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Conserved domains on  [gi|25057130|ref|NP_740232|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Polyodon spathula]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475913)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-348 0e+00

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 541.32  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130    1 MNPYVFAILLSSLGIGTTLTFASSHWLLAWMGLEINTLAIIPLMAQQHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130   81 TGEWNIQEMSNPTALTLITMALALKIGLAPIHYWLPEVLQGLDLTTGLILSTWQKLAPFALIYQISPMmNPTLMITLGLA 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130  161 STIVGGWGGLNQTQLRKILAYSSIAHLGWMMVIMQYSPSLAMLNLTLYIIMTTATFLTFKNVTSTKLNALALTWSKTPMM 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130  241 TTMAMMTLLSLGGLPPLTGFMPKWLILQELTKQNLPLTASIMAMAALLSLFFYLRMCYAMTLTISPNTNNNTSTWRQKSS 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319

                        330       340
                 ....*....|....*....|....*...
gi 25057130  321 QTTMTLSITTLLALTLLPTTPTIMALMT 348
Cdd:MTH00135 320 QLTLPLAISTTATLMLLPLTPAILALLT 347
 
Name Accession Description Interval E-value
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-348 0e+00

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 541.32  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130    1 MNPYVFAILLSSLGIGTTLTFASSHWLLAWMGLEINTLAIIPLMAQQHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130   81 TGEWNIQEMSNPTALTLITMALALKIGLAPIHYWLPEVLQGLDLTTGLILSTWQKLAPFALIYQISPMmNPTLMITLGLA 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130  161 STIVGGWGGLNQTQLRKILAYSSIAHLGWMMVIMQYSPSLAMLNLTLYIIMTTATFLTFKNVTSTKLNALALTWSKTPMM 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130  241 TTMAMMTLLSLGGLPPLTGFMPKWLILQELTKQNLPLTASIMAMAALLSLFFYLRMCYAMTLTISPNTNNNTSTWRQKSS 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319

                        330       340
                 ....*....|....*....|....*...
gi 25057130  321 QTTMTLSITTLLALTLLPTTPTIMALMT 348
Cdd:MTH00135 320 QLTLPLAISTTATLMLLPLTPAILALLT 347
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 8.24e-23

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 96.23  E-value: 8.24e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130    23 SSHWLLAWMGLEINTLAIIPLMA-QQHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGEWNIQEMSNPTALT----- 96
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGlnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130    97 ------LITMALALKIGLAPIHYWLPEVLQGLDLTTGLIL-STWQKLAPFALIYQISPMMNPT-----LMITLGLASTIV 164
Cdd:pfam00361  81 llllflLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIRRSLLYLPSSpfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130   165 GGWGGLNQTQLRKILAYSSIAHLGWMMVIM----QYSPSLAMLNLTLYIIMTTATFLTFKNVT-----STKLNALALTWS 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSVIyrrvhTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 25057130   236 KTPMMTTMAMMTLLSLGGLPPLTGFMPKWLILQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 6-300 2.31e-22

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 97.49  E-value: 2.31e-22
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130   6 FAILLSSLgIGTTLTFASSHWLLAWMGLEINTLAIIPLMA-QQHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGEW 84
Cdd:COG1007 105 YALLLFAT-LGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSL 183

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130  85 NIQEMSNP------------TALTLITMALALKIGLAPIHYWLPEVLQGLDLTTGLILSTWQKLAPFALIYQI------- 145
Cdd:COG1007 184 NLAGIAAAlaaggansplllLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLlveafpg 263

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130 146 -SPMMNPTLMItLGLASTIVGGWGGLNQTQLRKILAYSSIAHLGWMMVIM----QYSPSLAMLNLTLYIIMTTATF---- 216
Cdd:COG1007 264 lAADWQLLLAV-LAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLaagtPLGVSAALFYLLAYLFMNLGAFavil 342

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130 217 -LTFKNVTSTKLNALALTWSKTPMMTTMAMMTLLSLGGLPPLTGFMPKWLILQELTKQNLPLTASIMAMAALLSLFFYLR 295
Cdd:COG1007 343 lLSRKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLR 422


                ....*
gi 25057130 296 MCYAM 300
Cdd:COG1007 423 VVKAM 427
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 8-300 3.73e-17

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 82.30  E-value: 3.73e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130     8 ILLSSLGIGttLTFASSHWLLAWMGLEINTLAIIPLMA-QQHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGEWNI 86
Cdd:TIGR01770 108 LLFALLGIF--LLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNF 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130    87 QEMSNP------------TALTLITMALALKIGLAPIHYWLPEVLQGLDLTTGLILSTWQKLAPFAL--------IYQIS 146
Cdd:TIGR01770 186 EDLLLFlsngmlnislllLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVflrlflyiLFGFS 265

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130   147 PMMNPTLMItLGLASTIVGGWGGLNQTQLRKILAYSSIAHLGWMMV----IMQYSPSLAMLNLTLYIIMTTATFLTFKNV 222
Cdd:TIGR01770 266 EAWQIFLAI-IAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIgllaGTLEGIKAVLFYIFIYALMSLGAFGVLSLL 344

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130   223 TSTK---------LNALALTWSktpMMTTMAMMTLLSLGGLPPLTGFMPKWLILQELTKQNLPLTASIMAMAALLSLFFY 293
Cdd:TIGR01770 345 RSYKdewieyisdFAGLFKTNP---ILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYY 421


                  ....*..
gi 25057130   294 LRMCYAM 300
Cdd:TIGR01770 422 LRVVKVM 428
 
Name Accession Description Interval E-value
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-348 0e+00

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 541.32  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130    1 MNPYVFAILLSSLGIGTTLTFASSHWLLAWMGLEINTLAIIPLMAQQHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130   81 TGEWNIQEMSNPTALTLITMALALKIGLAPIHYWLPEVLQGLDLTTGLILSTWQKLAPFALIYQISPMmNPTLMITLGLA 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130  161 STIVGGWGGLNQTQLRKILAYSSIAHLGWMMVIMQYSPSLAMLNLTLYIIMTTATFLTFKNVTSTKLNALALTWSKTPMM 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130  241 TTMAMMTLLSLGGLPPLTGFMPKWLILQELTKQNLPLTASIMAMAALLSLFFYLRMCYAMTLTISPNTNNNTSTWRQKSS 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319

                        330       340
                 ....*....|....*....|....*...
gi 25057130  321 QTTMTLSITTLLALTLLPTTPTIMALMT 348
Cdd:MTH00135 320 QLTLPLAISTTATLMLLPLTPAILALLT 347
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-324 5.55e-146

