|
Name |
Accession |
Description |
Interval |
E-value |
| R3H_encore_like |
cd02642 |
R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the ... |
448-508 |
1.54e-23 |
|
R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H domain is a potential regulator of DBF1 activity in stress responses. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
:
Pssm-ID: 100071 Cd Length: 63 Bit Score: 95.36 E-value: 1.54e-23
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 45552931 448 DRNILLKIEKDLIDFVQENSRgCEYRFPPASSYNRMLIHRTAAFFGMEHNVDTETQQCVIV 508
Cdd:cd02642 1 DRLFVLKLEKDLLAFIKDSTR-QSLELPPMNSYYRLLAHRVAQYYGLDHNVDNSGGKCVIV 60
|
|
| SUZ |
pfam12752 |
SUZ domain; The SUZ domain is a conserved RNA-binding domain found in eukaryotes and enriched ... |
530-578 |
3.11e-08 |
|
SUZ domain; The SUZ domain is a conserved RNA-binding domain found in eukaryotes and enriched in positively charged amino acids. It was first characterized in the C.elegans protein Szy-20 where it has been shown to bind RNA and allow their localization to the centrosome. Warning- the domain has a compositionally biased character.
:
Pssm-ID: 463689 [Multi-domain] Cd Length: 56 Bit Score: 51.55 E-value: 3.11e-08
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 45552931 530 RKSILKRDTHSFDEVRQ-SPYLCPLSLDRKAKSFEEREEDYDRARSRIFS 578
Cdd:pfam12752 4 KMKILRRPSSGSSSSSSaGSSGASSSSGSDSKTLEEREAEYAEARARIFG 53
|
|
| PRK10263 super family |
cl35903 |
DNA translocase FtsK; Provisional |
984-1185 |
1.23e-04 |
|
DNA translocase FtsK; Provisional
The actual alignment was detected with superfamily member PRK10263:
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 47.39 E-value: 1.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45552931 984 HTTTTPNGAAPyCATTYQQgpdgsIYAVPQGMVYAAYPQPGVGTAGGASQPLFQLTTSSHPPAQTIFASPEAGAEIPG-G 1062
Cdd:PRK10263 314 APITEPVAVAA-AATTATQ-----SWAAPVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQTGEPVIAPAPEGYPQQSQyA 387
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45552931 1063 TYMIPVFDPAQQPREGLIPAQAIYQTGPGGPGATTVMPmATAAAYPTAQFATAAPNGAPIYQAPliySSEPGGGAQLQQL 1142
Cdd:PRK10263 388 QPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAP-EQPAQQPYYAPAPEQPVAGNAWQAE---EQQSTFAPQSTYQ 463
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 45552931 1143 PMAPYPIQYSYPYYHPISYYVPQQAVAAAPMVASQPQVGQAPM 1185
Cdd:PRK10263 464 TEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPARPPL 506
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| R3H_encore_like |
cd02642 |
R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the ... |
448-508 |
1.54e-23 |
|
R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H domain is a potential regulator of DBF1 activity in stress responses. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Pssm-ID: 100071 Cd Length: 63 Bit Score: 95.36 E-value: 1.54e-23
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 45552931 448 DRNILLKIEKDLIDFVQENSRgCEYRFPPASSYNRMLIHRTAAFFGMEHNVDTETQQCVIV 508
Cdd:cd02642 1 DRLFVLKLEKDLLAFIKDSTR-QSLELPPMNSYYRLLAHRVAQYYGLDHNVDNSGGKCVIV 60
|
|
| R3H |
pfam01424 |
R3H domain; The name of the R3H domain comes from the characteriztic spacing of the most ... |
452-508 |
2.79e-11 |
|
R3H domain; The name of the R3H domain comes from the characteriztic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to be binding ssDNA.
Pssm-ID: 460206 Cd Length: 60 Bit Score: 60.20 E-value: 2.79e-11
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 45552931 452 LLKIEKDLIDFVQENSRgcEYRFPPASSYNRMLIHRTAAFFGMEHN-VDTETQQCVIV 508
Cdd:pfam01424 3 LEQLAEKLAEFVKDTGK--SLELPPMSSYERRIIHELAQKYGLESEsEGEEPNRRVVV 58
|
|
| R3H |
smart00393 |
Putative single-stranded nucleic acids-binding domain; |
433-508 |
3.17e-10 |
|
Putative single-stranded nucleic acids-binding domain;
Pssm-ID: 214647 Cd Length: 79 Bit Score: 58.08 E-value: 3.17e-10
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 45552931 433 DLLVFFRDTLNKNPKDRNILLKIEKDLIDFVqeNSRGCEYRFPPASSYNRMLIHRTAAFFGMEHN-VDTETQQCVIV 508
Cdd:smart00393 2 DFLPVTLDALSYRPRRREELIELELEIARFV--KSTKESVELPPMNSYERKIVHELAEKYGLESEsFGEGPKRRVVI 76
|
|
| SUZ |
pfam12752 |
SUZ domain; The SUZ domain is a conserved RNA-binding domain found in eukaryotes and enriched ... |
530-578 |
3.11e-08 |
|
SUZ domain; The SUZ domain is a conserved RNA-binding domain found in eukaryotes and enriched in positively charged amino acids. It was first characterized in the C.elegans protein Szy-20 where it has been shown to bind RNA and allow their localization to the centrosome. Warning- the domain has a compositionally biased character.
