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Conserved domains on  [gi|159131891|ref|NP_766048|]
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nephrocystin-3 isoform b [Mus musculus]

Protein Classification

OmpH family outer membrane protein( domain architecture ID 12048616)

OmpH family outer membrane protein may play an active role either as folding catalysts or as chaperones in extracytoplasmic compartments; similar to Flavobacterium psychrophilum outer membrane protein P18

Gene Ontology:  GO:0051082|GO:0016020
PubMed:  2318304

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
OmpH pfam03938
Outer membrane protein (OmpH-like); This family includes outer membrane proteins such as OmpH ...
 120-199 2.83e-05

Outer membrane protein (OmpH-like); This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery.


:

Pssm-ID: 461098 [Multi-domain]  Cd Length: 140  Bit Score: 43.72  E-value: 2.83e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159131891  120 KRLRAELQALQKTYQKILREKEGALEAKYQAMER-AVTFEHDRDRVKRQFkifrETKENEIQdllRAKRELESKLQRLQA 198
Cdd:pfam03938  18 KAAQAQLEKKFKKRQAELEAKQKELQKLYEELQKdGALLEEEREEKEQEL----QKKEQELQ---QLQQKAQQELQKKQQ 90


                  .
gi 159131891  199 Q 199
Cdd:pfam03938  91 E 91
 
Name Accession Description Interval E-value
OmpH pfam03938
Outer membrane protein (OmpH-like); This family includes outer membrane proteins such as OmpH ...
 120-199 2.83e-05

Outer membrane protein (OmpH-like); This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery.


Pssm-ID: 461098 [Multi-domain]  Cd Length: 140  Bit Score: 43.72  E-value: 2.83e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159131891  120 KRLRAELQALQKTYQKILREKEGALEAKYQAMER-AVTFEHDRDRVKRQFkifrETKENEIQdllRAKRELESKLQRLQA 198
Cdd:pfam03938  18 KAAQAQLEKKFKKRQAELEAKQKELQKLYEELQKdGALLEEEREEKEQEL----QKKEQELQ---QLQQKAQQELQKKQQ 90


                  .
gi 159131891  199 Q 199
Cdd:pfam03938  91 E 91
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
77-198 4.61e-05

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 45.83  E-value: 4.61e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159131891  77 VPELEYAAAEFERLKKEYEIFRVSKNQELLSMGRREAKLDTENKRLR------AELQALQKTYQKILREKEgALEAKYQA 150
Cdd:PRK03918 285 LKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKeleekeERLEELKKKLKELEKRLE-ELEERHEL 363

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 159131891 151 MERAVTFEHDRDRVKRQFKIFR-ETKENEIQDLLRAKRELESKLQRLQA 198
Cdd:PRK03918 364 YEEAKAKKEELERLKKRLTGLTpEKLEKELEELEKAKEEIEEEISKITA 412
COG2433 COG2433
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
92-198 1.27e-04

Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];


Pssm-ID: 441980 [Multi-domain]  Cd Length: 644  Bit Score: 44.46  E-value: 1.27e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159131891  92 KEYEIFRVSKNQELLSMGRREAKLDTENKRLRAELQALQKTyqkiLREKEGA---LEAKYQAMERAVTFEHDRDR--VKR 166
Cdd:COG2433  395 PEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAE----LEEKDERierLERELSEARSEERREIRKDReiSRL 470

                         90       100       110
                 ....*....|....*....|....*....|..
gi 159131891 167 QFKIFRetKENEIQDLLRAKRELESKLQRLQA 198
Cdd:COG2433  471 DREIER--LERELEEERERIEELKRKLERLKE 500
OmpH smart00935
Outer membrane protein (OmpH-like); This family includes outer membrane proteins such as OmpH ...
 120-204 5.91e-04

Outer membrane protein (OmpH-like); This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery.


Pssm-ID: 214922 [Multi-domain]  Cd Length: 140  Bit Score: 39.87  E-value: 5.91e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159131891   120 KRLRAELQALQKTYQKILREKEGALEAKYQAMERAVTFEHDRDRVKRQFKIfretkENEIQDLLRAKRELESKLQRLQAQ 199
Cdd:smart00935  17 KAAQKQLEKEFKKRQAELEKLEKELQKLKEKLQKDAATLSEAAREKKEKEL-----QKKVQEFQRKQQKLQQDLQKRQQE 91


                   ....*
gi 159131891   200 GIQVF 204
Cdd:smart00935  92 ELQKI 96
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 77-198 1.26e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 41.58  E-value: 1.26e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159131891    77 VPELEYAAAEFERLKKEYEIFRVSKNQELLSMGRREAKLDTENKRLRAELQALQKTYQKILREKEGAL----EAKYQAME 152
Cdd:TIGR02168  360 LEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLkkleEAELKELQ 439

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....
gi 159131891   153 RAV--------TFEHDRDRVKRQFKIFRETKENEIQDLLRAKRELESKLQRLQA 198
Cdd:TIGR02168  440 AELeeleeeleELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDS 493
 
Name Accession Description Interval E-value
OmpH pfam03938
Outer membrane protein (OmpH-like); This family includes outer membrane proteins such as OmpH ...
 120-199 2.83e-05

Outer membrane protein (OmpH-like); This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery.


