMDVH-GAMVSQVQLSNDvPITSMAWS 221
Cdd:cd00200   208 TGKclgtLRGH----ENGVNSVAFSPDGYLLASGSEDGTIRVWDLRtGECVQTLSGHTN-SVTSLAWS 270
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
75-196 2.55e-03

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 41.55  E-value: 2.55e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320543361   75 LRTNYNLRGHRSDVILVKWNEPYQKLASCDSSGIIFVWIKYEGRWSIELINDRNtPVTHFSWSHDGRMALICYQDGFVLV 154
Cdd:cd00200   167 GKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHEN-GVNSVAFSPDGYLLASGSEDGTIRV 245
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 320543361  155 GSVAGQRYWSSMLNLESTITCGIWTPDDQQVYFGTTQGQVIV 196
Cdd:cd00200   246 WDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRI 287
WD40 COG2319
WD40 repeat [General function prediction only];
81-201 5.20e-03

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 41.05  E-value: 5.20e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320543361   81 LRGHRSDVILVKWNEPYQKLASCDSSGIIFVWiKYEGRWSIELINDRNTPVTHFSWSHDGRMALICYQDGFVLVGSVAGQ 160
Cdd:COG2319   284 LTGHSGGVNSVAFSPDGKLLASGSDDGTVRLW-DLATGKLLRTLTGHTGAVRSVAFSPDGKTLASGSDDGTVRLWDLATG 362
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 320543361  161 RYWSSMLNLESTITCGIWTPDDQQVYFGTTQGQVIVMDVHG 201
Cdd:COG2319   363 ELLRTLTGHTGAVTSVAFSPDGRTLASGSADGTVRLWDLAT 403
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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