|
Name |
Accession |
Description |
Interval |
E-value |
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
34-853 |
7.77e-56 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 209.26 E-value: 7.77e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 34 LSSLSRLEDKIRLLQDDLEVERELRQRIEREKADLSVQVIQMSERLEEAEGGAEHQFEANRKRDAELLKLRKLLEDVHLE 113
Cdd:pfam01576 263 LKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEALKTELEDTLDTTAAQQELRSKREQEVTELKKALEEETRS 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 114 SEETTLLLKKKHNEIITDFQEQVEILTKNKARAEKDKAKFQTEVYELLSQIESYNKEKIVSEKHISKLEVSISELNVKIE 193
Cdd:pfam01576 343 HEAQLQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLS 422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 194 ELNRTVIDISSHRSRLSQENIELTKDVQDLKVQLDTVSFSKSQVISQLEDARRRLEDEDRRRSLLESSLHQVEIELDSVR 273
Cdd:pfam01576 423 ESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQ 502
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 274 NQLEEESEARIDLERQLVKANADATSWQNKWNsEVAARAEEVEEIRRKYQVRITELEEHIESLIVKVNNLEKMKTRLASE 353
Cdd:pfam01576 503 EQLEEEEEAKRNVERQLSTLQAQLSDMKKKLE-EDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQE 581
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 354 VEVLIIDLEKSNNSCRELTKSVNTLEKHNVELKSRLDETIILYETSQRDLKNKHADLVRTVHELDKVKDNNNQLTRENKK 433
Cdd:pfam01576 582 LDDLLVDLDHQRQLVSNLEKKQKKFDQMLAEEKAISARYAEERDRAEAEAREKETRALSLARALEEALEAKEELERTNKQ 661
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 434 LGDDLHEAKGAINELNRRLHELELELRRLENERDELTAAYKEAEAGRKAEEQRGQRLAADFNQYRHDAERRLAEKDEEIE 513
Cdd:pfam01576 662 LRAEMEDLVSSKDDVGKNVHELERSKRALEQQVEEMKTQLEELEDELQATEDAKLRLEVNMQALKAQFERDLQARDEQGE 741
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 514 AIRKQTSIEIEQLNARvIEAETRLKTEVTRIKKKLQIQITELEMSLDVANKTNIDLQKVIKKQSLQLTELQAHYEDVQRQ 593
Cdd:pfam01576 742 EKRRQLVKQVRELEAE-LEDERKQRAQAVAAKKKLELDLKELEAQIDAANKGREEAVKQLKKLQAQMKDLQRELEEARAS 820
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 594 LQATLDQYAVAQRRLAGLNGELEEVRSHLDSANRAKRTVELQYEEAASRINELTTANVSLVSIKSKLEQELSVVASDYEE 673
Cdd:pfam01576 821 RDEILAQSKESEKKLKNLEAELLQLQEDLAASERARRQAQQERDELADEIASGASGKSALQDEKRRLEARIAQLEEELEE 900
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 674 VSKELRISDERYQKVQVELKHVVEQVHEEQERIVKLETIKKSLEVEVKNLSIRLEEVELNAVAGSKRIISKLEARIRDLE 753
Cdd:pfam01576 901 EQSNTELLNDRLRKSTLQVEQLTTELAAERSTSQKSESARQQLERQNKELKAKLQEMEGTVKSKFKSSIAALEAKIAQLE 980
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 754 LELEEEKRRHAETIKILRKKERTVKEVLVQCEEDQKNLILLQDALDKSTAKINIYRRQLSEQEGVSQQTTTRVRRFQREL 833
Cdd:pfam01576 981 EQLEQESRERQAANKLVRRTEKKLKEVLLQVEDERRHADQYKDQAEKGNSRMKQLKRQLEEAEEEASRANAARRKLQREL 1060
|
810 820
....*....|....*....|
gi 24661116 834 EAAEDRADTAESSLNIIRAK 853
Cdd:pfam01576 1061 DDATESNESMNREVSTLKSK 1080
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
153-848 |
4.98e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 83.18 E-value: 4.98e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 153 FQTEVYELLSQIESYNKEKIVSEKHISKLEVSISELNVKIEELNRTVIDIsshrsrlSQENIELTKDVQDLKVQLDTVSF 232
Cdd:TIGR02168 237 LREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEEL-------QKELYALANEISRLEQQKQILRE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 233 SKSQVISQLEDARRRLEDEDRRRSLLESSLHQVEIELDSVRNQLEEESEARIDLERQLVKANADATSWQNKWNSEVAARA 312
Cdd:TIGR02168 310 RLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVA 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 313 EEVEEIrRKYQVRITELEEHIESLIVKVNNLEKMKTRLASEVEVLiiDLEKSNNSCRELTKSVNTLEKHN---VELKSRL 389
Cdd:TIGR02168 390 QLELQI-ASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEA--ELKELQAELEELEEELEELQEELerlEEALEEL 466
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 390 DETIILYETSQRDLKNKHADLVRTVHELDKVKDNNNQLTRENKKLGDDLHEAKGAINELNRRLHELELELRRLENE---- 465
Cdd:TIGR02168 467 REELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAAlggr 546
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 466 -----RDELTAAYKEAEAGRKAEEQRGQRLAADFNQYRHDAERRLAEKDE---------EIEAIRKQTSIEIEQLNARVI 531
Cdd:TIGR02168 547 lqavvVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNiegflgvakDLVKFDPKLRKALSYLLGGVL 626
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 532 EAETrlKTEVTRIKKKLQIQITELEMSLDVANKTNIDLQKVIKKQSLQLT------ELQAHYEDVQRQLQATLDQYAVAQ 605
Cdd:TIGR02168 627 VVDD--LDNALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILErrreieELEEKIEELEEKIAELEKALAELR 704
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 606 RRLAGLNGELEEVRSHLDSANRAKRTVELQYEEAASRINELTTANVSLVSIKSKLEQELSVVASDYEEVSKELRISDERY 685
Cdd:TIGR02168 705 KELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEI 784
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 686 QKVQVELKHVVEQVHEEQERIVKLETIKKSLEVEVKNLSIRLEEVELNAVAGSKRiISKLEARIRDLELELEEEKRRHAE 765
Cdd:TIGR02168 785 EELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERR-LEDLEEQIEELSEDIESLAAEIEE 863
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 766 TIKILRKKERTVKEVLVQCEEDQKNLILLQDALDKSTAKINIYRRQLSEQEGVSQQTTTRVRRFQRELEAAEDRADTAES 845
Cdd:TIGR02168 864 LEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQE 943
|
...
gi 24661116 846 SLN 848
Cdd:TIGR02168 944 RLS 946
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
135-645 |
1.10e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 65.73 E-value: 1.10e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 135 QVEILTKNKARAEKDKAKFQTEVYELLSQIESYNKEKIVSEKHISKLEVSISELNVKIEELNRTVIDISSHRSRLSQENI 214
Cdd:COG1196 226 EAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 215 ELTKDVQDLKVQLDTVSFSKSQVISQLEDARRRLEDEDRRRSLLESSLHQVEIELDSVRNQLEEESEARIDLERQLVKAN 294
Cdd:COG1196 306 RLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELA 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 295 ADATSWQNKwNSEVAARAEEVEEIRRKYQVRITELEEHIESLIVKVNNLEKMKTRLASEVEVLIIDLEKSNNSCRELTKS 374
Cdd:COG1196 386 EELLEALRA-AAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLEL 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 375 VNTLEKHNVELKSRLDETIILYETSQRDLKNKHADLVRTVHELDKVKdnNNQLTRENKKLGDDLHEAKGAINELNRRLHE 454
Cdd:COG1196 465 LAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVK--AALLLAGLRGLAGAVAVLIGVEAAYEAALEA 542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 455 LELELRRLENERDELTAA-----YKEAEAGRKA-----EEQRGQRLAADFNQYRHDAERRLAEKDEEIEAIRKQTSIEIE 524
Cdd:COG1196 543 ALAAALQNIVVEDDEVAAaaieyLKAAKAGRATflpldKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTL 622
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 525 QLNARVIEAETRLKTEVTRIKKKLQIQITELEMSLDVANKTNIDLQKVIKKQSLQLTELQAHYEDVQRQLQATLDQYAVA 604
Cdd:COG1196 623 LGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAE 702
|
490 500 510 520
....*....|....*....|....*....|....*....|.
