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Conserved domains on  [gi|30387399|ref|NP_848228|]
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tail fiber protein [Salmonella phage epsilon15]

Protein Classification

right-handed parallel beta-helix repeat-containing protein( domain architecture ID 12131601)

right-handed parallel beta-helix repeat-containing protein that may share some similarity with pectate lyases, similar to Bacteroides thetaiotaomicron alpha-1,3-galactosidase B that removes both branched alpha-1,3-linked galactose residues of blood group B antigens and linear alpha-1,3-linked galactose structures

PubMed:  38767844

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PHA02515 super family cl42857
hypothetical protein; Provisional
 4-128 1.35e-15

hypothetical protein; Provisional


The actual alignment was detected with superfamily member PHA02515:

Pssm-ID: 107197 [Multi-domain]  Cd Length: 508  Bit Score: 80.98  E-value: 1.35e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30387399     4 STEVDHNDYTGNGVTTSFPYTFRIFKKSDLVVQVVDLNENITELILDTDYTVT---GAGGYTCGDVVLSSPLANGYQISI 80
Cdd:PHA02515    5 STDRVAGPYPCNGLTTQFPFDFKVFNTGEVVAILSDADGVESTLTLGTDYTVAlndNQDSNPGGTLTTLATYATGYKITL 84

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 30387399    81 SRELPVTQETDLRNQGKFFAEVHENAFDKLTMLIQQVRSWLSLALRKP 128
Cdd:PHA02515   85 TSEVPNTQPETLTNQGGFYPKVIEHALDRLVIQIQQLADKLSRTVQAP 132
NosD super family cl34609
Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion ...
 362-550 7.47e-10

Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion transport and metabolism];


The actual alignment was detected with superfamily member COG3420:

Pssm-ID: 442646 [Multi-domain]  Cd Length: 343  Bit Score: 61.86  E-value: 7.47e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30387399  362 NGNDCVL----DNVSINGFFAKGLHTSNADGSGvGIRDYGTRN-TISKCRVEYNKFGISLEG-KDGWVLGNYVSNhyrms 435
Cdd:COG3420   67 GGKGTVItitaDNVTVRGLTITGSGDSLTDDDA-GIYVRGADNaVIENNRIENNLFGIYLEGsDNNVIRNNTISG----- 140

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30387399  436 seakPWDDTSNYWDGIvgggeWLGVATGYLIDGNEFEDNgQSGIYA-GGNGGIFAKNRITNNH------------IHGNW 502
Cdd:COG3420  141 ----NRDLRADRGNGI-----HLWNSPGNVIEGNTISGG-RDGIYLeFSDNNVIRNNTIRNLRygihymysndnlVEGNT 210

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 30387399  503 NRGIDFGVVqrLANSDvyENIITDNIVHNNRAANIWLAGVRDSIINNN 550
Cdd:COG3420  211 FRDNGAGIA--LMYSK--GNTVRGNTILGNSGYGILLKESSDSVIEGN 254
 
Name Accession Description Interval E-value
PHA02515 PHA02515
hypothetical protein; Provisional
 4-128 1.35e-15

hypothetical protein; Provisional


Pssm-ID: 107197 [Multi-domain]  Cd Length: 508  Bit Score: 80.98  E-value: 1.35e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30387399     4 STEVDHNDYTGNGVTTSFPYTFRIFKKSDLVVQVVDLNENITELILDTDYTVT---GAGGYTCGDVVLSSPLANGYQISI 80
Cdd:PHA02515    5 STDRVAGPYPCNGLTTQFPFDFKVFNTGEVVAILSDADGVESTLTLGTDYTVAlndNQDSNPGGTLTTLATYATGYKITL 84

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 30387399    81 SRELPVTQETDLRNQGKFFAEVHENAFDKLTMLIQQVRSWLSLALRKP 128
Cdd:PHA02515   85 TSEVPNTQPETLTNQGGFYPKVIEHALDRLVIQIQQLADKLSRTVQAP 132
NosD COG3420
Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion ...
 362-550 7.47e-10

Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion transport and metabolism];


Pssm-ID: 442646 [Multi-domain]  Cd Length: 343  Bit Score: 61.86  E-value: 7.47e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30387399  362 NGNDCVL----DNVSINGFFAKGLHTSNADGSGvGIRDYGTRN-TISKCRVEYNKFGISLEG-KDGWVLGNYVSNhyrms 435
Cdd:COG3420   67 GGKGTVItitaDNVTVRGLTITGSGDSLTDDDA-GIYVRGADNaVIENNRIENNLFGIYLEGsDNNVIRNNTISG----- 140