Pssm-ID: 461098 [Multi-domain]  Cd Length: 140  Bit Score: 43.72  E-value: 2.83e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159131891  120 KRLRAELQALQKTYQKILREKEGALEAKYQAMER-AVTFEHDRDRVKRQFkifrETKENEIQdllRAKRELESKLQRLQA 198
Cdd:pfam03938  18 KAAQAQLEKKFKKRQAELEAKQKELQKLYEELQKdGALLEEEREEKEQEL----QKKEQELQ---QLQQKAQQELQKKQQ 90


                  .
gi 159131891  199 Q 199
Cdd:pfam03938  91 E 91
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
77-198 4.61e-05

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 45.83  E-value: 4.61e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159131891  77 VPELEYAAAEFERLKKEYEIFRVSKNQELLSMGRREAKLDTENKRLR------AELQALQKTYQKILREKEgALEAKYQA 150
Cdd:PRK03918 285 LKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKeleekeERLEELKKKLKELEKRLE-ELEERHEL 363

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 159131891 151 MERAVTFEHDRDRVKRQFKIFR-ETKENEIQDLLRAKRELESKLQRLQA 198
Cdd:PRK03918 364 YEEAKAKKEELERLKKRLTGLTpEKLEKELEELEKAKEEIEEEISKITA 412
COG2433 COG2433
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
92-198 1.27e-04

Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];


Pssm-ID: 441980 [Multi-domain]  Cd Length: 644  Bit Score: 44.46  E-value: 1.27e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159131891  92 KEYEIFRVSKNQELLSMGRREAKLDTENKRLRAELQALQKTyqkiLREKEGA---LEAKYQAMERAVTFEHDRDR--VKR 166
Cdd:COG2433  395 PEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAE----LEEKDERierLERELSEARSEERREIRKDReiSRL 470

                         90       100       110
                 ....*....|....*....|....*....|..
gi 159131891 167 QFKIFRetKENEIQDLLRAKRELESKLQRLQA 198
Cdd:COG2433  471 DREIER--LERELEEERERIEELKRKLERLKE 500
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
79-199 1.28e-04

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 44.37  E-value: 1.28e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159131891  79 ELEYAAAEFERLKKEYEifRVSKNQELLSMGRREAKLDTENKRLRAELQALQKTYQKILREKE--GALEAKYQAMERAVt 156
Cdd:COG4717   96 ELEELEEELEELEAELE--ELREELEKLEKLLQLLPLYQELEALEAELAELPERLEELEERLEelRELEEELEELEAEL- 172

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 159131891 157 fEHDRDRVKRQFKIFRETKENEIQDLLRAKRELESKLQRLQAQ 199
Cdd:COG4717  173 -AELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEE 214
OmpH smart00935
Outer membrane protein (OmpH-like); This family includes outer membrane proteins such as OmpH ...
 120-204 5.91e-04

Outer membrane protein (OmpH-like); This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery.


Pssm-ID: 214922 [Multi-domain]  Cd Length: 140  Bit Score: 39.87  E-value: 5.91e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159131891   120 KRLRAELQALQKTYQKILREKEGALEAKYQAMERAVTFEHDRDRVKRQFKIfretkENEIQDLLRAKRELESKLQRLQAQ 199
Cdd:smart00935  17 KAAQKQLEKEFKKRQAELEKLEKELQKLKEKLQKDAATLSEAAREKKEKEL-----QKKVQEFQRKQQKLQQDLQKRQQE 91


                   ....*
gi 159131891   200 GIQVF 204
Cdd:smart00935  92 ELQKI 96
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 79-199 9.48e-04

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 41.85  E-value: 9.48e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159131891  79 ELEYAAAEFERLKKEYEIFRVSKNQELLSMGRREAKLDT---ENKRLRAELQALQKTYQKILREKEGALEAKYQAMERAV 155
Cdd:COG1196  233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEElrlELEELELELEEAQAEEYELLAELARLEQDIARLEERRR 312

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 159131891 156 TFEHDRDRVKRQfkifRETKENEIQDLLRAKRELESKLQRLQAQ 199
Cdd:COG1196  313 ELEERLEELEEE----LAELEEELEELEEELEELEEELEEAEEE 352
DUF4515 pfam14988
Domain of unknown function (DUF4515); This family of proteins is found in bacteria and ...
 80-202 1.05e-03

Domain of unknown function (DUF4515); This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 198 and 469 amino acids in length. There are two completely conserved L residues that may be functionally important.