gi 24661116 605 QRRLAGLNGELEEVRSHLDSANRAKRTVELQYEEAASRINE 645
Cdd:COG1196 703 EEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLE 743
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
309-844 |
4.03e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.80 E-value: 4.03e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 309 AARAEEVEEIRRKYQVRiteleeHIESLIVKVNNLEKMKTRLASEVEVLIIDLEksnnscrELTKSVNTLEKHNVELKSR 388
Cdd:COG1196 209 AEKAERYRELKEELKEL------EAELLLLKLRELEAELEELEAELEELEAELE-------ELEAELAELEAELEELRLE 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 389 LDETIILYETSQRDLKNKHADLVRTVHELDKVKDNNNQLTRENKKLGDDLHEAKGAINELNRRLHELELELRRLENERDE 468
Cdd:COG1196 276 LEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEE 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 469 LTAAYKEAEAGRKAEEQR---GQRLAADFNQYRHDAERRLAEKDEEIEAIRKQTSIEIEQLNARVIEAETRLKTEVTRIK 545
Cdd:COG1196 356 AEAELAEAEEALLEAEAElaeAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEE 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 546 KKLQIQITELEMSLDVANK--TNIDLQKVIKKQSLQLTELQAHYEDVQRQLQATLDQYAVAQRRLAGLNGELEEVRSHLD 623
Cdd:COG1196 436 EEEEEEEALEEAAEEEAELeeEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALL 515
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 624 SANRAK--------RTVELQYEEA------ASRINELTTANVSLVSIKSKLEQELSVVASDYEEVSKELRISDERYQKVQ 689
Cdd:COG1196 516 LAGLRGlagavavlIGVEAAYEAAleaalaAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARG 595
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 690 VELKHVVEQVHEEQERIVKLETIKKSLEVEV-KNLSIRLEEVELNAVAGSKRIISKLEARIRDLELELEEEKRRHAETIK 768
Cdd:COG1196 596 AIGAAVDLVASDLREADARYYVLGDTLLGRTlVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALL 675
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 24661116 769 ILRKKERTVKEVLVQCEEDQKNLILLQDALDKSTAKINIYRRQLSEQEGVSQQTTTRVRRFQRELEAAEDRADTAE 844
Cdd:COG1196 676 EAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEE 751
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
128-844 |
4.61e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 60.47 E-value: 4.61e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 128 IITDFQEQVEILTKNKARAEKDKA----KFQTEVYELLSQIESYNKEKIVSEKHISKLEVSISELNVKIEELNRTVIDIs 203
Cdd:TIGR02169 192 IIDEKRQQLERLRREREKAERYQAllkeKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEI- 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 204 shRSRLSQENIELTKDVQDLKVQLDTVSFSKSQVISQLEDARRRLEDEDRRrslLESSLHQVEIELDSVRNQLEEesear 283
Cdd:TIGR02169 271 --EQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELED---AEERLAKLEAEIDKLLAEIEE----- 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 284 idLERQLVKANADATSWQNkwnsEVAARAEEVEEIRRkyqvRITELEEHIESLIVKVNNLEKMKTRLASEVEVLIIDLEK 363
Cdd:TIGR02169 341 --LEREIEEERKRRDKLTE----EYAELKEELEDLRA----ELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDR 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 364 SNNSCRELTKSVNTLEKHNVELKSRLDETIILYETSQRDLKNKHADLVRTVHELDKVKDNNNQLTRENKKLGDDLHEAKG 443
Cdd:TIGR02169 411 LQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQR 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 444 AINELNRRLHELELELRRLENERDELTAA-------------YKEAEAGrKAEEQRGQRLAADFNQYRHDAER------- 503
Cdd:TIGR02169 491 ELAEAEAQARASEERVRGGRAVEEVLKASiqgvhgtvaqlgsVGERYAT-AIEVAAGNRLNNVVVEDDAVAKEaiellkr 569
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 504 ------------RLAEKDEEIEAIRKQTS-------IEIEQLNARVIEAETRLKTEVTRIK--KKLQIQITELEMSLDVA 562
Cdd:TIGR02169 570 rkagratflplnKMRDERRDLSILSEDGVigfavdlVEFDPKYEPAFKYVFGDTLVVEDIEaaRRLMGKYRMVTLEGELF 649
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 563 NKTNIDLQKVIKKQSLQL--TELQAHYEDVQRQLQATLDQYAVAQRRLAGLNGELEEVRSHLDSANRAKRTVELQYEEAA 640
Cdd:TIGR02169 650 EKSGAMTGGSRAPRGGILfsRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLE 729
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 641 SRINELTTANVSLVSIKSKLEQELSVVASDYEEVSKelRISDERYQKVQVELKHVVEQVHEEQERIVKLETIKKSLEVEV 720
Cdd:TIGR02169 730 QEEEKLKERLEELEEDLSSLEQEIENVKSELKELEA--RIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEV 807
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 721 KNLSIRLEEVE--LNAVAGSKRIISK----LEARIRDLELELEEEKRRHAETIKILRKKERTVKEVLVQCEEDQKNLILL 794
Cdd:TIGR02169 808 SRIEARLREIEqkLNRLTLEKEYLEKeiqeLQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDL 887
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|
gi 24661116 795 QDALDKSTAKINIYRRQLSEQEGVSQQTTTRVRRFQRELEAAEDRADTAE 844
Cdd:TIGR02169 888 KKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIE 937
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
37-646 |
5.21e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.07 E-value: 5.21e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 37 LSRLEDKIRLLQDDLEVERELRQRIEREKADLSVQVIQMSERLEEAEG----------GAEHQFEANRKRDAELLKLRKL 106
Cdd:TIGR02168 241 LEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKelyalaneisRLEQQKQILRERLANLERQLEE 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 107 LEDVHLESEETTLLLKKKHNEIitdfQEQVEILTKNKARAEKDKAKFQTEVYELLSQIESYNKEKIVSEKHISKLEVSIS 186
Cdd:TIGR02168 321 LEAQLEELESKLDELAEELAEL----EEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIA 396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 187 ELNVKIEELNRTVIDISSHRSRLSQENIELTKDVQDLkvQLDTVSFSKSQVISQLEDARRRLEDEDRRRSLLESSLHQVE 266
Cdd:TIGR02168 397 SLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEA--ELKELQAELEELEEELEELQEELERLEEALEELREELEEAE 474
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 267 IELDSVRNQLEEESeARID-----LERQLVKANADATSWQNKWN-SEVAARAEEVEEIRRKYQVRI-TELEEHIESLIVK 339
Cdd:TIGR02168 475 QALDAAERELAQLQ-ARLDslerlQENLEGFSEGVKALLKNQSGlSGILGVLSELISVDEGYEAAIeAALGGRLQAVVVE 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 340 --------VNNLEKMKTRLASEVEVLIIDLEKSNNSCRELTKSV-------NTLEKHNVELK----SRLDETIIL--YET 398
Cdd:TIGR02168 554 nlnaakkaIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIegflgvaKDLVKFDPKLRkalsYLLGGVLVVddLDN 633
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 399 SQRDLKNKHADLVRTVHELDKV-----------KDNNNQLTREN---------KKLGDDLHEAKGAINELNRRLHELELE 458
Cdd:TIGR02168 634 ALELAKKLRPGYRIVTLDGDLVrpggvitggsaKTNSSILERRReieeleekiEELEEKIAELEKALAELRKELEELEEE 713
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 459 LRRLENERDELTAAYKEAEAGRKAEEQRGQRLAADFNQYRHDAER------RLAEKDEEIEAIRKQTSIEIEQLNARVIE 532
Cdd:TIGR02168 714 LEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTEleaeieELEERLEEAEEELAEAEAEIEELEAQIEQ 793
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 533 AETRLKTEVTRIKKK--------------------LQIQITELEMSLDVANKTNIDLQKVIKKQSLQLTELQAHYEDVQR 592
Cdd:TIGR02168 794 LKEELKALREALDELraeltllneeaanlrerlesLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELES 873
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 24661116 593 QLQATLDQYAVAQRRLAGLN---------------------GELEEVRSHLDSANRAKRTVELQYEEAASRINEL 646
Cdd:TIGR02168 874 ELEALLNERASLEEALALLRseleelseelreleskrselrRELEELREKLAQLELRLEGLEVRIDNLQERLSEE 948
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
37-549 |
9.29e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.10 E-value: 9.29e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 37 LSRLEDKIRLLQDDLEVERELRQRIEREKADLSVQVIQMSERLEEAEGGAEHQFEANRKRDAELLKLRKLLEDVHLESEE 116
Cdd:COG1196 290 EYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLE 369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 117 TTLLLKKKhneiitdfQEQVEILTKNKARAEKDKAKFQTEVYELLSQIESYNKEKIVSEKHISKLEVSISELNVKIEELN 196
Cdd:COG1196 370 AEAELAEA--------EEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEE 441
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 197 RTVIDISSHRSRLSQENIELTKDVQDLKVQLDtvsfsksQVISQLEDARRRLEDEDRRRSLLESSLHQVEIELDSVRNQL 276
Cdd:COG1196 442 EALEEAAEEEAELEEEEEALLELLAELLEEAA-------LLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAAL 514
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 277 EEESEARIDLERQLVKAnadatswqnkWNSEVAARAEEVEEIRRKYQVRITELEEHIESLIVKVNNLEKMKTRLASEVEV 356
Cdd:COG1196 515 LLAGLRGLAGAVAVLIG----------VEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRA 584
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 357 LIIDLEKSNNSCRELTKSVNTLEKHNVELKSRLDETIILYETS-QRDLKNKHADLVRTVHELDKVKDNNNQLTRENKKLG 435
Cdd:COG1196 585 RAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLvAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTG 664
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 436 DDLHEAKGAINELNRRLHELELELRRLENERDELTAAYKEAEAGRKAEEQRGQRLAADFNQYRHDAERRLAEKDEEIEAI 515
Cdd:COG1196 665 GSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEE 744
|
490 500 510
....*....|....*....|....*....|....
