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Conserved domains on  [gi|42571113|ref|NP_973630|]
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cation exchanger 1 [Arabidopsis thaliana]

Protein Classification

calcium/proton exchanger( domain architecture ID 11489788)

calcium/proton exchanger translocates Ca(2+) and other metal ions into vacuoles using the proton gradient formed by H(+)-ATPase and H(+)-pyrophosphatase

Gene Ontology:  GO:0015369|GO:0006816|GO:0008324

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
caca2 TIGR00846
calcium/proton exchanger; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the ...
69-431 6.83e-166

calcium/proton exchanger; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA family are found ubiquitously, having been identified in animals, plants, yeast, archaea and widely divergent bacteria.All of the characterized animal proteins catalyze Ca2+:Na+ exchange although some also transport K+. The NCX1 plasma membrane protein exchanges 3 Na+ for 1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+ antiport but may also catalyze Na+:H+ antiport. All remaining well-characterized members of the family catalyze Ca2+:H+ exchange.This model is generated from the calcium ion/proton exchangers of the CacA family. [Transport and binding proteins, Cations and iron carrying compounds]


:

Pssm-ID: 273297 [Multi-domain]  Cd Length: 363  Bit Score: 472.33  E-value: 6.83e-166
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571113    69 VILGTKLAILFPAIPAAIICTYCGVSQPWIFGLSLLGLTPLAERVSFLTEQLAFYTGPTLGGLLNATCGNATELIIAILA 148
Cdd:TIGR00846   1 VLLGSWLNILLIFVPAAIILGHWGSSQTLIFLLNLLGILPLAARVSFHTEELAHRLGETLGGLLNATFGNAVELIVSIMA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571113   149 LTNNKVAVVKYSLLGSILSNLLLVLGTSLFCGGIANIRREQRFDRKQADVNFFLLLLGFLCHLLPLLVGYLKNGEASAAV 228
Cdd:TIGR00846  81 LGNGKVEVVRDSLLGSILSNLLLVLGLCLLLGGIANIRREQTFDRGAAQTNFALLLLAILSLLLPAALPAAKPHEKSDHF 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571113   229 LsDMQLSISRGFSIVMLISYIAYLVFQLWTHRQLFDAQEQED-EYDDDVEQETAVISFWSGFAWLVGMTLVIALLSEYVV 307
Cdd:TIGR00846 161 Q-DMILGLSRGTAIVSLILYGAFLVFQLWTHRQLFEAQEEEDsEVDDEVHEKPTVLSPWSAAAWLVGTTIAIILLADYLV 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571113   308 ATIEEASDKWNLSVSFISIILLPIVGNAAEHAGAVIFAFKNKLDISLGVALGSATQIGLFVVPLTIIVAWILGINMDLNF 387
Cdd:TIGR00846 240 DTIDDAVDSWGLSVAFIGLILAPIVGNAAEHVTAVKAALKNKLDLALGVALGSALQIILFVVPLVVLVAWMLGIPMDLNF 319
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....
gi 42571113   388 GPLETGCLAVSIIITAFTLQDGSSHYMKGLVLLLCYFIIAICFF 431
Cdd:TIGR00846 320 GTFETIVLALSLFLTTITLQDGRSNYLEGAVLLALYIIIAMAFF 363
 
Name Accession Description Interval E-value
caca2 TIGR00846
calcium/proton exchanger; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the ...
69-431 6.83e-166