Pssm-ID: 405647 [Multi-domain]  Cd Length: 206  Bit Score: 40.14  E-value: 1.05e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159131891   80 LEYAAAEFERLKKEYEIFRVSKNQELLSMGRREAKLDTENKRLRAELQA--LQKtyqkilREKEGALEAKYQAMeravtf 157
Cdd:pfam14988   6 LEYLAKKTEEKQKKIEKLWNQYVQECEEIERRRQELASRYTQQTAELQTqlLQK------EKEQASLKKELQAL------ 73

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 159131891  158 ehdrdrvkRQFKIFRETKENEIQDL----LRAKRELESKLQRLQAQGIQ 202
Cdd:pfam14988  74 --------RPFAKLKESQEREIQDLeeekEKVRAETAEKDREAHLQFLK 114
TolC COG1538
Outer membrane protein TolC [Cell wall/membrane/envelope biogenesis];
105-199 1.25e-03

Outer membrane protein TolC [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 441147 [Multi-domain]  Cd Length: 367  Bit Score: 40.79  E-value: 1.25e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159131891 105 LLSMGRREAKLDTENKRLRAELQALQKTYQKILREKEGALEAKYQAMERAVTFEHDRDRVKRQFKIFRETKEN---EIQD 181
Cdd:COG1538  250 LFDGGRNRARVRAAKAQLEQAEAQYEQTVLQALQEVEDALAALRAAREQLEALEEALEAAEEALELARARYRAglaSLLD 329

                         90
                 ....*....|....*....
gi 159131891 182 LLRAKREL-ESKLQRLQAQ 199
Cdd:COG1538  330 VLDAQRELlQAQLNLIQAR 348
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 77-198 1.26e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 41.58  E-value: 1.26e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159131891    77 VPELEYAAAEFERLKKEYEIFRVSKNQELLSMGRREAKLDTENKRLRAELQALQKTYQKILREKEGAL----EAKYQAME 152
Cdd:TIGR02168  360 LEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLkkleEAELKELQ 439

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....
gi 159131891   153 RAV--------TFEHDRDRVKRQFKIFRETKENEIQDLLRAKRELESKLQRLQA 198
Cdd:TIGR02168  440 AELeeleeeleELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDS 493
Uso1_p115_C pfam04871
Uso1 / p115 like vesicle tethering protein, C terminal region; Also known as General vesicular ...
 110-213 1.52e-03

Uso1 / p115 like vesicle tethering protein, C terminal region; Also known as General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerization, and a short C-terminal acidic region. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the golgi stack. This family consists of the acidic C-terminus, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another.


Pssm-ID: 461461 [Multi-domain]  Cd Length: 121  Bit Score: 38.53  E-value: 1.52e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159131891  110 RREAKLDTENKRLRAELQALQKTYQKIlrEKEGALEAKYQAMERAVtfEHDRDRVKRQFKIFRET---KENEIQDLLRAK 186
Cdd:pfam04871   8 SEASSLKNENTELKAELQELSKQYNSL--EQKESQAKELEAEVKKL--EEALKKLKAELSEEKQKekeKQSELDDLLLLL 83

                          90       100       110
                  ....*....|....*....|....*....|.
gi 159131891  187 RELESKLQRLQAQ----GIQVFDPGESDSDD 213
Cdd:pfam04871  84 GDLEEKVEKYKARlkelGEEVLSDDEDDDED 114
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 74-199 1.87e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 40.69  E-value: 1.87e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159131891  74 GSSVPELEYAAAEFERLKKEYEIFRVSKNQELLSMGRREAKLDTENKRLRAELQALQKTYQKILREKEGALEAKYQAMER 153
Cdd:COG1196  294 LAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAE 373

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 159131891 154 AVTFEHDRDRVKRQFKIFRETKENEIQDLLRAKRELESKLQRLQAQ 199
Cdd:COG1196  374 LAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERL 419
Mitofilin pfam09731
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. ...
 71-198 3.97e-03

Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains.