gi 24661116 516 RKQTSIEIEQLNARVIEAETrLKTEVTRIKKKLQ 549
Cdd:COG1196 745 EELLEEEALEELPEPPDLEE-LERELERLEREIE 777
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
492-868 |
1.12e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.76 E-value: 1.12e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 492 ADFNQYRHDAERRLAEKDEEIEAIRKQTSIEIEQLNARVIEAETRLKTEvtrikkklqiqitelemsldvanktniDLQK 571
Cdd:TIGR02169 166 AEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQ---------------------------ALLK 218
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 572 viKKQSLQLTELQAHYEDVQRQLQATLDQYAVAQRRLAGLNGELEEVRSHLDSANRAKRTVELQYEEAAS-RINELTTAN 650
Cdd:TIGR02169 219 --EKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEeEQLRVKEKI 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 651 VSLVSIKSKLEQELSVVASDYEEVSKELRISDERYQKVQVELKHVVEQVHEEQERIVKLETIKKSLEVEVKNLSIRLEEV 730
Cdd:TIGR02169 297 GELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEV 376
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 731 ELNAvAGSKRIISKLEARIRDLELELEEEKR---RHAETIKILRKKERTVKEVLVQCEEDQKNLI----LLQDALDKSTA 803
Cdd:TIGR02169 377 DKEF-AETRDELKDYREKLEKLKREINELKReldRLQEELQRLSEELADLNAAIAGIEAKINELEeekeDKALEIKKQEW 455
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 24661116 804 KINIYRRQLSEQEGVSQQTTTRVRRFQRELEAAEDRADTAESSLNIIRAKHRTFVTTSTVPGSQV 868
Cdd:TIGR02169 456 KLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASI 520
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
467-731 |
2.25e-06 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 51.88 E-value: 2.25e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 467 DELTAAYKEAEAGRkaeeQRGQRLAADFNQY--RHDAERRLAEKDEEIEAIRKQTSiEIEQLNARVIEAETRLKTEVTRI 544
Cdd:COG3096 795 DELAEQYAKASFDV----QKLQRLHQAFSQFvgGHLAVAFAPDPEAELAALRQRRS-ELERELAQHRAQEQQLRQQLDQL 869
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 545 KKKLQI------------------QITELEMSLDVANKTNIDLQK-------------VIKKQSLQLTELQAHYEDVQrQ 593
Cdd:COG3096 870 KEQLQLlnkllpqanlladetladRLEELREELDAAQEAQAFIQQhgkalaqleplvaVLQSDPEQFEQLQADYLQAK-E 948
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 594 LQATLDQYA-----VAQRR----------LAGLNGEL-EEVRSHLDSANRAKRTVELQYEEAASRINElttANVSLVSIK 657
Cdd:COG3096 949 QQRRLKQQIfalseVVQRRphfsyedavgLLGENSDLnEKLRARLEQAEEARREAREQLRQAQAQYSQ---YNQVLASLK 1025
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 24661116 658 SKLEQELSVVASDYEEVSK-ELRISDERYQKVQVELKHVVEQVHEEQERIVKLETIKKSLEVEVKNLSIRLEEVE 731
Cdd:COG3096 1026 SSRDAKQQTLQELEQELEElGVQADAEAEERARIRRDELHEELSQNRSRRSQLEKQLTRCEAEMDSLQKRLRKAE 1100
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
52-731 |
3.12e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.22 E-value: 3.12e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 52 EVERELrQRIEREKADLSVQVIQMSERLEEAEGG-AEHQFEANRKRDAELLKLRKLLEDVHLESEETtlllkkkhNEIIT 130
Cdd:TIGR02169 241 AIERQL-ASLEEELEKLTEEISELEKRLEEIEQLlEELNKKIKDLGEEEQLRVKEKIGELEAEIASL--------ERSIA 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 131 DFQEQVEILTKNKARAEKDKAKFQTEVYELLSQIESYNKEKIVSEKHISKLE---------------------VSISELN 189
Cdd:TIGR02169 312 EKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKeeledlraeleevdkefaetrDELKDYR 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 190 VKIEELNRTVIDISSHRSRLSQENIELTKDVQDLKVQLDTVSFSKSQVISQLEDARRRLEDEDRRRSLLESSLHQVEIEL 269
Cdd:TIGR02169 392 EKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQEL 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 270 DSVRNQLEEESEARIDLERQLVKANADATSWQNKWNSEVAARaeeveeirrkyqvriTELEEHIESLIVKVNNLEKMKTR 349
Cdd:TIGR02169 472 YDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVE---------------EVLKASIQGVHGTVAQLGSVGER 536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 350 LASEVEV--------LIIDLEKSNNSCRELTKSV----------NTLEKHNVELKSRLDETIILYETSQRDLKNKHADLV 411
Cdd:TIGR02169 537 YATAIEVaagnrlnnVVVEDDAVAKEAIELLKRRkagratflplNKMRDERRDLSILSEDGVIGFAVDLVEFDPKYEPAF 616
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 412 RTVHElDKVKDNNNQLTRENK------KLGDDLHEAKGAINELNRRLHELELELRRLENERDELTAAYKEAEAGR---KA 482
Cdd:TIGR02169 617 KYVFG-DTLVVEDIEAARRLMgkyrmvTLEGELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELsslQS 695
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 483 EEQRGQRLAADFNQYRHDAERRLAEKDEEIEAIRKqtsiEIEQLNARVIEAETRLktevtrikKKLQIQITELEMSLDVA 562
Cdd:TIGR02169 696 ELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQ----EEEKLKERLEELEEDL--------SSLEQEIENVKSELKEL 763
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 563 NKTNIDLQKVIKKQSLQLTELQAHY-----EDVQRQLQATLDQYAVAQRRLAGLNGELEEVRSHLDSANRAKRTVELQYE 637
Cdd:TIGR02169 764 EARIEELEEDLHKLEEALNDLEARLshsriPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRI 843
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 638 EAASRINELTTANVSLVSIKSKLEQELsvvasdyEEVSKELRISDERYQKVQVELKHVVEQVHEEQERIVKLETIKKSLE 717
Cdd:TIGR02169 844 DLKEQIKSIEKEIENLNGKKEELEEEL-------EELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKR 916
|
730
....*....|....