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 415.86  E-value: 5.55e-146
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130    1 MNPYVFAILLSSLGIGTTLTFASSHWLLAWMGLEINTLAIIPLMAQQHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130   81 TGEWNIQEMSNPTALTLITMALALKIGLAPIHYWLPEVLQGLDLTTGLILSTWQKLAPFALIYQISPMMNPTLMITLGLA 160
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130  161 STIVGGWGGLNQTQLRKILAYSSIAHLGWMMVIMQYSPSLAMLNLTLYIIMTTATFLTFKNVTSTKLNALALTWSKTPMM 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130  241 TTMAMMTLLSLGGLPPLTGFMPKWLILQELTKQNLPLTASIMAMAALLSLFFYLRMCYAMTLTISPNTNNNTSTWRQKSS 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320


                 ....
gi 25057130  321 QTTM 324
Cdd:MTH00070 321 TNNL 324
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-324 9.80e-129

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 371.85  E-value: 9.80e-129
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130    1 MNPYVFAILLSSLGIGTTLTFASSHWLLAWMGLEINTLAIIPLMAQQHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130   81 TGEWNIQEMSNPTALTLITMALALKIGLAPIHYWLPEVLQGLDLTTGLILSTWQKLAPFALIYQISPMMNPTLMITLGLA 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130  161 STIVGGWGGLNQTQLRKILAYSSIAHLGWMMVIMQYSPSLAMLNLTLYIIMTTATFLTFKNVTSTKLNALALTWSKTPMM 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130  241 TTMAMMTLLSLGGLPPLTGFMPKWLILQELTKQNLPLTASIMAMAALLSLFFYLRMCYAMTLTISPNTNNNTSTWRQKSS 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320


                 ....
gi 25057130  321 QTTM 324
Cdd:MTH00112 321 KNTL 324
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-323 7.43e-126

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 364.94  E-value: 7.43e-126
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130    1 MNPYVFAILLSSLGIGTTLTFASSHWLLAWMGLEINTLAIIPLMAQQHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130   81 TGEWNIQEMSNPTALTLITMALALKIGLAPIHYWLPEVLQGLDLTTGLILSTWQKLAPFALIYQISPMMNPTLMITLGLA 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130  161 STIVGGWGGLNQTQLRKILAYSSIAHLGWMMVIMQYSPSLAMLNLTLYIIMTTATFLTFKNVTSTKLNALALTWSKTPMM 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130  241 TTMAMMTLLSLGGLPPLTGFMPKWLILQELTKQNLPLTASIMAMAALLSLFFYLRMCYAMTLTISPNTNNNTSTWRQKSS 320
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320


                 ...
gi 25057130  321 QTT 323
Cdd:MTH00105 321 KPM 323
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-320 2.55e-115

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 338.10  E-value: 2.55e-115
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130    1 MNPYVFAILLSSLGIGTTLTFASSHWLLAWMGLEINTLAIIPLMAQQHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80
Cdd:MTH00200   1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130   81 TGEWNIQEMSNPTALTLITMALALKIGLAPIHYWLPEVLQGLDLTTGLILSTWQKLAPFALIYQISPMMNPTLMITLGLA 160
Cdd:MTH00200  81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130  161 STIVGGWGGLNQTQLRKILAYSSIAHLGWMMVIMQYSPSLAMLNLTLYIIMTTATFLTFKNVTSTKLNALALTWSKTPMM 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130  241 TTMAMMTLLSLGGLPPLTGFMPKWLILQELTKQNLPLTASIMAMAALLSLFFYLRMCYAMTLTISPNTNNNTSTWRQKSS 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-322 4.17e-91

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 276.43  E-value: 4.17e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130    1 MNPYVFAILLSSLGIGTTLTFASSHWLLAWMGLEINTLAIIPLMAQQHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80
Cdd:MTH00041   1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130   81 TGEWNIQEMSNPTALTLITMALALKIGLAPIHYWLPEVLQGLDLTTGLILSTWQKLAPFALIYQISPMMNPTLMITLGLA 160
Cdd:MTH00041  81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130  161 STIVGGWGGLNQTQLRKILAYSSIAHLGWMMVIMQYSPSLAMLNLTLYIIMTTATFLTFKNVTSTKLNALALTWSKTPMM 240
Cdd:MTH00041 161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130  241 TTMAMMTLLSLGGLPPLTGFMPKWLILQELTKQNLPLTASIMAMAALLSLFFYLRMCYAMTLTISPNTNNNTSTWRQKSS 320
Cdd:MTH00041 241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGN 320


                 ..
gi 25057130  321 QT 322
Cdd:MTH00041 321 IT 322
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-313 2.76e-54

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 181.17  E-value: 2.76e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130    1 MNPYVFaILLSSLGIGTTLTFASSHWLLAWMGLEINTLAIIPLMAQQHHPRAVEATTKYFLTQATAAAMILFASTTNAwl 80
Cdd:MTH00160   3 MNSSKL-LFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNM-- 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130   81 tgewNIQEMSNPTALTLITMALALKIGLAPIHYWLPEVLQGLDLTTGLILSTWQKLAPFALIYQispMMNPTLMITLGLA 160
Cdd:MTH00160  80 ----LNLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSY---LINNNFIIIIIIL 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130  161 STIVGGWGGLNQTQLRKILAYSSIAHLGWMMVIMQYSPSLAMLNLTLYIIMTTATFLTFKNVTSTKLNALALTWSKTPMM 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 25057130  241 TTMAMMTLLSLGGLPPLTGFMPKWLILQELTKQNLPLTASIMAMAALLSLFFYLRMCYAMTLTISPNTNNNTS 313
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLK 305
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 10-320 1.85e-48

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 165.83  E-value: 1.85e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130   10 LSSLGIGTTLTFASSHWLLAWMGLEINTLAIIPLMAQQHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGEWNIqem 89
Cdd:MTH00144  10 LFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFS--- 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130   90 snptaLTLITMALALKIGLAPIHYWLPEVLQGLDLTTGLILSTWQKLAPFALIYQISPMMNP-TLMITLGLASTIVGGWG 168
Cdd:MTH00144  87 -----MSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSALVGSIG 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130  169 GLNQTQLRKILAYSSIAHLGWMMVIMQYSPSLAMLNLTLYIIMTtaTFLTFKNVTSTKLNALALTWSKTPMMTTMAMMTL 248
Cdd:MTH00144 162 GLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSS--GFLFFSLWSGDSGSMKDLGSLKPSYKTGLSIISL 239