calcium/proton exchanger; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA family are found ubiquitously, having been identified in animals, plants, yeast, archaea and widely divergent bacteria.All of the characterized animal proteins catalyze Ca2+:Na+ exchange although some also transport K+. The NCX1 plasma membrane protein exchanges 3 Na+ for 1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+ antiport but may also catalyze Na+:H+ antiport. All remaining well-characterized members of the family catalyze Ca2+:H+ exchange.This model is generated from the calcium ion/proton exchangers of the CacA family. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273297 [Multi-domain]  Cd Length: 363  Bit Score: 472.33  E-value: 6.83e-166
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571113    69 VILGTKLAILFPAIPAAIICTYCGVSQPWIFGLSLLGLTPLAERVSFLTEQLAFYTGPTLGGLLNATCGNATELIIAILA 148
Cdd:TIGR00846   1 VLLGSWLNILLIFVPAAIILGHWGSSQTLIFLLNLLGILPLAARVSFHTEELAHRLGETLGGLLNATFGNAVELIVSIMA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571113   149 LTNNKVAVVKYSLLGSILSNLLLVLGTSLFCGGIANIRREQRFDRKQADVNFFLLLLGFLCHLLPLLVGYLKNGEASAAV 228
Cdd:TIGR00846  81 LGNGKVEVVRDSLLGSILSNLLLVLGLCLLLGGIANIRREQTFDRGAAQTNFALLLLAILSLLLPAALPAAKPHEKSDHF 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571113   229 LsDMQLSISRGFSIVMLISYIAYLVFQLWTHRQLFDAQEQED-EYDDDVEQETAVISFWSGFAWLVGMTLVIALLSEYVV 307
Cdd:TIGR00846 161 Q-DMILGLSRGTAIVSLILYGAFLVFQLWTHRQLFEAQEEEDsEVDDEVHEKPTVLSPWSAAAWLVGTTIAIILLADYLV 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571113   308 ATIEEASDKWNLSVSFISIILLPIVGNAAEHAGAVIFAFKNKLDISLGVALGSATQIGLFVVPLTIIVAWILGINMDLNF 387
Cdd:TIGR00846 240 DTIDDAVDSWGLSVAFIGLILAPIVGNAAEHVTAVKAALKNKLDLALGVALGSALQIILFVVPLVVLVAWMLGIPMDLNF 319
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....
gi 42571113   388 GPLETGCLAVSIIITAFTLQDGSSHYMKGLVLLLCYFIIAICFF 431
Cdd:TIGR00846 320 GTFETIVLALSLFLTTITLQDGRSNYLEGAVLLALYIIIAMAFF 363
ChaA COG0387
Cation (Ca2+/Na+/K+)/H+ antiporter ChaA [Inorganic ion transport and metabolism];
75-432 3.18e-79

Cation (Ca2+/Na+/K+)/H+ antiporter ChaA [Inorganic ion transport and metabolism];


Pssm-ID: 440156 [Multi-domain]  Cd Length: 362  Bit Score: 250.85  E-value: 3.18e-79
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571113  75 LAILFP-AIPAAIICTYCGVSQPWIFGLSLLGLTPLAERVSFLTEQLAFYTGPTLGGLLNATCGNATELIIAILALT--N 151
Cdd:COG0387  11 LLLFVPiAALALFLLHGGRWGPVLVFILAALAIIPLAFAAVHHAEVLAHRLGEPFGGLLLATFGNAIEVILIISAMLagE 90
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571113 152 NKVAVVKYSLLGSILSNLLLVLGTSLFCGGIanIRREQRFDRKQADVNFFLLLLGFLCH-LLPLLVGYLKNGEASAAVLs 230
Cdd:COG0387  91 ELPTLVRDTIFGAIMINLNGVLGLSLLLGGL--RHKEQEFNLQGARAYLSVLIPLAVLAlVLPNFTTSTPGPTFSTAQL- 167
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571113 231 dmqlsisRGFSIVMLISYIAYLVFQLWTHRQLFDAQEQEDEYDDDVEQETAVISFWSGFAWLVGMTLVIALLSEYVVATI 310
Cdd:COG0387 168 -------IFVAIVLLVLYGLFLLFQTVTHRDYFLPEDEGEEDEDEHEEPPSKWSLLLSLGLLLVALVAVVLLSEILVGSI 240
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571113 311 EEASDKWNLSVSFISIILlPIVGNAAEHAGAVIFAFKNKLDISLGVALGSATQIGLFVVPLTIIVAWILGINMDLNFGPL 390
Cdd:COG0387 241 EEAVEALGLPEAFVGVII-AILVLAPEGLTAVRAARKNRLQLSLNIALGSALASIGLTIPALVLISLLTGQPLTLGFNPF 319
                       330       340       350       360
                ....*....|....*....|....*....|....*....|..
gi 42571113 391 ETGCLAVSIIITAFTLQDGSSHYMKGLVLLLCYFIIAICFFV 432
Cdd:COG0387 320 ELVLLALTVLVSNLTFSDGRTNWLEGAVHLALFAIYAFLFFF 361
Na_Ca_ex pfam01699
Sodium/calcium exchanger protein; This is a family of sodium/calcium exchanger integral ...
287-432 1.76e-13