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30387399  436 seakPWDDTSNYWDGIvgggeWLGVATGYLIDGNEFEDNgQSGIYA-GGNGGIFAKNRITNNH------------IHGNW 502
Cdd:COG3420  141 ----NRDLRADRGNGI-----HLWNSPGNVIEGNTISGG-RDGIYLeFSDNNVIRNNTIRNLRygihymysndnlVEGNT 210

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 30387399  503 NRGIDFGVVqrLANSDvyENIITDNIVHNNRAANIWLAGVRDSIINNN 550
Cdd:COG3420  211 FRDNGAGIA--LMYSK--GNTVRGNTILGNSGYGILLKESSDSVIEGN 254
Beta_helix pfam13229
Right handed beta helix region; This region contains a parallel beta helix region that shares ...
 450-623 1.02e-07

Right handed beta helix region; This region contains a parallel beta helix region that shares some similarity with Pectate lyases.


Pssm-ID: 463811 [Multi-domain]  Cd Length: 158  Bit Score: 52.41  E-value: 1.02e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30387399    450 GIVGGGEWLGVATGYLIDGNEFEDNGQSGIYAGGNGGifakNRITNNHIHGNWNRGIDFGVVQRlansdvyeNIITDNIV 529
Cdd:pfam13229   20 NNGGYGIYLRGSSNATIENNTITNNGGDGIEISGSSN----NTISNNTISNNGGGGIALRGSSN--------NLIENNTI 87

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30387399    530 HNNRAANIWLAGVRDSIINNNNswftddyrsmFAGNFDACVCLTlaDGGEKAAPTGNQVNGNrcktlesddqiSGFTLNI 609
Cdd:pfam13229   88 SNNGGAGIYLSDSSNNTIENNI----------IHNNGGSGIVIE--DSSNNVTISNNTVTNN-----------KGAGILI 144

                          170
                   ....*....|....
gi 30387399    610 TDTARGNQVRDNVL 623
Cdd:pfam13229  145 VGGSSNNTVENNTF 158
 
Name Accession Description Interval E-value
PHA02515 PHA02515
hypothetical protein; Provisional
 4-128 1.35e-15

hypothetical protein; Provisional


Pssm-ID: 107197 [Multi-domain]  Cd Length: 508  Bit Score: 80.98  E-value: 1.35e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30387399     4 STEVDHNDYTGNGVTTSFPYTFRIFKKSDLVVQVVDLNENITELILDTDYTVT---GAGGYTCGDVVLSSPLANGYQISI 80
Cdd:PHA02515    5 STDRVAGPYPCNGLTTQFPFDFKVFNTGEVVAILSDADGVESTLTLGTDYTVAlndNQDSNPGGTLTTLATYATGYKITL 84

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 30387399    81 SRELPVTQETDLRNQGKFFAEVHENAFDKLTMLIQQVRSWLSLALRKP 128
Cdd:PHA02515   85 TSEVPNTQPETLTNQGGFYPKVIEHALDRLVIQIQQLADKLSRTVQAP 132
NosD COG3420
Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion ...
 362-550 7.47e-10

Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion transport and metabolism];


Pssm-ID: 442646 [Multi-domain]  Cd Length: 343  Bit Score: 61.86  E-value: 7.47e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30387399  362 NGNDCVL----DNVSINGFFAKGLHTSNADGSGvGIRDYGTRN-TISKCRVEYNKFGISLEG-KDGWVLGNYVSNhyrms 435
Cdd:COG3420   67 GGKGTVItitaDNVTVRGLTITGSGDSLTDDDA-GIYVRGADNaVIENNRIENNLFGIYLEGsDNNVIRNNTISG----- 140

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30387399  436 seakPWDDTSNYWDGIvgggeWLGVATGYLIDGNEFEDNgQSGIYA-GGNGGIFAKNRITNNH------------IHGNW 502
Cdd:COG3420  141 ----NRDLRADRGNGI-----HLWNSPGNVIEGNTISGG-RDGIYLeFSDNNVIRNNTIRNLRygihymysndnlVEGNT 210

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 30387399  503 NRGIDFGVVqrLANSDvyENIITDNIVHNNRAANIWLAGVRDSIINNN 550
Cdd:COG3420  211 FRDNGAGIA--LMYSK--GNTVRGNTILGNSGYGILLKESSDSVIEGN 254
Beta_helix pfam13229
Right handed beta helix region; This region contains a parallel beta helix region that shares ...
 450-623 1.02e-07

Right handed beta helix region; This region contains a parallel beta helix region that shares some similarity with Pectate lyases.