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 25057130  249 LSLGG-LPPLTGFMPKWLILQELTKQNLPLTASIMAMAALLSLFFYLRMCYAMTLTISPNTNNNTSTWRQKSS 320
Cdd:MTH00144 240 LLSLGgLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKVLNSSI 312
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 7-314 3.22e-47

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 162.64  E-value: 3.22e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130    7 AILLSSLGIGTTLTFASSHWLLAWMGLEINTLAIIPLMAQQHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGEwni 86
Cdd:MTH00011   9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMMWSFPSL--- 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130   87 qeMSNPTALTlITMALALKIGLAPIHYWLPEVLQGLDLTTGLILSTWQKLAPFALIYQISPMMNPTLMITLGLASTIVGG 166
Cdd:MTH00011  86 --LKNITALM-LLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGG 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130  167 WGGLNQTQLRKILAYSSIAHLGWMMVIMQYSPSLAMLNLTLYIIMTTATFLTFKNVTSTKLNALALTWSKTPMMTTMAMM 246
Cdd:MTH00011 163 LGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFI 242

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 25057130  247 TLLSLGGLPPLTGFMPKWLILQELTKQNLPLTASIMAMAALLSLFFYLRMCYAMTlTISPNTNNNTST 314
Cdd:MTH00011 243 MLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFM-YLSPTFSSLKSA 309
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 8-298 1.50e-39

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 142.12  E-value: 1.50e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130    8 ILLSSLGIGTTLTFASSHWLLAWMGLEINTLAIIPLMAQQHHPRAVEATTKYFLTQATAAAMILF---ASTTNAWLTGEW 84
Cdd:MTH00197   2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMggsLSFSNLYLSLLS 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130   85 NIqemsnptaltLITMALALKIGLAPIHYWLPEVLQGLDLTTGLILSTWQKLAPFALIYQISPmmNPTLMITLGLASTIV 164
Cdd:MTH00197  82 VV----------LVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSS--SFMGLLICSVLSSLI 149

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130  165 GGWGGLNQTQLRKILAYSSIAHLGWMMVIMQYSPSLAMLNLTLYIIMTTATFLTFKNVTSTKLNALALTWSKTPMMTTMA 244
Cdd:MTH00197 150 GGIGGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFL 229

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 25057130  245 MMTLLSLGGLPPLTGFMPKWLILQELTKQNLPLTASIMAMAALLSLFFYLRMCY 298
Cdd:MTH00197 230 GLSFLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAY 283
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 15-296 9.74e-24

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 100.10  E-value: 9.74e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130   15 IGTTLTFASSHWLLAWMGLEINTLAIIPLMAQQHHP-RAVEATTKYFLTQATAAAMILFASTTNAWLTGEWNIQ------ 87
Cdd:MTH00196   4 LGILCLISSSNWLSVYLAIELQTLSLFILIAQNRGSgYSAEAGLKYFVLGALSSGLFLFGCALLCGTTGGLHLSyinlvl 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130   88 -------EMSNPTALTLITMALALKIGLAPIHYWLPEVLQGLDLTTGLILSTWQKLAPFALIYQISPMMNPTLMitLGLA 160
Cdd:MTH00196  84 nsgqsfsSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVNILLI--GGLF 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130  161 STIVGGWGGLNQTQLRKILAYSSIAHLG---WMMVIMQY-SPSLAMLNLTLYIIMTTATF---LTFKNVT---------S 224
Cdd:MTH00196 162 SLFVGAIGALNQTKIKRLLAYSGIGHMGfvlWGIEIGSFeSIQASLVYLFIYIIMSICVFsiiLALNVYKnliiefsglS 241

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 25057130  225 TKLNALALTwsktpmmttmAMMTLLSLGGLPPLTGFMPKWLILQELTKQNLPLTASIMAMAALLSLFFYLRM 296
Cdd:MTH00196 242 RRLPILAIT----------LALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 8.24e-23

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 96.23  E-value: 8.24e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130    23 SSHWLLAWMGLEINTLAIIPLMA-QQHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGEWNIQEMSNPTALT----- 96
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGlnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130    97 ------LITMALALKIGLAPIHYWLPEVLQGLDLTTGLIL-STWQKLAPFALIYQISPMMNPT-----LMITLGLASTIV 164
Cdd:pfam00361  81 llllflLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIRRSLLYLPSSpfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130   165 GGWGGLNQTQLRKILAYSSIAHLGWMMVIM----QYSPSLAMLNLTLYIIMTTATFLTFKNVT-----STKLNALALTWS 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSVIyrrvhTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 25057130   236 KTPMMTTMAMMTLLSLGGLPPLTGFMPKWLILQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 6-300 2.31e-22

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 97.49  E-value: 2.31e-22
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130   6 FAILLSSLgIGTTLTFASSHWLLAWMGLEINTLAIIPLMA-QQHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGEW 84
Cdd:COG1007 105 YALLLFAT-LGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSL 183

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130  85 NIQEMSNP------------TALTLITMALALKIGLAPIHYWLPEVLQGLDLTTGLILSTWQKLAPFALIYQI------- 145
Cdd:COG1007 184 NLAGIAAAlaaggansplllLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLlveafpg 263

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130 146 -SPMMNPTLMItLGLASTIVGGWGGLNQTQLRKILAYSSIAHLGWMMVIM----QYSPSLAMLNLTLYIIMTTATF---- 216
Cdd:COG1007 264 lAADWQLLLAV-LAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLaagtPLGVSAALFYLLAYLFMNLGAFavil 342

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130 217 -LTFKNVTSTKLNALALTWSKTPMMTTMAMMTLLSLGGLPPLTGFMPKWLILQELTKQNLPLTASIMAMAALLSLFFYLR 295
Cdd:COG1007 343 lLSRKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLR 422


                ....*
gi 25057130 296 MCYAM 300
Cdd:COG1007 423 VVKAM 427
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 6-226 2.18e-21

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 94.70  E-value: 2.18e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130    6 FAILLSSLGIGTTLTFASSHWLLAWMGLEINTLAIIPLMA-QQHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGEW 84
Cdd:MTH00199  99 SPILILIVALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGET 178

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130   85 NIQE----MSNPTALTLITMALALKIGLAPIHYWLPEVLQGLDLTTGLILSTWQKLAPFALIYQISPMMNptLMITLGLA 160
Cdd:MTH00199 179 SIQGinsiLTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTN--VVLICAVL 256

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130  161 STIVGGWGGLNQTQLRKILAYSSIAHLG---WMMVIMQYSPSLAML-NLTLYIIMTTATFLTFKNVTSTK 226
Cdd:MTH00199 257 SIIYGAIGALNQTKIKRLLAYSGIGHMGfilFGVAIGSFESIQASLiYMIIYVIMSICSFSIILSLKLTK 326
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
8-300 3.25e-18