Sodium/calcium exchanger protein; This is a family of sodium/calcium exchanger integral membrane proteins. This family covers the integral membrane regions of the proteins. Sodium/calcium exchangers regulate intracellular Ca2+ concentrations in many cells; cardiac myocytes, epithelial cells, neurons retinal rod photoreceptors and smooth muscle cells. Ca2+ is moved into or out of the cytosol depending on Na+ concentration. In humans and rats there are 3 isoforms; NCX1 NCX2 and NCX3.


Pssm-ID: 426387 [Multi-domain]  Cd Length: 149  Bit Score: 67.63  E-value: 1.76e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571113   287 SGFAWLVGMTLVIALLSEYVVATIEEASDKWNLSVSFISIILLPIVGNAAEHAGAVIFAFKNKLDISLGVALGSATQIGL 366
Cdd:pfam01699   1 LSLLLFILGLLLISVAADLLVDSAEVLARVLGISGTVLGLTILALGTSLPELVSSIIAALRGEPDLALGNVIGSNIFNIL 80
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 42571113   367 FVVPLTIIVAWIL--GINMDLNFGPLETGCLAVSIIITAFTLQD-GSSHYMKGLVLLLCYFIIAICFFV 432
Cdd:pfam01699  81 LVLGLSALIGPVKvdSLLLKLDLGVLLLVALLLLLLLLLLLLPLfGRLSRFEGLVLLLLYIVYLVFQIV 149
 
Name Accession Description Interval E-value
caca2 TIGR00846
calcium/proton exchanger; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the ...
69-431 6.83e-166

calcium/proton exchanger; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA family are found ubiquitously, having been identified in animals, plants, yeast, archaea and widely divergent bacteria.All of the characterized animal proteins catalyze Ca2+:Na+ exchange although some also transport K+. The NCX1 plasma membrane protein exchanges 3 Na+ for 1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+ antiport but may also catalyze Na+:H+ antiport. All remaining well-characterized members of the family catalyze Ca2+:H+ exchange.This model is generated from the calcium ion/proton exchangers of the CacA family. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273297 [Multi-domain]  Cd Length: 363  Bit Score: 472.33  E-value: 6.83e-166
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571113    69 VILGTKLAILFPAIPAAIICTYCGVSQPWIFGLSLLGLTPLAERVSFLTEQLAFYTGPTLGGLLNATCGNATELIIAILA 148
Cdd:TIGR00846   1 VLLGSWLNILLIFVPAAIILGHWGSSQTLIFLLNLLGILPLAARVSFHTEELAHRLGETLGGLLNATFGNAVELIVSIMA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571113   149 LTNNKVAVVKYSLLGSILSNLLLVLGTSLFCGGIANIRREQRFDRKQADVNFFLLLLGFLCHLLPLLVGYLKNGEASAAV 228
Cdd:TIGR00846  81 LGNGKVEVVRDSLLGSILSNLLLVLGLCLLLGGIANIRREQTFDRGAAQTNFALLLLAILSLLLPAALPAAKPHEKSDHF 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571113   229 LsDMQLSISRGFSIVMLISYIAYLVFQLWTHRQLFDAQEQED-EYDDDVEQETAVISFWSGFAWLVGMTLVIALLSEYVV 307
Cdd:TIGR00846 161 Q-DMILGLSRGTAIVSLILYGAFLVFQLWTHRQLFEAQEEEDsEVDDEVHEKPTVLSPWSAAAWLVGTTIAIILLADYLV 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571113   308 ATIEEASDKWNLSVSFISIILLPIVGNAAEHAGAVIFAFKNKLDISLGVALGSATQIGLFVVPLTIIVAWILGINMDLNF 387
Cdd:TIGR00846 240 DTIDDAVDSWGLSVAFIGLILAPIVGNAAEHVTAVKAALKNKLDLALGVALGSALQIILFVVPLVVLVAWMLGIPMDLNF 319
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....
gi 42571113   388 GPLETGCLAVSIIITAFTLQDGSSHYMKGLVLLLCYFIIAICFF 431
Cdd:TIGR00846 320 GTFETIVLALSLFLTTITLQDGRSNYLEGAVLLALYIIIAMAFF 363
ChaA COG0387
Cation (Ca2+/Na+/K+)/H+ antiporter ChaA [Inorganic ion transport and metabolism];
75-432 3.18e-79