gi 24661116 718 VEVKNLSIRLEEVE 731
Cdd:TIGR02169 917 KRLSELKAKLEALE 930
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
47-617 |
3.40e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.09 E-value: 3.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 47 LQDDLEvERELRQRIeREKADLSVQVIQMSERLEEAEGGAEHQFEANRKRDAELLKLRKLLEDVHLESEETTLLLKKKHN 126
Cdd:COG1196 218 LKEELK-ELEAELLL-LKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 127 EIITdFQEQVEILTKNKARAEKDKAKFQTEVYELLSQIESYNKEKIVSEKHISKLEVSISELNVKIEELNRTVIDISSHR 206
Cdd:COG1196 296 ELAR-LEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAEL 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 207 SRLSQENIELTKDVQDLKVQLDTVSFSKSQVISQLEDARRRLEDEDRRRSLLESSLHQVEIELDSVRNQLEEESEARIDL 286
Cdd:COG1196 375 AEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAEL 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 287 ERQLVKAN---ADATSWQNKWNSEVAARAEEVEEIRRKYQVRITELEEH-IESLIVKVNNLEKMKTRLASEVEVLIIDLE 362
Cdd:COG1196 455 EEEEEALLellAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYeGFLEGVKAALLLAGLRGLAGAVAVLIGVEA 534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 363 KSNnscRELTKSVNTLEKHNVELKSRLDETIILYETSQRDLKnkhadlvRTVHELDKVKDNNNQLTRENKKLGDDLHEAK 442
Cdd:COG1196 535 AYE---AALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGR-------ATFLPLDKIRARAALAAALARGAIGAAVDLV 604
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 443 GAINELNRRLHELELELRRLENERDELTAAYKEAEAGRKAEEQRGQRLAADFNQYRHDAERRLAEKDEEIEAIRKQTSIE 522
Cdd:COG1196 605 ASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEEL 684
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 523 IEQLNARVIEAETRLKTEVTRIKKKLQIQITELEMSLDVANKTNIDLQKVIKKQSLQLTELQAHYEDVQRQLQATLDqYA 602
Cdd:COG1196 685 AERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPD-LE 763
|
570
....*....|....*
gi 24661116 603 VAQRRLAGLNGELEE 617
Cdd:COG1196 764 ELERELERLEREIEA 778
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
310-847 |
5.62e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 50.06 E-value: 5.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 310 ARAEEVEEirrkyqvRITELEEHIESLIVKVNNLEKMKTRLASEVEVL---IIDLEKSNNSCRELTKSVNTLEKHNVELK 386
Cdd:PRK03918 186 KRTENIEE-------LIKEKEKELEEVLREINEISSELPELREELEKLekeVKELEELKEEIEELEKELESLEGSKRKLE 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 387 SRLDETiilyETSQRDLKNKHADLVRTVHELDKVKdnnnQLTRENKKLGDDLHEAKGAINELNRRLHELELELRRLENER 466
Cdd:PRK03918 259 EKIREL----EERIEELKKEIEELEEKVKELKELK----EKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERI 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 467 DELTAAYKEAEAGRKAEEQRGQRLAAdfNQYRHDAERRLAEKDEEIEAIRKQTSI-EIEQLNARVIEAETRlKTEVTRIK 545
Cdd:PRK03918 331 KELEEKEERLEELKKKLKELEKRLEE--LEERHELYEEAKAKKEELERLKKRLTGlTPEKLEKELEELEKA-KEEIEEEI 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 546 KKLQIQITELEMSLDVANKTNIDLQKVIKKQSLQLTELQAHYEdvqrqlqatLDQYAVAQRRLAGLNGELEEVRSHLDSA 625
Cdd:PRK03918 408 SKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHR---------KELLEEYTAELKRIEKELKEIEEKERKL 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 626 NRAKRTVELQYEEAASRINELTTANvSLVSIKSKLEqelSVVASDYEEVSKELRISDERYQKVQVELKHVVEQVHEEQER 705
Cdd:PRK03918 479 RKELRELEKVLKKESELIKLKELAE-QLKELEEKLK---KYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEEL 554
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 706 IVKLETI---KKSLEVEVKNLSIRLEEVELNAVAGSKRIISKLEARIRDLELELEEEKRrhaetikiLRKKERTVKEVLV 782
Cdd:PRK03918 555 KKKLAELekkLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKE--------LEREEKELKKLEE 626
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 783 QCEEDQKNLILLQDALDKSTAKINIYRRQLSEQE--GVSQQTTTRVRRFQR---ELEAAEDRADTAESSL 847
Cdd:PRK03918 627 ELDKAFEELAETEKRLEELRKELEELEKKYSEEEyeELREEYLELSRELAGlraELEELEKRREEIKKTL 696
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
313-662 |
1.03e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 49.28 E-value: 1.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 313 EEVEEIRRKYQVRITELEEHIESLIVKVNNLEKMKTRLASEVEVLIIDLEKSNNSCRELTKSVNTLEKHNVELKSRLDET 392
Cdd:TIGR02168 680 EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTEL 759
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 393 IILYETSQRDLKNKHADLVRTVHELDKVKDNNNQLTRENKKLGDDLHEAKGAINELNRRLHELELELRRLENERDELTAA 472
Cdd:TIGR02168 760 EAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERR 839
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 473 YKEAEAGRKAEEQRGQRLAADFNQYRhDAERRLAEKDEEIEAIRKQTSIEIEQLNARVIEAETRLKT---EVTRIKKKLQ 549
Cdd:TIGR02168 840 LEDLEEQIEELSEDIESLAAEIEELE-ELIEELESELEALLNERASLEEALALLRSELEELSEELRElesKRSELRRELE 918
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 550 IQITELEMSLDVANKTNIDLQKVIKKQSlqlTELQAHYEDVQRQLQATLDQYAVAQRRLAGLNGELEEV-RSHLDSANra 628
Cdd:TIGR02168 919 ELREKLAQLELRLEGLEVRIDNLQERLS---EEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELgPVNLAAIE-- 993
|
330 340 350
....*....|....*....|....*....|....
gi 24661116 629 krtvelQYEEAASRINELTTANVSLVSIKSKLEQ 662
Cdd:TIGR02168 994 ------EYEELKERYDFLTAQKEDLTEAKETLEE 1021
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
399-634 |
1.18e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.61 E-value: 1.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 399 SQRDLKNKHADLVRTVHELDKVKDNNNQLTRENKKLGDDLHEAKGAINELNRRLHELELELRRLENERDELTAAYKEAEA 478
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 479 GRKAEEQR-GQRLAADFNQYRHDAERRLAEKDEEIEAIRKQTSIE-IEQLNARVIEAETRLKTEVTRIKKKLQIQITELE 556
Cdd:COG4942 98 ELEAQKEElAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKyLAPARREQAEELRADLAELAALRAELEAERAELE 177
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 24661116 557 MSLDVANKTNIDLQKVIKKQSLQLTELQAHYEDVQRQLQATLDQYAVAQRRLAGLNGELEEVRSHLDSANRAKRTVEL 634
Cdd:COG4942 178 ALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAALKGKL 255
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
39-352 |
1.54e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.90 E-value: 1.54e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 39 RLEDKIRLLQDDLEVERELRQRIEREKADLSVQVIQMSERLEEAEggAEHQFEANRKRDAELLKLRKLLEDVHLESEETT 118
Cdd:TIGR02168 688 ELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALR--KDLARLEAEVEQLEERIAQLSKELTELEAEIEE 765
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 119 LLlkkkhneiitdfqEQVEILTKNKARAEKDKAKFQTEVYELLSQIESYNKEKIVSEKHISKLEVSISELNVKIEELNRT 198
Cdd:TIGR02168 766 LE-------------ERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERR 832
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 199 VIDISSHRSRLSQENIELTKDVQDLKVQLDTVSFSKSQVISQLEDARRRLEDedrrrslLESSLHQVEIELDSVRNQLEE 278
Cdd:TIGR02168 833 IAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERAS-------LEEALALLRSELEELSEELRE 905
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 24661116 279 ESEARIDLERQLVKANADATSWQNKWNSEVAARAEEVEEIRRKYQVritELEEHIESLIVKVNNLEKMKTRLAS 352
Cdd:TIGR02168 906 LESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSL---TLEEAEALENKIEDDEEEARRRLKR 976
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
145-440 |
5.83e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.98 E-value: 5.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 145 RAEKDKAKFQTEVYELLSQIESYNKEKIVSEKHISKLEVSISELNVKIEELNRTVIDISSHRSRLSQENIELTKDVQDLK 224
Cdd:TIGR02169 664 GGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELE 743
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 225 VQLDTVSFSKSQVISQLEDarrrlededrrrslLESSLHQVEIELDSVRNQLEEeSEARIDLERqlVKANADATSWQNKW 304
Cdd:TIGR02169 744 EDLSSLEQEIENVKSELKE--------------LEARIEELEEDLHKLEEALND-LEARLSHSR--IPEIQAELSKLEEE 806