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 85.26  E-value: 3.25e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130    8 ILLSSLGIgttLTFASS-HWLLAWMGLEINTLAIIPLMA-QQHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGEWN 85
Cdd:PRK05777 109 VLFALLGM---MVMVSAnDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLS 185

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130   86 IQEMSNPTALT------------LITMALALKIGLAPIHYWLPEVLQGLDLTTGLILSTWQKLAPFALIYQISPMMNPTL 153
Cdd:PRK05777 186 FAGIAKALADGsgnsllllfglvFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLLRLLVVAFGGL 265

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130  154 -------MITLGLASTIVGGWGGLNQTQLRKILAYSSIAHLGWMMVIM----QYSPSLAMLNLTLYIIMTTATF-----L 217
Cdd:PRK05777 266 sedwqqvLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLaagtAEGYSAVLFYLLAYLFMTLGAFgvislL 345

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130  218 TFKNVTSTKLNALALTWSKTPMMTTMAMMTLLSLGGLPPLTGFMPKWLILQELTKQNLPLTASIMAMAALLSLFFYLRMC 297
Cdd:PRK05777 346 RRKGGEAESISDFAGLSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRVI 425


                 ...
gi 25057130  298 YAM 300
Cdd:PRK05777 426 KLM 428
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 8-300 3.73e-17

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 82.30  E-value: 3.73e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130     8 ILLSSLGIGttLTFASSHWLLAWMGLEINTLAIIPLMA-QQHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGEWNI 86
Cdd:TIGR01770 108 LLFALLGIF--LLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNF 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130    87 QEMSNP------------TALTLITMALALKIGLAPIHYWLPEVLQGLDLTTGLILSTWQKLAPFAL--------IYQIS 146
Cdd:TIGR01770 186 EDLLLFlsngmlnislllLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVflrlflyiLFGFS 265

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130   147 PMMNPTLMItLGLASTIVGGWGGLNQTQLRKILAYSSIAHLGWMMV----IMQYSPSLAMLNLTLYIIMTTATFLTFKNV 222
Cdd:TIGR01770 266 EAWQIFLAI-IAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIgllaGTLEGIKAVLFYIFIYALMSLGAFGVLSLL 344

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130   223 TSTK---------LNALALTWSktpMMTTMAMMTLLSLGGLPPLTGFMPKWLILQELTKQNLPLTASIMAMAALLSLFFY 293
Cdd:TIGR01770 345 RSYKdewieyisdFAGLFKTNP---ILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYY 421


                  ....*..
gi 25057130   294 LRMCYAM 300
Cdd:TIGR01770 422 LRVVKVM 428
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 2-300 2.55e-15

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 76.34  E-value: 2.55e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130   2 NPYVFAILLSSLGIGTTLTFASSHWLLAWMGLEINTLAIIPLMAQQHHPRAVEATTKYFLTQATAAAMILFASTTNAWLT 81
Cdd:COG0651 105 RGRRFYPLFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGAT 184

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130  82 GEWNIQEMSN----------PTALTLITMALALKIGLAPIHYWLPE-----------VLQGLDLTTGL--ILSTWQKLAP 138
Cdd:COG0651 185 GTLNMADLAArlaeldpgllLAAFALLLVGFGIKAALFPLHFWLPDaypaapspvsaLLSGLLTKVGVyaILRVLTLLFG 264

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130 139 FALIYQISPmmnptLMITLGLASTIVGGWGGLNQTQLRKILAYSSIAHLGWMMVIMQYSPSLAMLNLTLYII----MTTA 214
Cdd:COG0651 265 ADPALFLGT-----LLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLLnhalAKAL 339

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130 215 TFLTFKNVT----STKLNALALTWSKTPMMTTMAMMTLLSLGGLPPLTGFMPKWLILQELTKQNLPLTASIMAMAALLSL 290
Cdd:COG0651 340 LFLAAGAIEratgTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTL 419

                       330
                ....*....|
gi 25057130 291 FFYLRMCYAM 300
Cdd:COG0651 420 AYFVRIFGRA 429
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 6-192 2.66e-15

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 76.82  E-value: 2.66e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130    6 FAILLSsLGIGTTLTFASSHWLLAWMGLEINTLAIIPLMAQQHHPRAV---------EATTKYFLTQATAAAMILFASTT 76
Cdd:MTH00198 191 FALVLI-VGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCAL 269

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130   77 NAWLTGE--------------WNIQEMSNPTALTLITMALALKIGLAPIHYWLPEVLQGLDLTTGLILSTWQKLAPFALI 142
Cdd:MTH00198 270 YFGFTGNegmlgtilsatletTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILL 349

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 25057130  143 yqISPMMNPTLMITLGLASTIVGGWGGLNQTQLRKILAYSSIAHLGWMMV 192
Cdd:MTH00198 350 --TSLVITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILI 397
ndhB CHL00049
NADH dehydrogenase subunit 2
 51-216 1.36e-09

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 59.25  E-value: 1.36e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130   51 RAVEATTKYFLTQATAAAMILFASTtnaWL----TGEWNIQE---------MSNPT----ALTLITMALALKIGLAPIHY 113
Cdd:CHL00049 159 RSNEATMKYLLMGGASSSILVYGFS---WLyglsGGEIELQEivnglintqMYNSPgisiALIFITVGIGFKLSLAPFHQ 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130  114 WLPEVLQGLDLTTGLILSTWQKLAPFALIYQISPMMNPT-------LMITLGLASTIVGGWGGLNQTQLRKILAYSSIAH 186
Cdd:CHL00049 236 WTPDVYEGSPTPVVAFLSVTSKVAASALATRIFDIPFYFssnewhlLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQ 315

                        170       180       190
                 ....*....|....*....|....*....|....*
gi 25057130  187 LGWMMV-IMQYSPSL---AMLNLTL-YIIMTTATF 216
Cdd:CHL00049 316 IGYVIIgIIVGDSNDgyaSMITYMLfYIFMNLGTF 350
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 44-300 2.27e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 55.36  E-value: 2.27e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130   44 MAQQHHPRAVEATTKYFLTQATAAAMILFA--------STTN-----AWLTGEWNIQEMS---NPTALTLITMALAL--- 104
Cdd:PRK12667 154 AYYRDRGDAVEAAIKYALIGAVGTTLYFLAlaflyatfGTLNmadlsAKIRGLSFPLTGGlagNPPLALGVALALALwaf 233