Cation (Ca2+/Na+/K+)/H+ antiporter ChaA [Inorganic ion transport and metabolism];


Pssm-ID: 440156 [Multi-domain]  Cd Length: 362  Bit Score: 250.85  E-value: 3.18e-79
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571113  75 LAILFP-AIPAAIICTYCGVSQPWIFGLSLLGLTPLAERVSFLTEQLAFYTGPTLGGLLNATCGNATELIIAILALT--N 151
Cdd:COG0387  11 LLLFVPiAALALFLLHGGRWGPVLVFILAALAIIPLAFAAVHHAEVLAHRLGEPFGGLLLATFGNAIEVILIISAMLagE 90
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571113 152 NKVAVVKYSLLGSILSNLLLVLGTSLFCGGIanIRREQRFDRKQADVNFFLLLLGFLCH-LLPLLVGYLKNGEASAAVLs 230
Cdd:COG0387  91 ELPTLVRDTIFGAIMINLNGVLGLSLLLGGL--RHKEQEFNLQGARAYLSVLIPLAVLAlVLPNFTTSTPGPTFSTAQL- 167
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571113 231 dmqlsisRGFSIVMLISYIAYLVFQLWTHRQLFDAQEQEDEYDDDVEQETAVISFWSGFAWLVGMTLVIALLSEYVVATI 310
Cdd:COG0387 168 -------IFVAIVLLVLYGLFLLFQTVTHRDYFLPEDEGEEDEDEHEEPPSKWSLLLSLGLLLVALVAVVLLSEILVGSI 240
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571113 311 EEASDKWNLSVSFISIILlPIVGNAAEHAGAVIFAFKNKLDISLGVALGSATQIGLFVVPLTIIVAWILGINMDLNFGPL 390
Cdd:COG0387 241 EEAVEALGLPEAFVGVII-AILVLAPEGLTAVRAARKNRLQLSLNIALGSALASIGLTIPALVLISLLTGQPLTLGFNPF 319
                       330       340       350       360
                ....*....|....*....|....*....|....*....|..
gi 42571113 391 ETGCLAVSIIITAFTLQDGSSHYMKGLVLLLCYFIIAICFFV 432
Cdd:COG0387 320 ELVLLALTVLVSNLTFSDGRTNWLEGAVHLALFAIYAFLFFF 361
cax TIGR00378
calcium/proton exchanger (cax); [Transport and binding proteins, Cations and iron carrying ...
78-431 2.85e-77