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 305 NSEVAARAEEVEEIRRKYQVRITELEEHIESLIVKVNNLEKMKTRLASEVEVLIIDLEKSNNSCRELTKSVNTLEKHNVE 384
Cdd:TIGR02169 807 VSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGD 886
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 24661116 385 LKSRLDETIILYETSQRDLKNKHADLVRTVHELDKVKDNNNQLTRENKKLGDDLHE 440
Cdd:TIGR02169 887 LKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGE 942
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
36-830 |
6.64e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 46.65 E-value: 6.64e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 36 SLSRLEDKIRLLQDDLEVERELRQRIEREKADLSVQVIQMSERLEEAEGGAEH-------QFEANRKRDAELLKLRKLLE 108
Cdd:pfam15921 111 SVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDmledsntQIEQLRKMMLSHEGVLQEIR 190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 109 DVHLESEETTLLLKKKHNEIIT-DFQEQVEILTKNKARAEKDKAKFQTEVYELLSQIE-----SYNKEKIVSEKHISKLE 182
Cdd:pfam15921 191 SILVDFEEASGKKIYEHDSMSTmHFRSLGSAISKILRELDTEISYLKGRIFPVEDQLEalkseSQNKIELLLQQHQDRIE 270
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 183 VSISELNVKIEELNRTVidiSSHRSRLS--QENIELTKDVQDLK-----VQLDTVSFSKSQVISQLEDARRRLEDEDRRr 255
Cdd:pfam15921 271 QLISEHEVEITGLTEKA---SSARSQANsiQSQLEIIQEQARNQnsmymRQLSDLESTVSQLRSELREAKRMYEDKIEE- 346
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 256 slLESSLHQVEIELDSVRNQLEEESEARIDLERQLVKANADA---------TSWQNK--WNSEVAaRAEEVEEIRRKYQV 324
Cdd:pfam15921 347 --LEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLhkrekelslEKEQNKrlWDRDTG-NSITIDHLRRELDD 423
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 325 RITELEEhIESLivkvnnLEKMKTRLASEVEVLIIDLEKSNNSCRELTKSVNTLEKHNVELKSRLDETI---ILYETSQR 401
Cdd:pfam15921 424 RNMEVQR-LEAL------LKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTakkMTLESSER 496
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 402 DLknkhADLVRTVHELDK-VKDNNNQLTRENKKLGDDLHEAKGAINElnrrlhelelelrrleneRDELTAAYKEAEAGR 480
Cdd:pfam15921 497 TV----SDLTASLQEKERaIEATNAEITKLRSRVDLKLQELQHLKNE------------------GDHLRNVQTECEALK 554
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 481 kaeeqrgqrlaadfnqyrhdaeRRLAEKDEEIEAIRKQtsieieqlnarvIEAETRLKTEVTRIKKKLQIQITELEMSLd 560
Cdd:pfam15921 555 ----------------------LQMAEKDKVIEILRQQ------------IENMTQLVGQHGRTAGAMQVEKAQLEKEI- 599
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 561 vaNKTNIDLQ--KVIK-KQSLQLTELQAHYEDVQ-----------RQLQATLDqyaVAQRRLAGLNgELEEVRSHLDSAN 626
Cdd:pfam15921 600 --NDRRLELQefKILKdKKDAKIRELEARVSDLElekvklvnagsERLRAVKD---IKQERDQLLN-EVKTSRNELNSLS 673
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 627 RA----KRTVELQYEEAASRINELttaNVSLVSIKSKLEQELSVVasdyeevsKELRISDERYQKVQVELKhvvEQVHEE 702
Cdd:pfam15921 674 EDyevlKRNFRNKSEEMETTTNKL---KMQLKSAQSELEQTRNTL--------KSMEGSDGHAMKVAMGMQ---KQITAK 739
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 703 QERIVKLETIKKSLEVEVKNLSirleevelnavaGSKRIISKLEARIRDLELELEEEKRRHAETIKILRKKERTVKEVLV 782
Cdd:pfam15921 740 RGQIDALQSKIQFLEEAMTNAN------------KEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVA 807
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|..
gi 24661116 783 QCEEdqknlillqdALDKSTAKI----NIYRRQLSEQEGVSQQTTTRVRRFQ 830
Cdd:pfam15921 808 NMEV----------ALDKASLQFaecqDIIQRQEQESVRLKLQHTLDVKELQ 849
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
154-639 |
1.23e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 45.80 E-value: 1.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 154 QTEVYELLSQIESYNKEKIVSEKHISKLEVSISELNVKIEELNRTVIDISSHRSRLSQ---ENIELTKDVQDLKVQLDTV 230
Cdd:PRK02224 212 ESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAEterEREELAEEVRDLRERLEEL 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 231 SFSKSQVISQLEDARRRLEDEDRRRSLLESSLHQVEIELDSVR-------NQLEEESEARIDLERQLVKANADAtswqnk 303
Cdd:PRK02224 292 EEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRvaaqahnEEAESLREDADDLEERAEELREEA------ 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 304 wnSEVAARAEEVEEIRRKYQVRITELEEHIESLIVKVNNLEKMKTRLASEVEVLIIDLEKSNNSCRELTKSVNTLEKHNV 383
Cdd:PRK02224 366 --AELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVE 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 384 ELKSRLDE-----------------TIILYETSQRDLKNKHADLVRTVHELDKVKDNNNQLTRENKKLgDDLHEAKGAIN 446
Cdd:PRK02224 444 EAEALLEAgkcpecgqpvegsphveTIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRI-ERLEERREDLE 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 447 ELNRRLHELELELRRLENERDElTAAYKEAEAGRKAEEQRGQRLAADFNQYRHDA-ERRLAEKDEEIEAIRKQTSI---- 521
Cdd:PRK02224 523 ELIAERRETIEEKRERAEELRE-RAAELEAEAEEKREAAAEAEEEAEEAREEVAElNSKLAELKERIESLERIRTLlaai 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 522 -----EIEQLNARvIEAETRLKTEVTRIKKKLQIQITELEMSLDVANktnidlqkvIKKQSLQLTELQAHYEDVQRQLQA 596
Cdd:PRK02224 602 adaedEIERLREK-REALAELNDERRERLAEKRERKRELEAEFDEAR---------IEEAREDKERAEEYLEQVEEKLDE 671
|
490 500 510 520
....*....|....*....|....*....|....*....|....*.
gi 24661116 597 TLDQYAVAQRRLAGLNGE---LEEVRSHLDSANRAKRTVELQYEEA 639
Cdd:PRK02224 672 LREERDDLQAEIGAVENEleeLEELRERREALENRVEALEALYDEA 717
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
500-705 |
1.29e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.68 E-value: 1.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 500 DAERRLAEKDEEIEAIRKqtsiEIEQLNARVIEAETRLKTevtrikkkLQIQITELEMSLDVANkTNIDLQKVIKkqslQ 579
Cdd:COG4913 607 DNRAKLAALEAELAELEE----ELAEAEERLEALEAELDA--------LQERREALQRLAEYSW-DEIDVASAER----E 669
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 580 LTELQAHYEdvqrQLQATLDQYAVAQRRLAGLNGELEEVRSHLDSANRAKRTVELQYEEAASRINELTTANVSLVSIKSK 659
Cdd:COG4913 670 IAELEAELE----RLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARL 745
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 24661116 660 LEQElsvvasDYEEVSKELRIsDERYQKVQVELKHVVEQVHEEQER 705
Cdd:COG4913 746 ELRA------LLEERFAAALG-DAVERELRENLEERIDALRARLNR 784
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
156-646 |
1.57e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.44 E-value: 1.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 156 EVYELLSQIESYNKEKIVSEKHISKLEVSISELNVKIEELNRTVIDISSHRSRLS--QENIELTKDVQDLKVQLDTVSFS 233
Cdd:PRK03918 232 ELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKelKEKAEEYIKLSEFYEEYLDELRE 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 234 KSQVISQLEDARRRLEDEDRRRSLLESSLHQVEIELDSVRNQLEEESEARIDLERQLVKANADATSWQNKWNSEVAARAE 313
Cdd:PRK03918 312 IEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEK 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 314 EVEEIRRkyqvRITELEEHIESLIVKVNNLEKMKTRLasevEVLIIDLEKSNNSC----RELTksvntlEKHNVELKSRL 389
Cdd:PRK03918 392 ELEELEK----AKEEIEEEISKITARIGELKKEIKEL----KKAIEELKKAKGKCpvcgRELT------EEHRKELLEEY 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 390 DETIILYETSQRDLKNKHADLVRTVHELDKVKDNNNQLTReNKKLGDDLHEAKGAINELNRRLHELELEL-RRLENERDE 468
Cdd:PRK03918 458 TAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIK-LKELAEQLKELEEKLKKYNLEELEKKAEEyEKLKEKLIK 536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 469 LTAAYKEAEAGRKAEEQRGQRLAAdFNQYRHDAERRLAEKDEEIEAIRKQTsieIEQLNARVIEAE---------TRLKT 539
Cdd:PRK03918 537 LKGEIKSLKKELEKLEELKKKLAE-LEKKLDELEEELAELLKELEELGFES---VEELEERLKELEpfyneylelKDAEK 612
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 540 EVTRIKKKLQIQITELEMSLDVANKTNIDLQKVIKkqslQLTELQAHYEDvqRQLQATLDQYAVAQRRLAGLNGELEEVR 619
Cdd:PRK03918 613 ELEREEKELKKLEEELDKAFEELAETEKRLEELRK----ELEELEKKYSE--EEYEELREEYLELSRELAGLRAELEELE 686
|
490 500
....*....|....*....|....*..