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130  105 --KIGLAPIHYWLPEV-----------LQGLDLTTG---------LILSTWQKLAPFALIYQIspmmnptLMITLGLAST 162
Cdd:PRK12667 234 tiKAAIFPNHFWLPDAhpaapspvsamLSGLVVNVGayaiirflyTIFGISPSLIDFRAALSP-------ILIILGAVSA 306

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130  163 IVGGWGGLNQTQLRKILAYSSIAHLGWMMVIMQYSPSLAMLNLTLYII----------MTTATFLtfKNVTSTKLNALAL 232
Cdd:PRK12667 307 IIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIInhaiaksllfLASGVFI--HAAGTRDIDELAG 384

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 25057130  233 TWSKTPMMTTMAMMTLLSLGGLPPLTGFMPKWLILQELTKQNLPLTASIMAMAALLSLFFYLRMCYAM 300
Cdd:PRK12667 385 LGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWYSL 452
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-210 2.70e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 55.27  E-value: 2.70e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130   33 LEINTLAIIPLMAQQHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGEWNIQEMSNP--------TALTLITMALAL 104
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAGAlaenptvvTAFGFVLLALAL 214

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130  105 KIGLAPIHYWLPEVLQGLDLTTGLILS-TWQKLAPFALI------YQISPMMNPTL---MITLGLASTIVGGWGGLNQTQ 174
Cdd:PRK08375 215 KAAVFPLHTWLPRAYPAAPPVVTALLSgLVTKVAVYALIriyftvFGGDFRFALGLgwlLAVLALLSMLVGSLAALGQDD 294

                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 25057130  175 LRKILAYSSIAHLGWMMVIMQYSPSLAMLNLTLYII 210
Cdd:PRK08375 295 VKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLL 330
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-300 2.46e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 52.02  E-value: 2.46e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130   33 LEINTLAIIPLMAQQHH-PRAVEATTKYFLTQATAAAMILFASttnAWLTGEWNIQEMS--------NPT-----ALTLI 98
Cdd:PRK08376 150 LEIMSIASYALVAFRNDtWEAIEAGIKYMFVGSLASSMVLLGI---ALLYGQYGTLNMAylavkmseNPTvvakiALALF 226

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130   99 TMALALKIGLAPIHYWLPEVLQGL--DLTTGLILSTWQKL-APFALIYQI-SPMMNPT----LMITLGLASTIVGGWGGL 170
Cdd:PRK08376 227 IAGLAMKSGAVPVHMWLPDAYPAApsSISAMLLVIKQAGLyALARVLFSIyGPAINLAtvgwVIIILGCLTMFVGVAMAV 306

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130  171 NQTQLRKILAYSSIAHLGWMMV-----IMQYSPSL-----------AMLNLTLYIIMTTATFLT----FKNVTSTKLNAL 230
Cdd:PRK08376 307 VQKDVKRLLAYHSVSQIGYMLLglgvgLAALGDPAmasygeialagGIYHIVNHALYKALLFLTagavIYETGTRNLNEL 386

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130  231 ALTWSKTPMMTTMAMMTLLSLGGLPPLTGFMPKWLILQELTKQNlPLTASIMAMAALLSLFFYLRMCYAM 300
Cdd:PRK08376 387 GGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIYESSALFN-PILGVIAMIGSVLTLASFVKVFHTA 455
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-192 5.74e-07

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 51.09  E-value: 5.74e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130    50 PRAVEATTKYFLTQATAAAMILFASTTNAWLTG------EWNIQEMSNPTALTL---ITMALALKIGLAPIHYWLPEV-L 119
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGgtfdllELLNLPLPFGVQTWLflaFFIAFAVKVPLFPLHTWLPDAhV 231

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 25057130   120 QGLDLTTGLILSTWQKLAPFALIYQISPMMN------PTLMITLGLASTIVGGWGGLNQTQLRKILAYSSIAHLGWMMV 192
Cdd:TIGR01972 232 EAPTAGSVILAGVLLKMGTYGFLRFNLPLFPdaslyfAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLL 310
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 49-192 1.23e-06

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 50.08  E-value: 1.23e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130  49 HPRAVEATTKYFLTQATAAAMILFASTTNAWLTGEW--NIQEMSN----PTALTLI----TMALALKIGLAPIHYWLPEV 118
Cdd:COG1008 156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAaplpLTAQLLLflafFIAFAVKVPMFPFHTWLPDA 235

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130 119 LQ-----GLDLTTGLILstwqKLAPFALIyQISPMMNP-------TLMITLGLASTIVGGWGGLNQTQLRKILAYSSIAH 186
Cdd:COG1008 236 HVeaptaGSVLLAGVLL----KMGGYGLL-RFALPLFPeasayfaPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSH 310


                ....*.
gi 25057130 187 LGWMMV 192
Cdd:COG1008 311 MGFVLL 316
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
55-203 1.92e-06

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 49.33  E-value: 1.92e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130   55 ATTKYFLTQATAAAMILFASTTNAWLTGEWNI-------QEMSNPTALTLITMAL---ALKIGLAPIHYWLPEVLQGLDL 124
Cdd:PRK07363 158 ASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSFdydaistQNLSLNTQLILLTGLLlgfGIKIPLVPLHTWLPDAYTEASP 237

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130  125 TTGLILS-TWQKLAPFALI---YQISP----MMNPTLMItLGLASTIVGGWGGLNQTQLRKILAYSSIAHLGWMMVIMQY 196
Cdd:PRK07363 238 AVAILLGgVLAKLGTYGLLrfgLQLFPqtwsLVAPGLAI-IGTISVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAA 316


                 ....*..
gi 25057130  197 SPSLAML 203
Cdd:PRK07363 317 GTQLSLL 323
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 4-192 3.11e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 48.79  E-value: 3.11e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130    4 YVFAILLSSLGIGTTLTFASSHWLLAWMGLEINTLAIIPLMAQQHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGE 83
Cdd:PRK07234  94 RFFYAQLLILHGSVNAAFVCADLISLYVALEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGT 173

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130   84 WNIQEMSN--PTALTLITMALALKIGLAPIHYWLPEVLQGLDLTTGLILS-TWQKLAPFALIyQISPMMNPTLMI--TLG 158
Cdd:PRK07234 174 FAFSGLATadPEAFALIALGLLVKGGIFVSGLWLPLTHSEAEPPVSALLSgVVVKAGVFPLV-RCALDVPGLDLIvrIFG 252