calcium/proton exchanger (cax); [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273043 [Multi-domain]  Cd Length: 349  Bit Score: 245.15  E-value: 2.85e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571113    78 LFPAIPAAIICTYCGVSQPWIFGLSLLGLTPLAERVSFLTEQLAFYTGPTLGGLLNATCGNATELIIAILALTNNKVAVV 157
Cdd:TIGR00378   1 LLVFVPLSVIGSLMHWPSTVLFAVYCLAIIPLAAYMGRATEELAIIAGPRIGGLLNATFGNAVELIISIIALKEGLTGIV 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571113   158 KYSLLGSILSNLLLVLGTSLFCGGIAniRREQRFDRKQADVNFFLLLLGFLCHLLPLLVGYLKNGEASAAVLSdmqlsIS 237
Cdd:TIGR00378  81 LASLTGSVLGNLLLVAGLSFFVGGLK--YKRQEFNIHAARHNSSLLIFAIVAFLIPAAFEVFSVGMENASKLN-----LS 153
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571113   238 RGFSIVMLISYIAYLVFQLWTHRQLFDAQEQE-DEYDDDVEQET-AVISFWSGFAWLVGMTLVIALLSEYVVATIEEASD 315
Cdd:TIGR00378 154 IGISIVMILVYVLALYFKLGTHRGLYQPNNAEqTEEMEEIEREPeHSWSGKVATIVLLAATIVVAYISENLVGTFHSVAE 233
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571113   316 KWNLSVSFISIILLPIVGNAAEHAGAVIFAFKNKLDISLGVALGSATQIGLFVVPLTIIVAWILGINMDLNFGPLETGCL 395
Cdd:TIGR00378 234 SFGLSELFIGVIVVPIVGNAAEHATAVIVAMKDKMDLAVEVAVGSSLQIAMFVAPVLVIVGWFIPTPMPLNFTLFELVAM 313
                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 42571113   396 AVSIIITAFTLQDGSSHYMKGLVLLLCYFIIAICFF 431
Cdd:TIGR00378 314 VSAVLLMNAISNDGDSNWLEGATLLAAYVIMAIAFF 349
ECM27 COG0530
Ca2+/Na+ antiporter [Inorganic ion transport and metabolism];
110-425 1.42e-17

Ca2+/Na+ antiporter [Inorganic ion transport and metabolism];


Pssm-ID: 440296 [Multi-domain]  Cd Length: 293  Bit Score: 82.87  E-value: 1.42e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571113 110 AERVSFLTEQLAFYTG--PTLGGLLNATCGNAT-ELIIAILALTNNKVAVVKYSLLGSILSNLLLVLGTSLFCGGIA--- 183
Cdd:COG0530   1 ADLLVRGADALARRLGisPLVIGLTIVAFGTSLpELAVSVTAALDGSPDIAVGNVVGSNIANILLILGLAALIRPLAvdr 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571113 184 -NIRREqrfdrkqadvnffllllgflchlLPLLVGYlkngeASAAVLSDMQLSISRGFSIVMLISYIAYLVFQLWTHRQL 262
Cdd:COG0530  81 rVLRRD-----------------------LPFLLLA-----SLLLLALLLDGTLSRIDGVILLLLYVLYLYYLIRRARKE 132
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571113 263 FDAQEQEDEYDDDVEqetavISFWSGFAWLVGMTLVIALLSEYVVATIEEASDKWNLSVSFISIILLPIVGNAAEHAGAV 342
Cdd:COG0530 133 PAWEEVEEELEEKPK-----MSLWKALLLLVLGLALLVVGARLLVDGAVEIARALGVSELVIGLTIVAIGTSLPELATSI 207
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571113 343 IFAFKNKLDISLGVALGSATQIGLFVVPLTIIVAwilGINMDLNFGPLE-TGCLAVSIIITAFTLQDGSSHYMKGLVLLL 421
Cdd:COG0530 208 VAARKGEDDLAVGNIIGSNIFNILLVLGIGALIT---PIPVDPAVLSFDlPVMLAATLLLLGLLRTGGRIGRWEGLLLLA 284

                ....
gi 42571113 422 CYFI 425
Cdd:COG0530 285 LYLA 288
Na_Ca_ex pfam01699
Sodium/calcium exchanger protein; This is a family of sodium/calcium exchanger integral ...
287-432 1.76e-13

Sodium/calcium exchanger protein; This is a family of sodium/calcium exchanger integral membrane proteins. This family covers the integral membrane regions of the proteins. Sodium/calcium exchangers regulate intracellular Ca2+ concentrations in many cells; cardiac myocytes, epithelial cells, neurons retinal rod photoreceptors and smooth muscle cells. Ca2+ is moved into or out of the cytosol depending on Na+ concentration. In humans and rats there are 3 isoforms; NCX1 NCX2 and NCX3.