Pssm-ID: 430783 [Multi-domain]  Cd Length: 618  Bit Score: 39.74  E-value: 3.97e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159131891   71 KSTGSSVPELEYAAAEFErlKKEYEIFRVSKNQELLSMGRRE---AKLDTENKRLRAELQALQKTYQK----ILREKEGA 143
Cdd:pfam09731 247 QYKELVASERIVFQQELV--SIFPDIIPVLKEDNLLSNDDLNsliAHAHREIDQLSKKLAELKKREEKhierALEKQKEE 324

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 159131891  144 LEAkyQAMERAVTFEHDRDRVKRQFKIFRETKENEIQDLLRAKreLESKLQRLQA 198
Cdd:pfam09731 325 LDK--LAEELSARLEEVRAADEAQLRLEFEREREEIRESYEEK--LRTELERQAE 375
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
84-199 4.26e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 39.90  E-value: 4.26e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159131891   84 AAEFERLKKEYEIFRVSKNQELLSmgRREAKLDTENKRLRAELQALQKTYQKiLREKEGALEAKYQameravtfEHDRDR 163
Cdd:COG4913   271 LAELEYLRAALRLWFAQRRLELLE--AELEELRAELARLEAELERLEARLDA-LREELDELEAQIR--------GNGGDR 339

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 159131891  164 VkrqfkifrETKENEIQDLLRAKRELESKLQRLQAQ 199
Cdd:COG4913   340 L--------EQLEREIERLERELEERERRRARLEAL 367
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 79-199 5.07e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 39.53  E-value: 5.07e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159131891  79 ELEYAAAEFERLKKEYEIFRV---SKNQELLSMGRREAKLDTENKRLRAELQALQKTYQKILREKEGALEAKYQAMERAV 155
Cdd:COG1196  261 ELAELEAELEELRLELEELELeleEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELE 340

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 159131891 156 TFEHDRDRVKRQFKIFRETKENEIQDLLRAKRELESKLQRLQAQ 199
Cdd:COG1196  341 ELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEEL 384
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
103-202 5.63e-03

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 39.23  E-value: 5.63e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159131891 103 QELLSMGRREAKLD---TEN----KRLRAELQALQKTYQKILREKEGALEAKYQAMERAV-TFEHDRDRVKRQFKIFREt 174
Cdd:COG3206  270 AQLAELEAELAELSaryTPNhpdvIALRAQIAALRAQLQQEAQRILASLEAELEALQAREaSLQAQLAQLEARLAELPE- 348

                         90       100       110
                 ....*....|....*....|....*....|..
gi 159131891 175 KENEIQDLLR----AKRELESKLQRLQAQGIQ 202
Cdd:COG3206  349 LEAELRRLERevevARELYESLLQRLEEARLA 380
PspA COG1842
Phage shock protein A [Transcription, Signal transduction mechanisms];
113-199 6.48e-03

Phage shock protein A [Transcription, Signal transduction mechanisms];


Pssm-ID: 441447 [Multi-domain]  Cd Length: 217  Bit Score: 37.88  E-value: 6.48e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159131891 113 AKLDTENKRLRAELQALQKTYQKILREKEGALE------AKyQAMERAVTFEHDRDRVKRQFKIFREtkenEIQDLLRAK 186
Cdd:COG1842   47 AQVIANQKRLERQLEELEAEAEKWEEKARLALEkgredlAR-EALERKAELEAQAEALEAQLAQLEE----QVEKLKEAL 121

                         90
                 ....*....|...
gi 159131891 187 RELESKLQRLQAQ 199
Cdd:COG1842  122 RQLESKLEELKAK 134
PRK04778 PRK04778
septation ring formation regulator EzrA; Provisional
 79-205 6.71e-03

septation ring formation regulator EzrA; Provisional


Pssm-ID: 179877 [Multi-domain]  Cd Length: 569  Bit Score: 39.05  E-value: 6.71e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159131891  79 ELEYAAAEFERLKKE----YEIFR--------VSKNQEllSMGRREAKLDTENKRLRAELQALQKTYQkiLREKEG---- 142
Cdd:PRK04778 276 DLDEAEEKNEEIQERidqlYDILErevkarkyVEKNSD--TLPDFLEHAKEQNKELKEEIDRVKQSYT--LNESELesvr 351

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 159131891 143 ALEAKYQAMERAvtFEHDRDRVKRQFKIFretkeNEIQDLLrakRELESKLQRLQAQGIQVFD 205
Cdd:PRK04778 352 QLEKQLESLEKQ--YDEITERIAEQEIAY-----SELQEEL---EEILKQLEEIEKEQEKLSE 404
DR0291 COG1579
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ...
 79-199 6.88e-03

Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];


Pssm-ID: 441187 [Multi-domain]  Cd Length: 236  Bit Score: 37.98  E-value: 6.88e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159131891  79 ELEYAAAEFERLKKEYEIFRVSKNQELLSMGRREAKLDTENKRLrAELQALQKT------YQKILREKEGA------LEA 146
Cdd:COG1579   32 ELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARI-KKYEEQLGNvrnnkeYEALQKEIESLkrrisdLED 110

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 159131891 147 KY-QAMERAVTFEHDRDRVKRQFKIFRETKENEIQDLLRAKRELESKLQRLQAQ 199
Cdd:COG1579  111 EIlELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAE 164
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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