                        170       180       190
                 ....*....|....*....|....*....|....
gi 25057130  159 LASTIVGGWGGLNQTQLRKILAYSSIAHLGWMMV 192
Cdd:PRK07234 253 VGTALLGVLFALLEKDLKRMLAFSTISQLGFILA 286
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 78-192 3.40e-06

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 48.61  E-value: 3.40e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130  78 AWLTGEWNIQEM-------SNPTALTLITMALAL----KIGLAPIHYWLPEVLQG-----------LDLTTGLILstwqk 135
Cdd:COG1009 186 GAIAGTLNFSELlaaaptiLSSPLLTLILLLLLLgafgKSAQFPLHFWLPDAMEGptpvsallhaaTMVKAGVYL----- 260

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 25057130 136 LAPFALIYQISPMMNpTLMITLGLASTIVGGWGGLNQTQLRKILAYSSIAHLGWMMV 192
Cdd:COG1009 261 LARLSPLFALSPVWL-TVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFL 316
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 5-192 5.74e-06

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 47.83  E-value: 5.74e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130    5 VFAILLSSLGIGTTLTFASSHWLLAWMGLEINTLAIIPLMAQQHHPRAVEATTKYFLTQATA------AAMILFASTTNA 78
Cdd:PRK08676 103 VFYLGFNLLLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQA 182

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130   79 WLTGEWNIQEMSNPTAL----------TLITMALALKIGLAPIHYWLPE-----------VLQGLDLTTGL--ILSTWQK 135
Cdd:PRK08676 183 LGTGTLNWTELAAHASLlspsvlgasfLFIFIGFLAKSGLVPFHTWLPAayakapsvvsaLLSGTVLNIGIygILRLSAL 262

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 25057130  136 LAPFALIYQISPmmnptLMITLGLASTIVGGWGGLNQTQLRKILAYSSIAHLGWMMV 192
Cdd:PRK08676 263 LRQSGAAEQFSN-----VLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLL 314
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 291-324 6.01e-06

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 43.02  E-value: 6.01e-06
                          10        20        30
                  ....*....|....*....|....*....|....
gi 25057130   291 FFYLRMCYAMTLTISPNTNNNTSTWRQKSSQTTM 324
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTL 34
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 81-207 7.61e-06

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 47.61  E-value: 7.61e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130   81 TGEWNIQEM-SNPTALTLITMALAL-------KIGLAPIHYWLPEVLQGLDLTTGLILSTWQKLAPFALIYQISPMMNPT 152
Cdd:PRK12644 184 AGTYRLSELlADPPTGPAVSVAVVLilvgalsKSAIVPFHFWLPGAMAAPTPVSAYLHAAAMVKAGIYLVARLAPGFADV 263

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 25057130  153 -----LMITLGLASTIVGGWGGLNQTQLRKILAYSSIAHLGWMMVIMQY-SPSLAMLNLTL 207
Cdd:PRK12644 264 pvwrpTVLVLGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIgTRDAALAGLAM 324
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
3-210 9.51e-06

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 47.39  E-value: 9.51e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130    3 PYVFAILLSSLGIGTTLTFASSHWLLAWMGLEINTLAIIPLMAQQHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTG 82
Cdd:PRK06473 106 PRFYYSLLLLLNAGVSGAFLAQDLLLFFLFYELELIPLYLLIAIWGGQRRGYAATKFLLYTAISGILILVSFLGLVWLSG 185

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130   83 EWNIQ-EMSNPTALTLIT---------MALALKIGLAPIHYWLPE-----------VLQG--LDLTT--------GLILS 131
Cdd:PRK06473 186 ASSFDyEPLRSHTLPLSTqllllapilVGFGIKIPLVPFHTWLPDahveastpvsvLLAGvlLKLGTygllrfgvGLFPE 265

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 25057130  132 TWQKLAPFaliyqispmmnptlMITLGLASTIVGGWGGLNQTQLRKILAYSSIAHLGWMMVIMQYSPSLAMLNLTLYII 210
Cdd:PRK06473 266 AWVYLAPW--------------LATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILLAAAAATPLSILAAVFQMI 330
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 9-302 1.22e-05

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 46.91  E-value: 1.22e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130    9 LLSSLGIGTTL-TFASSHWLLAWMGLEINTLAIIpLMAQQHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGEWNI- 86
Cdd:PRK08668 102 MFALMSLAGVLgVFLANDLLTLYIFWEIMTFSSF-MMVPMGKKESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFa 180

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130   87 ---QEMSNPT--------ALTLITMALAlKIGLAPIHYWLPEVLQGLDLTTGLILS-TWQKLAPFALIYQISPMMNPTL- 153
Cdd:PRK08668 181 disQGLINDTstgfalivFLFLLAFGVA-KAGIFPLHVWAPDAYSEAPQSFSAVLSgQLSKLGAYGFLLVLYVLPGTKLf 259

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130  154 ---------------MITLGLASTIVGGWGGLNQTQLRKILAYSSIAHLGWMMVIMQYSPSL----AMLNLTLYIIMTTA 214
Cdd:PRK08668 260 sefgtyrgvplfnyiLAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLgfagGLFHVFNHALFKGL 339

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130  215 TFLTFKNVT----STKLNALALTWSKTPMMTTMAMMTLLSLGGLPPLTGFMPKWLILQELTKQNLPLTASIMAMAALLSL 290
Cdd:PRK08668 340 FFLIFAAVIyrtgTTKISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMAFFGSIGSF 419

                        330
                 ....*....|..
gi 25057130  291 FFYLRMCYAMTL 302
Cdd:PRK08668 420 LYVFRPLAGVFL 431
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 47-197 2.91e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 45.98  E-value: 2.91e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130   47 QHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGEWNIQEMSNPTA--------------LTLITMALALKIGLAPIH 112
Cdd:PRK12649 155 RHRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSElienikghplflitLILIFIGAAAKSAQGPFY 234

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130  113 YWLPEVLQGLDLTTGLILSTWQKLAPFALIYQISPMMNPT-----LMITLGLASTIVGGWGGLNQTQLRKILAYSSIAHL 187
Cdd:PRK12649 235 IWLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQL 314

                        170
                 ....*....|
gi 25057130  188 GWMMVIMQYS 197
Cdd:PRK12649 315 AYLMTMYGYT 324
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 3-192 6.72e-05

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 44.64  E-value: 6.72e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130    3 PYVFAILLSSLGIGTTLTFASSHWLLAWMGLEINTLAIIPLMAQQHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTG 82
Cdd:PRK12561  86 PRLFYFLMLVLYSAQIGVFLAQDLLLFFLMWELELVPVYLLISIWGGQKRLYAATKFILYTALASIFILVAGLALALSGD 165