Pssm-ID: 463811 [Multi-domain]  Cd Length: 158  Bit Score: 52.41  E-value: 1.02e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30387399    450 GIVGGGEWLGVATGYLIDGNEFEDNGQSGIYAGGNGGifakNRITNNHIHGNWNRGIDFGVVQRlansdvyeNIITDNIV 529
Cdd:pfam13229   20 NNGGYGIYLRGSSNATIENNTITNNGGDGIEISGSSN----NTISNNTISNNGGGGIALRGSSN--------NLIENNTI 87

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30387399    530 HNNRAANIWLAGVRDSIINNNNswftddyrsmFAGNFDACVCLTlaDGGEKAAPTGNQVNGNrcktlesddqiSGFTLNI 609
Cdd:pfam13229   88 SNNGGAGIYLSDSSNNTIENNI----------IHNNGGSGIVIE--DSSNNVTISNNTVTNN-----------KGAGILI 144

                          170
                   ....*....|....
gi 30387399    610 TDTARGNQVRDNVL 623
Cdd:pfam13229  145 VGGSSNNTVENNTF 158
NosD COG3420
Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion ...
 358-551 8.01e-06

Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion transport and metabolism];


Pssm-ID: 442646 [Multi-domain]  Cd Length: 343  Bit Score: 49.14  E-value: 8.01e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30387399  358 GVLLNG-NDCVLDNVSINGFfakglhTSNADGSGVGIR-DYGTRNTISKCRVEYNKFGISLEGKDGWVL-GNYVSN---- 430
Cdd:COG3420  122 GIYLEGsDNNVIRNNTISGN------RDLRADRGNGIHlWNSPGNVIEGNTISGGRDGIYLEFSDNNVIrNNTIRNlryg 195

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30387399  431 -HYRMSSEAKPWDDTSNYwdgiVGGGEWLGVATGYLIDGNEFEDNGQSGIYAggnggifakNRITNNHIHGNWNRGIDFG 509
Cdd:COG3420  196 iHYMYSNDNLVEGNTFRD----NGAGIALMYSKGNTVRGNTILGNSGYGILL---------KESSDSVIEGNTISGNGKG 262

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 30387399  510 VvqRLANSdvYENIITDNIVHNNRAANIWLAGVRDSIINNNN 551
Cdd:COG3420  263 I--FIYNS--NRNTIRGNLFAGNGIGIHLTAGSEGNRIYGNN 300
NosD pfam05048
Periplasmic copper-binding protein (NosD); NosD is a periplasmic protein which is thought to ...
 395-550 6.51e-03

Periplasmic copper-binding protein (NosD); NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme (NosZ). This region forms a parallel beta helix domain.


Pssm-ID: 428281 [Multi-domain]  Cd Length: 215  Bit Score: 39.32  E-value: 6.51e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30387399    395 DYGTRNTISKCRVEYNKFGISLEGKDgwvlGNYVSNhyrmsseakpwDDTSNYWDGIvgggeWLGVATGYLIDGNEFEDN 474
Cdd:pfam05048   47 DASNNNTITGNRISNLRYGIHLMNSN----DNTISD-----------NVFSGNTAGI-----ALMSSSNNTLENNTISGN 106

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 30387399    475 GQSGIYAGGNGGifakNRITNNHIHGNWNRGIdfgvvqRLANSDVyeNIITDN-IVHNNRAANIWLAGVRDSIINNN 550
Cdd:pfam05048  107 TNYGILLSDSSN----NTISNNTISNNNGKGI------FLYNSDY--NTITGNrITSNGIGIHFLAGSNGNTIYNNY 171
Beta_helix pfam13229
Right handed beta helix region; This region contains a parallel beta helix region that shares ...
 359-524 9.78e-03

Right handed beta helix region; This region contains a parallel beta helix region that shares some similarity with Pectate lyases.


Pssm-ID: 463811 [Multi-domain]  Cd Length: 158  Bit Score: 38.16  E-value: 9.78e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30387399    359 VLLNGNDCVLDNVSIngffakglhtSNADGSGVGIRdYGTRNTISKCRVEYNK-FGISL-EGKDGWVLGNYVSNHYRmss 436
Cdd:pfam13229   27 YLRGSSNATIENNTI----------TNNGGDGIEIS-GSSNNTISNNTISNNGgGGIALrGSSNNLIENNTISNNGG--- 92

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30387399    437 eakpwddtsnywDGIvgggeWLGVATGYLIDGNEFEDNGQSGIYAGGNGgifAKNRITNNHIHGNWNRGIDfgVVQRLAN 516
Cdd:pfam13229   93 ------------AGI-----YLSDSSNNTIENNIIHNNGGSGIVIEDSS---NNVTISNNTVTNNKGAGIL--IVGGSSN 150


                   ....*...
gi 30387399    517 SDVYENII 524
Cdd:pfam13229  151 NTVENNTF 158
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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