gi 24661116 620 SHLDSANRAKRTVELQYEEAASRINEL 646
Cdd:PRK03918 687 KRREEIKKTLEKLKEELEEREKAKKEL 713
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
241-532 |
2.62e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.05 E-value: 2.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 241 LEDARRRLEDEDRRRSLLESSLHQVEIELDSVRNQLEEESEARIDLERQLVKANADATSWQNKWNSEVAARA------EE 314
Cdd:TIGR02168 679 IEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAqlskelTE 758
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 315 VEEIRRKYQVRITELEEHIESLIVKVNNLEKMKTRLASEVEVLIIDLEKSNNSCRELTKSVNTLEKHNVELKSRLDETII 394
Cdd:TIGR02168 759 LEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATER 838
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 395 LYETSQRDLKNKHADLVRTVHELDKVKDNNNQLTRENKKLGD-------DLHEAKGAINELNRRLHELELELRRLENERD 467
Cdd:TIGR02168 839 RLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNerasleeALALLRSELEELSEELRELESKRSELRRELE 918
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 24661116 468 ELTAAYKEAEAGRKAEEQRGQRLAADFNQYRHDAERRLAEKDEEIEAIRKQTSIEIEQLNARVIE 532
Cdd:TIGR02168 919 ELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKE 983
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
306-789 |
4.03e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 44.36 E-value: 4.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 306 SEVAARAEEV---EEIRRKYQVRITELEEHIESliVKVNNLEKMKTRLASEVEVLIIDLEKSNNSCRELTKSVNTLEKHN 382
Cdd:PTZ00121 1196 AEDARKAEAArkaEEERKAEEARKAEDAKKAEA--VKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIK 1273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 383 VELKSRLDETIILYETSQRDlKNKHADLVRTVHELDKVKDNNNQLTRENKKLGDDLHEAKGAINELNRRLHELELELRRL 462
Cdd:PTZ00121 1274 AEEARKADELKKAEEKKKAD-EAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEA 1352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 463 ENERDELTAAYKEAEAGRKAEEQRGQRLaadfnqyrhDAERRLAEKDEEIEAIRKQTsiEIEQLNARVIEAETRLKTEVT 542
Cdd:PTZ00121 1353 EAAADEAEAAEEKAEAAEKKKEEAKKKA---------DAAKKKAEEKKKADEAKKKA--EEDKKKADELKKAAAAKKKAD 1421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 543 RIKKKLQIQITELEMSLDVANKTNIDLQKVIKKQSLQLTELQAHYEDVQRQLQATldQYAVAQRRLAGLNGELEEVRSHL 622
Cdd:PTZ00121 1422 EAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAK--KKAEEAKKADEAKKKAEEAKKKA 1499
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 623 DSANRA----KRTVELQYEEAASRINELTTANvslvsiksklEQELSVVASDYEEVSKELRISDERYQKVQVELKHVVEQ 698
Cdd:PTZ00121 1500 DEAKKAaeakKKADEAKKAEEAKKADEAKKAE----------EAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEA 1569
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 699 VHEEQERIVKLETIKKSLEVEVKNLSIRLEEVELNAVAGSKRIISKLEARIRDLELELEEEKRRHAETIKILRKKERTVK 778
Cdd:PTZ00121 1570 KKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKA 1649
|
490
....*....|.
gi 24661116 779 EVLVQCEEDQK 789
Cdd:PTZ00121 1650 EELKKAEEENK 1660
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
350-720 |
5.52e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.90 E-value: 5.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 350 LASEVEVLIIDLEKSNNSCRELTKSVNTLEKHNVELKSRLDETIILYETSQRDLKNKHADLVRTVHELDKVKDNNNQLTR 429
Cdd:TIGR02169 686 LKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEA 765
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 430 ENKKLGDDLHEAKGAINELnrrlhelelELRRLENERDELTAAYKEAEAGRKAEEQRGQRLAADFNQyRHDAERRLAEKD 509
Cdd:TIGR02169 766 RIEELEEDLHKLEEALNDL---------EARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNR-LTLEKEYLEKEI 835
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 510 EEIEAIRKQTSIEIEQLNARVIEAETRLKtEVTRIKKKLQIQITELEMSLdvanktnIDLQKVIKKQSLQLTELQAHYED 589
Cdd:TIGR02169 836 QELQEQRIDLKEQIKSIEKEIENLNGKKE-ELEEELEELEAALRDLESRL-------GDLKKERDELEAQLRELERKIEE 907
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 590 VQRQLQATLDQYAVAQRRLAGLNGELeevrSHLDSANRAKRTV---ELQYEEAASRINELTTANVSLVSIKSKLEQElsv 666
Cdd:TIGR02169 908 LEAQIEKKRKRLSELKAKLEALEEEL----SEIEDPKGEDEEIpeeELSLEDVQAELQRVEEEIRALEPVNMLAIQE--- 980
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 24661116 667 vasdYEEVSKELRISDERYQKVQVELKHVveqvheeQERIVKLETIKKSLEVEV 720
Cdd:TIGR02169 981 ----YEEVLKRLDELKEKRAKLEEERKAI-------LERIEEYEKKKREVFMEA 1023
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
533-738 |
6.27e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.21 E-value: 6.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 533 AETRLKTEVTRIKKKLQIQITELEMSLDVANKTNIDLQKVIKKQSLQLTELQAHYEDVQRQLQATLDQYAVAQRRLAGLN 612
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 613 GELEEVRSHL----------------------DSANRAKRTVE-LQY--EEAASRINELTTANVSLVSIKSKLEQELSVV 667
Cdd:COG4942 97 AELEAQKEELaellralyrlgrqpplalllspEDFLDAVRRLQyLKYlaPARREQAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 24661116 668 ASDYEEVSKELRISDERYQKVQVELKHVVEQVHEEQERIVKLETIKKSLEVEVKNLSIRLEEVELNAVAGS 738
Cdd:COG4942 177 EALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAG 247
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
26-791 |
7.08e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 43.42 E-value: 7.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 26 VNIEYIQDLSSLSRLEDKIRLLQDDLEVERELRQRIEREKADLSVQVIQmSERLEEAEGGAEHQFEANRKRDAELLKLRK 105
Cdd:pfam02463 234 LNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKK-LQEEELKLLAKEEEELKSELLKLERRKVDD 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 106 LLEDVHLESEETTLLLKKKHNEIITDFQEQVEILTKNKARAEKDKAKFQTEVYELLSQIESYNKEKIvsEKHISKLEVSI 185
Cdd:pfam02463 313 EEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKK--KLESERLSSAA 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 186 SELNVKIEELNRTVIDISSHRSRLSQENIELTKDVQDLKVQLDTVSFSKSQVISQLEDARRRLEDEDRRRSLLESSLHQV 265
Cdd:pfam02463 391 KLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKS 470
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 266 EIELDSVRNQLEEESEARIDLERQLVKANADATSWQNKWNSEVAARAEEVEEIRRKYQVRITELEEHIESLIVKVNNLEk 345
Cdd:pfam02463 471 EDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAV- 549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 346 mktrlASEVEVLIIDLEKSNNSCRELTKSVNTLEKHNVELKSRLDETIILYETSQRDLKNKHADLVRTVHELDKVKDNNN 425
Cdd:pfam02463 550 -----IVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKV 624
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 426 QLTRENKKLGDDLHEAKGAINELNRRLHELELELRRLENERDELTAAYKEAEAGR-----------KAEEQRGQRLAADF 494
Cdd:pfam02463 625 VEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQelqekaeselaKEEILRRQLEIKKK 704
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 495 NQYRHDAERRLAEKDEEIEAIRKQTSIEIEQLNARVIEA------ETRLKTEVTRIKKKLQIQITELEMSLDVANKTNID 568