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130   83 E--WNIQEMSN---PTALTLIT-----MALALKIGLAPIHYWLPE-----------VLQGLDLTTG---LILSTWQKLaP 138
Cdd:PRK12561 166 TftFDLAELGAksyPLALELLLyagflIAFGVKLPIFPLHTWLPDahgeasapvsmILAGVLLKMGgyaLIRFNVQML-P 244

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 25057130  139 FALIYqispmMNPTLMItLGLASTIVGGWGGLNQTQLRKILAYSSIAHLGWMMV 192
Cdd:PRK12561 245 DAHVY-----FAPALAI-LGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLL 292
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 19-192 1.16e-04

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 43.77  E-value: 1.16e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130   19 LTFASSHWLLAWMGLEINTLAIIPLMAQQHHPRAVEATTKYF---------------LTQATAAAMILFASTTNAWlTGE 83
Cdd:PRK06458 123 LALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIiicsvgvafalfgtiLVYANAATVMGDGEMAILW-TEL 201

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130   84 WNIQEMSNPTaLTLITMALAL-----KIGLAPIHYWLPE-----------VLQGLDLTTGL-ILSTWQKLAPFAliyqIS 146
Cdd:PRK06458 202 LKHASLLDPT-LMKLAFVFLLigfgtKVGLFPMHAWLPDahseapspvsaLLSGVLLNVALyAVLRYYILIDAA----IG 276

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 25057130  147 PMMNPTLMITLGLASTIVGGWGGLNQTQLRKILAYSSIAHLGWMMV 192
Cdd:PRK06458 277 SDFPGRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAF 322
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
 100-188 2.52e-04

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 42.73  E-value: 2.52e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130  100 MALALKIGLAPIHYWLPE-----------VLQGLDLTTG---LILSTWqKLAPFALIYqISPmmnptLMITLGLASTIVG 165
Cdd:MTH00217 214 LSLAIKIPKIPFHIWLPQahveapvagsvILAGVLLKLGgygFIRFSW-PLLPEASEY-FSP-----LIQTLSLLAIIYG 286

                         90       100
                 ....*....|....*....|...
gi 25057130  166 GWGGLNQTQLRKILAYSSIAHLG 188
Cdd:MTH00217 287 SLTTCRQVDLKRIIAYSSVAHMG 309
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
110-216 2.84e-04

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 42.70  E-value: 2.84e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130  110 PIHYWLPEVLQGLDLTTGLILSTWQKLAPFALIYQISPMMN--PTLMITLGLASTI---VGGWGGLNQTQLRKILAYSSI 184
Cdd:PRK07376 245 PLHVWLPDAMEGPTPISALIHAATMVAAGVFLVARMYPVFEqfPAVMTVIAWTGAItafLGASIALTQNDIKKGLAYSTI 324

                         90       100       110
                 ....*....|....*....|....*....|...
gi 25057130  185 AHLGWMMVIMQY-SPSLAMLNLtlyiiMTTATF 216
Cdd:PRK07376 325 SQLGYMVMAMGCgAYSAGLFHL-----MTHAYF 352
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 98-188 3.04e-04

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 42.60  E-value: 3.04e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130   98 ITMALALKIGLAPIHYWLPEV-----LQGLDLTTGLILstwqKLAPFALI---YQISPMMNPTL---MITLGLASTIVGG 166
Cdd:MTH00226 236 IFLAMAVKIPIFPFHIWLPKAhveapVAGSVLLAGILL----KLGGYGLVrlsWPILPLGAQNLapaVIAMGIVGIVYGS 311

                         90       100
                 ....*....|....*....|..
gi 25057130  167 WGGLNQTQLRKILAYSSIAHLG 188
Cdd:MTH00226 312 FATCRQIDVKRLVAYSSVAHMG 333
PRK12650 PRK12650
DUF4040 family protein;
97-190 4.34e-04

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 42.34  E-value: 4.34e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130   97 LITMALALKIGLAPIHYWLPEVLQGLDLTTGLILSTWQKLAPFALIYQISPMM--NPT---LMITLGLASTIVGGWGGLN 171
Cdd:PRK12650 213 LIAVAAFTKSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFhdVAVwnwLLIIVGMITALMGAVFAVQ 292

                         90
                 ....*....|....*....
gi 25057130  172 QTQLRKILAYSSIAHLGWM 190
Cdd:PRK12650 293 KTDLKKLTAYSTVSQLGWI 311
PRK06591 PRK06591
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-309 4.56e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235837 [Multi-domain]  Cd Length: 432  Bit Score: 41.69  E-value: 4.56e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130   33 LEINTLAIIPLMAQQHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGEWNI-------QEMSNPTALTLITM----A 101
Cdd:PRK06591 144 IEISALSSYVLIASGNNPKSLIGAFDYLIMGSIGATLILIAIGFLLSITGSLNMtdiaaylQEHTNSRIITIAIGffliG 223

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130  102 LALKIGLAPIHYWLpevLQGLDLTTGLILSTwqkLAPFALI----------YQISPMMNPTLMIT-----LGLASTIVGG 166
Cdd:PRK06591 224 AILKTAFFPMHFWM---MRAYNNTASVILVY---LAGISTIigiyiiykftYIIIGYETIKTAITnfirpIALATLIIAP 297

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130  167 WGGLNQTQLRKILAYSSIAHLGWMMVIMQYSPSLAMLN--LTLYIIMTTATFLTFKNVTSTKLNALALtwsktpmmttMA 244
Cdd:PRK06591 298 YFAYQAKNFKNIIIYSCFTQIGYVFLLYVTENGIIILPslLLADSINKIALFLIDAYNESYKREPNKV----------LI 367

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 25057130  245 MMTLLSLGGLPPLTGFMPKWLILQELTKQNLPLTASIMAMAALLSLFFYLRMCYAMTLTISPNTN 309
Cdd:PRK06591 368 IIAIICSCGLPISPLFFIKVNILELLLTQNLLLDFIIILLSSVGSLFYHYKMVLLLFPTKQESHS 432
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 50-192 7.44e-04

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 41.34  E-value: 7.44e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130   50 PRAVEATTKYFL-TQATAAAM---ILFASTTNAWLTGEWNIQEMSN----PTALTLITMAL----ALKIGLAPIHYWLPE 117
Cdd:PRK05846 157 KNRIYAATKFFLyTLLGSLLMlvaIIYLVVVYYNATGTFDIADLLNlplpPGVQYWLFLAFfiafAVKMPMFPLHTWLPD 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130  118 VLQ-----GLDLTTGLILstwqKLAPFALIYQISPMMnP-------TLMITLGLASTIVGGWGGLNQTQLRKILAYSSIA 185
Cdd:PRK05846 237 AHVqaptaGSVLLAGILL----KMGAYGLLRFSLPLF-PdashefaPIIITLGVIAIIYGALVALAQTDIKKLIAYSSIS 311