Pssm-ID: 426387 [Multi-domain]  Cd Length: 149  Bit Score: 67.63  E-value: 1.76e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571113   287 SGFAWLVGMTLVIALLSEYVVATIEEASDKWNLSVSFISIILLPIVGNAAEHAGAVIFAFKNKLDISLGVALGSATQIGL 366
Cdd:pfam01699   1 LSLLLFILGLLLISVAADLLVDSAEVLARVLGISGTVLGLTILALGTSLPELVSSIIAALRGEPDLALGNVIGSNIFNIL 80
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 42571113   367 FVVPLTIIVAWIL--GINMDLNFGPLETGCLAVSIIITAFTLQD-GSSHYMKGLVLLLCYFIIAICFFV 432
Cdd:pfam01699  81 LVLGLSALIGPVKvdSLLLKLDLGVLLLVALLLLLLLLLLLLPLfGRLSRFEGLVLLLLYIVYLVFQIV 149
Na_Ca_ex pfam01699
Sodium/calcium exchanger protein; This is a family of sodium/calcium exchanger integral ...
96-257 2.05e-10

Sodium/calcium exchanger protein; This is a family of sodium/calcium exchanger integral membrane proteins. This family covers the integral membrane regions of the proteins. Sodium/calcium exchangers regulate intracellular Ca2+ concentrations in many cells; cardiac myocytes, epithelial cells, neurons retinal rod photoreceptors and smooth muscle cells. Ca2+ is moved into or out of the cytosol depending on Na+ concentration. In humans and rats there are 3 isoforms; NCX1 NCX2 and NCX3.


Pssm-ID: 426387 [Multi-domain]  Cd Length: 149  Bit Score: 58.77  E-value: 2.05e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571113    96 PWIFGLSLLGLTPLAERVSFLTEQLAFYTG---PTLGGLLNATCGNATELIIAILALTNNKVAVVKYSLLGSILSNLLLV 172
Cdd:pfam01699   3 LLLFILGLLLISVAADLLVDSAEVLARVLGisgTVLGLTILALGTSLPELVSSIIAALRGEPDLALGNVIGSNIFNILLV 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571113   173 LGTSLFCGGIANIRREQRFDrkqadvnffllllgflCHLLPLLVGYLknGEASAAVLSDMQLSISRGFSIVMLISYIAYL 252
Cdd:pfam01699  83 LGLSALIGPVKVDSLLLKLD----------------LGVLLLVALLL--LLLLLLLLLPLFGRLSRFEGLVLLLLYIVYL 144

                  ....*
gi 42571113   253 VFQLW 257
Cdd:pfam01699 145 VFQIV 149
TIGR00367 TIGR00367
K+-dependent Na+/Ca+ exchanger related-protein; This model models a family of bacterial and ...
236-425 5.48e-03

K+-dependent Na+/Ca+ exchanger related-protein; This model models a family of bacterial and archaeal proteins that is homologous, except for lacking a central region of ~ 250 amino acids and an N-terminal region of > 100 residues, to a functionally proven potassium-dependent sodium-calcium exchanger of the rat. [Unknown function, General]


Pssm-ID: 273039 [Multi-domain]  Cd Length: 307  Bit Score: 38.84  E-value: 5.48e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571113   236 ISRGFSIVMLISYIAYLVFQLWTHRQLFDAQEQEDEYDDDVEQETAVISFwsgfAWLVGMTLVIALLSEYVVATIEEASD 315
Cdd:TIGR00367 123 ISRIDGVVLLILYIVYLLFLVKNERWVKYDTYTEENLDENNRRPQIFFSL----VLLIIGLIGLVVGSRLLVDGAVKIAE 198
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571113   316 KWNLSVSFISIILLPIVGNAAEHAGAVIFAFKNKLDISLGVALGSATQIGLFVVPLTIIVAWILGINMDLNF-GPLetgC 394
Cdd:TIGR00367 199 ILGISEKIIGLTLLAIGTSLPELVVSLAAARKGLGDIAVGNVIGSNIFNILVGLGVPSLFMPIPVEPLAYNLdAPV---M 275
                         170       180       190
                  ....*....|....*....|....*....|.
gi 42571113   395 LAVSIIITAFTLQDGSSHYMKGLVLLLCYFI 425
Cdd:TIGR00367 276 VIVTLLLMLFFKTSMKLGRWEGILLLALYIA 306
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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