Cdd:pfam02463 705 EQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQkideeeEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTE 784
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 569 LQKVIKKQSLQLTELQAHYEDVQRQLQATLDQYAVAQRRLAGLNGELEEVRSHLD------------SANRAKRTVELQY 636
Cdd:pfam02463 785 KLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELAlelkeeqkleklAEEELERLEEEIT 864
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 637 EEAASRINELTTANVSLVSIKSKLEQELSVVASDYEEVSKELRISDERYQKVQVELKHVVEQVHEEQERIVKLETIKKSL 716
Cdd:pfam02463 865 KEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEE 944
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 24661116 717 EVEVKNLSIRLEEVELNAVAGSKRIISKLEARIRDLELELEEEKRRHAETIKILRKKERTVKEVLVQCEEDQKNL 791
Cdd:pfam02463 945 ADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQRL 1019
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
159-449 |
1.09e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 42.70 E-value: 1.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 159 ELLSQIESYNKEKIVSEKHISKLEVSISELNVKIEELNRTVIDISSHRSRLSQENIELTKDVQDLKVQLDTVSFSKSQVI 238
Cdd:TIGR04523 311 ELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLE 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 239 SQLEDARRRLEDEDRRRSLLESSLHQVEIELDSVRNQLEEESEARIDLERQ---LVKANADATSWQNKWNSEVAARAEEV 315
Cdd:TIGR04523 391 SQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEikdLTNQDSVKELIIKNLDNTRESLETQL 470
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 316 EEIRRKYQVRITELEEHIESLIVKVNNLEKM---KTRLASEVEVLIIDLEKSNNSCRELTKSVNTLEKHNVELKSRLDE- 391
Cdd:TIGR04523 471 KVLSRSINKIKQNLEQKQKELKSKEKELKKLneeKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKd 550
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 24661116 392 ----TIILYETsQRDLKNKhadlvrtvhELDKVKDNNNQLTRENKKLGDDLHEAKGAINELN 449
Cdd:TIGR04523 551 dfelKKENLEK-EIDEKNK---------EIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLI 602
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
576-789 |
1.09e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.44 E-value: 1.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 576 QSLQLTELQAHYEDVQRQLQATLDQYAVAQRRLAGLNGELEEVRSHLDSANRAKRTVELQYEEAASRINELTTANVSLVS 655
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 656 IKSKLEQELSVV--------ASDYEEV---SKELRISDERYQKVQVELKHVVEQVHEEQERIVKLETIKKSLEVEVKNLS 724
Cdd:COG4942 98 ELEAQKEELAELlralyrlgRQPPLALllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELE 177
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 24661116 725 IRLEEVElnavaGSKRIISKLEARIRDLELELEEEKRRHAETIKILRKKERTVKEVLVQCEEDQK 789
Cdd:COG4942 178 ALLAELE-----EERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAA 237
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
127-722 |
1.84e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 41.93 E-value: 1.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 127 EIITDFQEQVEILTKNKARAEKDKAKFQTEVYELLSQIESYNKEKIVSEKHISKLEVSISELNVKIEELNRTVIDISSHR 206
Cdd:TIGR04523 68 EKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEI 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 207 SRLSQENIELTKDVQDLKVQLDTVSFSKSQVISQLEDARRRLEDEDRRRSLLE---SSLHQVEIELDSVRNQLEEESEAR 283
Cdd:TIGR04523 148 KKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLElllSNLKKKIQKNKSLESQISELKKQN 227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 284 IDLERQLVKANADATSWQNKWNS---EVAARAEEVEEIRRKYQVRITELEEHIESLIVKVNNLEKMKTrlasevEVLIID 360
Cdd:TIGR04523 228 NQLKDNIEKKQQEINEKTTEISNtqtQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKS------EISDLN 301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 361 LEKSNNSCRELTKSVNTLEKHNVELKSRLDETiilyETSQRDLKNKHADLVRTVheldkvkdnnNQLTRENKKLGDDLHE 440
Cdd:TIGR04523 302 NQKEQDWNKELKSELKNQEKKLEEIQNQISQN----NKIISQLNEQISQLKKEL----------TNSESENSEKQRELEE 367
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 441 AKGAINELNRRLHELELELRRLENERDELTAAYKEAEAGRKAEEQRGQRLAADFNqyrhdaerrlaEKDEEIEAIRKQTS 520
Cdd:TIGR04523 368 KQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKE-----------LLEKEIERLKETII 436
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 521 I---EIEQLNARVIEAETRLKtEVTRIKKKLQIQITELEMSLDVANKTNIDLQKVIKKQSLQLTELQAHYEDVQRQLQAT 597
Cdd:TIGR04523 437 KnnsEIKDLTNQDSVKELIIK-NLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDL 515
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 598 LDQYAVAQRRLAGLNGELEEVRSHLDSANR---------AKRTVELQYEEAASRINELTTANVSLVSIKSKLEQELSVVA 668
Cdd:TIGR04523 516 TKKISSLKEKIEKLESEKKEKESKISDLEDelnkddfelKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKE 595
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....
gi 24661116 669 SDYEEVSKELRISDERYQKVQVELKHVVEQVHEEQERIVKLETIKKSLEVEVKN 722
Cdd:TIGR04523 596 KEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQ 649
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
38-602 |
2.40e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 41.54 E-value: 2.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 38 SRLEDKIRLLQDDLEVERELRQRIEREKADLSVQVIQMSERLEEAEggaEHQFEANRKRDAELLKLRKLLEDVHLESEET 117
Cdd:TIGR04523 36 KQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILE---QQIKDLNDKLKKNKDKINKLNSDLSKINSEI 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 118 tlllkKKHNEIITDFQEQVEILTKNKARAEKDKAKFQTEVYELLSQIESYNKEKIVSEKHISKLEVSISELNVKIEELNR 197
Cdd:TIGR04523 113 -----KNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQK 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 198 TVIDISSHRSRL----------SQENIELTKDVQDLKVQLDTVSFSKSQVISQLEDARRRLEDEDRRRSLLESSLHQVEI 267
Cdd:TIGR04523 188 NIDKIKNKLLKLelllsnlkkkIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKK 267
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 268 ELDSVRNQLEEESEARIDLERQLVKANADATSWQNK----WNSEVAARAEEVEEIRRKYQVRITELEEHIESLIVKVNNL 343
Cdd:TIGR04523 268 QLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQkeqdWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQL 347
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 344 EKMKTRLASEvevliidlekSNNSCRELTKSVNTLEKHNVELKSRLDETIILyETSQRDLKNKhadlvrtvheLDKVKDN 423
Cdd:TIGR04523 348 KKELTNSESE----------NSEKQRELEEKQNEIEKLKKENQSYKQEIKNL-ESQINDLESK----------IQNQEKL 406
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 424 NNQLTRENKKLGDDLHEAKGAINELNRRLHELELELRRLENERDELTAAYKEAEAGRKAEEQRGQRLAADFNQYRHDAE- 502
Cdd:TIGR04523 407 NQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEq 486
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 503 --RRLAEKDEEIEAIRKQTS------IEIEQLNARVIEAETRLKTEVTRIKKKLQIQITELEMSLDVANKTNIDLQKVIK 574
Cdd:TIGR04523 487 kqKELKSKEKELKKLNEEKKeleekvKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLEKEIDEK 566
|
570 580
....*....|....*....|....*....