                 ....*..
gi 25057130  186 HLGWMMV 192
Cdd:PRK05846 312 HMGFVTL 318
PRK12668 PRK12668
Na(+)/H(+) antiporter subunit D;
50-192 1.74e-03

Na(+)/H(+) antiporter subunit D;


Pssm-ID: 237168 [Multi-domain]  Cd Length: 581  Bit Score: 40.26  E-value: 1.74e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130   50 PRAVEATTKYFLTQATA-----AAMILFASTTNAWLTGEWNIqemSNPTALTLITMALALKIGLAPIHYWLPEVLQGLDL 124
Cdd:PRK12668 139 KAAVRAGFRYLLVHVLGgvlllAGILLHYAETGSFAFGAIAG---LGGTAAWLILIGFGVNAAFPPLHAWLPDAYPEATV 215

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 25057130  125 TTGLILSTWQ-KLAPFALIYQISPMMnptLMITLGLASTIVGGWGGLNQTQLRKILAYSSIAHLGWMMV 192
Cdd:PRK12668 216 TGSVFLSAFTtKTAVYALARAFPGTE---LLIYIGAAMAVYGVFFALLENDLRRLLSYHIVSQVGYMVA 281
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-263 1.76e-03

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 40.03  E-value: 1.76e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130   50 PRAVEATTKYFLTQATAAAMILFASTTNAWLT-GEWNIQEMS-----NPT-----ALTLITMALALKIGLAPIHYWLPEV 118
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYGSSLLYGLSgGSTQLSAIAlalitSPSlglalALVFVIAGIAFKISAVPFHQWTPDV 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130  119 LQGLDLTTGLILSTWQKLAPFALIYQISPMMNP-------TLMITLGLASTIVGGWGGLNQTQLRKILAYSSIAHLGWMM 191
Cdd:PRK02504 237 YEGSPTPVVAFLSVGSKAAGFALAIRLLVTAFPsfdeqwkLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVM 316

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130  192 VIM----QYSPSLAMLNLTLYIIMTTATFLT---FKNVTST-KLNALALTWSKTPMMTTMAMMTLLSLGGLPPLTGFMPK 263
Cdd:PRK02504 317 IGLvagtEAGYASMVFYLLAYLFMNLGAFACvilFSLRTGTdQISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGFFGK 396
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 6-197 2.44e-03

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 39.75  E-value: 2.44e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130    6 FAILLSSLGIGTTLTFASSHWLLAWMGLEINTLAIIPLMAQQHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGEWN 85
Cdd:PRK08377 110 YAMLFLLLMLGATGMIATGDIFNLFVFMEITAITAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLIGVALIYGATGTLN 189

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130   86 IQEMS------NPT----ALTLITMALALKIGLAPIHYWLPEVLQGLDLTTGLILSTW-QKLAPFALIYQISPMMNPT-- 152
Cdd:PRK08377 190 MAHIAqlagtiDPTvaqvGLALLIFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFvVKAGLYAMARILYLMQNANgw 269

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 25057130  153 -----LMITLGLASTIVGGWGGLNQTQLRKILAYSSIAHLGwmMVIMQYS 197
Cdd:PRK08377 270 ssvlkLVIIMATLTVFFAELSALRQKNVKRMIAYSSIGQVG--MIALALA 317
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 84-200 6.37e-03

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 38.52  E-value: 6.37e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130   84 WNIQEMSNPTALTLITMALAL----KIGLAPIHYWLPEVLQGLDLTTGLILSTWQKLAPFALIYQISPMMN--PTLMI-- 155
Cdd:MTH00020 198 FNMVVSAPSSDITLICLFLFIgavgKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRSSPLFEqaPLALIiv 277

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 25057130  156 ------TLGLASTIvggwgGLNQTQLRKILAYSSIAHLGWMMV---IMQYSPSL 200
Cdd:MTH00020 278 tivgslTVFFAATV-----GLVQNDLKKVIAYSTCSQLGYMVVacgLSHYSISL 326
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
 100-188 6.89e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 38.12  E-value: 6.89e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130  100 MALALKIGLAPIHYWLPEV-----LQGLDLTTGLILstwqKLAPFALI---YQISPM----MNPtLMITLGLASTIVGGW 167
Cdd:MTH00204 217 LSLAVKIPQIPFHIWLPQAhveapVAGSVILAGILL----KLGGYGFLrfsWPLFPAaseyFAP-LIVMLSVIAVIYGSL 291

                         90       100
                 ....*....|....*....|.
gi 25057130  168 GGLNQTQLRKILAYSSIAHLG 188
Cdd:MTH00204 292 TTCRQVDFKRLIAYSSVAHMG 312
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
51-302 7.52e-03

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 38.09  E-value: 7.52e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130   51 RAVEATTKYFLTQATAAAMILFASTTNAWLTGEWNIQEM-----SNPT------ALTLITMALALKIGLAPIHYWLPEVL 119
Cdd:PRK06277 147 EAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDIhnallVNPTspviygGLLLLIFGLLYGSGLPPFHTIKSDIY 226

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130  120 QGLDLTTGLILSTWQKLAPFALIYQISPMMNP--------TLMITLGLASTIVGGWGGLNQTQLRKILAYSSIAHLGWMM 191
Cdd:PRK06277 227 AKAKPFGSALLQTFSKFVLVALMLVIFKLFGGlsyfpsaqGVLIALSVLAMVFGVVMALLQTDYKRLLAYHAISQGGYVA 306

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057130  192 VIM----QYSPSLAMLNLTLYIIMTTATFLTFKNVT----STKLNALALTWSKTPMMTTMAMMTLLSLGGLPPLTGFMPK 263
Cdd:PRK06277 307 AGLalgtPLGIVAGIFHAINHVIYKSALFLGAGIVSyrtkTSNLRKLGGLLPVMPVVAFMVLCAKLAISGVPPFNGFQSK 386

                        250       260       270
                 ....*....|....*....|....*....|....*....
gi 25057130  264 WLILQELTKQNLPLTASIMAMAALLSLFFYLRMCYAMTL 302
Cdd:PRK06277 387 LMLAQAAMQANMPELAIIMIIVSIGTFVSMMKAFYLIYL 425
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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