gi 24661116 575 KQSL-QLTELQAHYEDVQRQLQATLDQYA 602
Cdd:TIGR04523 567 NKEIeELKQTQKSLKKKQEEKQELIDQKE 595
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
424-719 |
2.81e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 41.26 E-value: 2.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 424 NNQLTRENKKLGDDLH--EAKGAINELNRRLHELELELRRLENERDELTaayKEAEAGRKAEEQRGQRLAADFNQ--YRH 499
Cdd:pfam17380 261 NGQTMTENEFLNQLLHivQHQKAVSERQQQEKFEKMEQERLRQEKEEKA---REVERRRKLEEAEKARQAEMDRQaaIYA 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 500 DAERRLAEKDEEIEAIRKQT-SIEIEQLNARVIEAETRLKTEVTRIKKKLQIQITELEMSLDVANKTNI---DLQKVIKK 575
Cdd:pfam17380 338 EQERMAMERERELERIRQEErKRELERIRQEEIAMEISRMRELERLQMERQQKNERVRQELEAARKVKIleeERQRKIQQ 417
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 576 QSLQLTELQAHYEDV-QRQLQATLDQYA--VAQRRLAGLNGELEEVRSHLDSANRAKRTVELQYEEAASRINELTTANVs 652
Cdd:pfam17380 418 QKVEMEQIRAEQEEArQREVRRLEEERAreMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKI- 496
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 24661116 653 lvsikskLEQELsvvasdyeEVSKELRISDERYQK-VQVELKHVVEQVHEEQERIVKLETIKKSLEVE 719
Cdd:pfam17380 497 -------LEKEL--------EERKQAMIEEERKRKlLEKEMEERQKAIYEEERRREAEEERRKQQEME 549
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
384-612 |
3.96e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.52 E-value: 3.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 384 ELKSRLDETIILYETSQRDLKNKHADLVRTVHELDKVKDNNNQLTRENKKLGDDLHEAKGAINELNRRLHELELELRRLE 463
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 464 NERDE-LTAAYKEAEAGRKA---------EEQRGQRLAADFNQYRHDAERRLAEKDEEIEAIRKQTSIEIEQLNArviea 533
Cdd:COG4942 104 EELAElLRALYRLGRQPPLAlllspedflDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEA----- 178
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 24661116 534 etrlktevtrIKKKLQIQITELEMSLDVANKTNIDLQKVIKKQSLQLTELQAHYEDVQRQLQATLDQYAVAQRRLAGLN 612
Cdd:COG4942 179 ----------LLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAG 247
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
259-693 |
5.40e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 40.48 E-value: 5.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 259 ESSLHQVEIELDSVRNQLEEESEARIDLERQLVKANADATSWQN--KWNSEVAARAEEVEEIRRKYQVRITELEEHIESL 336
Cdd:pfam05483 376 EDQLKIITMELQKKSSELEEMTKFKNNKEVELEELKKILAEDEKllDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDL 455
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 337 IVKVNNLEKMKTRLASEVEVLIIDLEKSNNSCRELTKSVNTLEKHNVELKSRLDETIILYETSQRDLKNKHADLVRTVHE 416
Cdd:pfam05483 456 EIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQ 535
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 417 LDKVKDNNNQLTrenkklgddlheakgaiNELNRRLHELELELRRLENERDELTAAYKEAEAGRKAEEQRGQRLAADFNQ 496
Cdd:pfam05483 536 IENLEEKEMNLR-----------------DELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNN 598
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 497 YRHDAERR---LAEKDEEIEAIRKQTSIEIEQLNARVIEAeTRLKTEVTRIKKKLQIQITELEmsldvankTNIDLQKVI 573
Cdd:pfam05483 599 LKKQIENKnknIEELHQENKALKKKGSAENKQLNAYEIKV-NKLELELASAKQKFEEIIDNYQ--------KEIEDKKIS 669
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 574 KKQSLQLTELQAHYEDVQRQLQATLDQYavAQRRLAGLNGELEEVRSHLDSAnrakrtvelqYEEAASRINELTTANVSL 653
Cdd:pfam05483 670 EEKLLEEVEKAKAIADEAVKLQKEIDKR--CQHKIAEMVALMEKHKHQYDKI----------IEERDSELGLYKNKEQEQ 737
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 24661116 654 VSIKSKLEQELSVVASDYEEVSKELRISDERYQKVQVELK 693
Cdd:pfam05483 738 SSAKAALEIELSNIKAELLSLKKQLEIEKEEKEKLKMEAK 777
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
579-751 |
6.70e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.28 E-value: 6.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 579 QLTELQAHYE---------DVQRQLQATLDQYAvAQRRLAGLNGELEEVRSHLDSANRAKRTVELQYEEAASRINELTTA 649
Cdd:COG4913 253 LLEPIRELAEryaaarerlAELEYLRAALRLWF-AQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQ 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 650 --NVSLVSIKSkLEQELSVVASDYEEVSKELRI--------------SDERYQKVQVELKHVVEQVHEEQERIVKLETik 713
Cdd:COG4913 332 irGNGGDRLEQ-LEREIERLERELEERERRRARleallaalglplpaSAEEFAALRAEAAALLEALEEELEALEEALA-- 408
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 24661116 714 kSLEVEVKNLSIRLEEV--ELNAVAGSKRIISKLEARIRD 751
Cdd:COG4913 409 -EAEAALRDLRRELRELeaEIASLERRKSNIPARLLALRD 447
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
39-278 |
8.21e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 40.04 E-value: 8.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 39 RLEDKIRLLQD---DLEVERELRQRIEREKADLSVQVIQMSERLEEAEGGAEHQFEANRKR-DAELLKLRKLLEDVH--- 111
Cdd:TIGR02168 744 QLEERIAQLSKeltELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREAlDELRAELTLLNEEAAnlr 823
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 112 --LESEETTLLLKKKHneiITDFQEQVEILTKNKARAEKDKAKFQTEVYELLSQIESYNKEKIVSEKHISKLEVSISELN 189
Cdd:TIGR02168 824 erLESLERRIAATERR---LEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELS 900
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 190 VKIEELNrtvidisSHRSRLSQENIELTKDVQDLKVQLDTVSFSKSQVISQL-EDARRRLEDEDRRRSLLESSLHQVEIE 268
Cdd:TIGR02168 901 EELRELE-------SKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLsEEYSLTLEEAEALENKIEDDEEEARRR 973
|
250
....*....|
gi 24661116 269 LDSVRNQLEE 278
Cdd:TIGR02168 974 LKRLENKIKE 983
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
461-620 |
9.02e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 39.90 E-value: 9.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 461 RLENERDELTAAYKEAEAGRKAEEQRGQRLAA----DFNQYRHD-AERRLAEKDEEIEAIRKqTSIEIEQLNARVIEAET 535
Cdd:COG4913 621 ELEEELAEAEERLEALEAELDALQERREALQRlaeySWDEIDVAsAEREIAELEAELERLDA-SSDDLAALEEQLEELEA 699
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 536 RLKT------EVTRIKKKLQIQITELEMSLDVANKTNIDLQKVIKKQSLQLTE-------LQAHYEDVQRQLQATLDQya 602
Cdd:COG4913 700 ELEEleeeldELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEerfaaalGDAVERELRENLEERIDA-- 777
|
170
....*....|....*...
gi 24661116 603 vAQRRLAGLNGELEEVRS 620
Cdd:COG4913 778 -LRARLNRAEEELERAMR 794
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
126-355 |
9.66e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 39.36 E-value: 9.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 126 NEIITDFQEQVEILTKNKARAEKDKAKFQTEVYELLSQIESYNKEKIVSEKHISKLEVSISELNVKIEELNRTVIDISSH 205
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 206 RSRLSQENIELTKDVQDLKVQLDTVSFSKSQVISQLEDARRRLEDEDRRRSLLESSLHQVEIELDSVRNQLEEESEARID 285
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEA 178
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24661116 286 LERQLVKAnadatswQNKWNSEVAARAEEVEEIRRkyqvRITELEEHIESLIVKVNNLEKMKTRLASEVE 355
Cdd:COG4942 179 LLAELEEE-------RAALEALKAERQKLLARLEK----ELAELAAELAELQQEAEELEALIARLEAEAA 237
|
|
| |