Pssm-ID: 463689 [Multi-domain] Cd Length: 56 Bit Score: 51.55 E-value: 3.11e-08
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 45552931 530 RKSILKRDTHSFDEVRQ-SPYLCPLSLDRKAKSFEEREEDYDRARSRIFS 578
Cdd:pfam12752 4 KMKILRRPSSGSSSSSSaGSSGASSSSGSDSKTLEEREAEYAEARARIFG 53
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
984-1185 |
1.23e-04 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 47.39 E-value: 1.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45552931 984 HTTTTPNGAAPyCATTYQQgpdgsIYAVPQGMVYAAYPQPGVGTAGGASQPLFQLTTSSHPPAQTIFASPEAGAEIPG-G 1062
Cdd:PRK10263 314 APITEPVAVAA-AATTATQ-----SWAAPVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQTGEPVIAPAPEGYPQQSQyA 387
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45552931 1063 TYMIPVFDPAQQPREGLIPAQAIYQTGPGGPGATTVMPmATAAAYPTAQFATAAPNGAPIYQAPliySSEPGGGAQLQQL 1142
Cdd:PRK10263 388 QPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAP-EQPAQQPYYAPAPEQPVAGNAWQAE---EQQSTFAPQSTYQ 463
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 45552931 1143 PMAPYPIQYSYPYYHPISYYVPQQAVAAAPMVASQPQVGQAPM 1185
Cdd:PRK10263 464 TEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPARPPL 506
|
|
| Herpes_BLLF1 |
pfam05109 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
965-1320 |
3.23e-03 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 42.60 E-value: 3.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45552931 965 TTTWTYTQSYQAPDGSTVFHTTTTPNGAAPYCATtyqqGPDGSIYaVPQGMVYAAYPQPGVGTAGgasqplfqlTTSSHP 1044
Cdd:pfam05109 413 TTTTHKVIFSKAPESTTTSPTLNTTGFAAPNTTT----GLPSSTH-VPTNLTAPASTGPTVSTAD---------VTSPTP 478
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45552931 1045 PAQTIFASPeagaeipggtymipvFDPAQQPREGLIPAQAIYQTGPGGpGATTVMPMATAaayPTAQFATAAPNGApiyq 1124
Cdd:pfam05109 479 AGTTSGASP---------------VTPSPSPRDNGTESKAPDMTSPTS-AVTTPTPNATS---PTPAVTTPTPNAT---- 535
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45552931 1125 APLIYSSEPGGgAQLQQLPMAPYPI--------QYSYPYYHPISyyvPQQAVAAAPMVASQPQVGQAPMQQQAPHTGAGT 1196
Cdd:pfam05109 536 SPTLGKTSPTS-AVTTPTPNATSPTpavttptpNATIPTLGKTS---PTSAVTTPTPNATSPTVGETSPQANTTNHTLGG 611
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45552931 1197 TTGPPTVVSvsgqqhhqphQQHHQQQQHSSNGSVVTSSAYGTRVKRtPGGGSIHYNPSYTPSSVAHAG--GAHHPSAGSa 1274
Cdd:pfam05109 612 TSSTPVVTS----------PPKNATSAVTTGQHNITSSSTSSMSLR-PSSISETLSPSTSDNSTSHMPllTSAHPTGGE- 679
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 45552931 1275 QIIAAPAASTTTYHAlpTLTLAHGGPATGTDLSGAGGAHVYALPAQ 1320
Cdd:pfam05109 680 NITQVTPASTSTHHV--STSSPAPRPGTTSQASGPGNSSTSTKPGE 723
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| R3H_encore_like |
cd02642 |
R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the ... |
448-508 |
1.54e-23 |
|
R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H domain is a potential regulator of DBF1 activity in stress responses. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Pssm-ID: 100071 Cd Length: 63 Bit Score: 95.36 E-value: 1.54e-23
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 45552931 448 DRNILLKIEKDLIDFVQENSRgCEYRFPPASSYNRMLIHRTAAFFGMEHNVDTETQQCVIV 508
Cdd:cd02642 1 DRLFVLKLEKDLLAFIKDSTR-QSLELPPMNSYYRLLAHRVAQYYGLDHNVDNSGGKCVIV 60
|
|
| R3H |
pfam01424 |
R3H domain; The name of the R3H domain comes from the characteriztic spacing of the most ... |
452-508 |
2.79e-11 |
|
R3H domain; The name of the R3H domain comes from the characteriztic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to be binding ssDNA.
Pssm-ID: 460206 Cd Length: 60 Bit Score: 60.20 E-value: 2.79e-11
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 45552931 452 LLKIEKDLIDFVQENSRgcEYRFPPASSYNRMLIHRTAAFFGMEHN-VDTETQQCVIV 508
Cdd:pfam01424 3 LEQLAEKLAEFVKDTGK--SLELPPMSSYERRIIHELAQKYGLESEsEGEEPNRRVVV 58
|
|
| R3H |
smart00393 |
Putative single-stranded nucleic acids-binding domain; |
433-508 |
3.17e-10 |
|
Putative single-stranded nucleic acids-binding domain;
Pssm-ID: 214647 Cd Length: 79 Bit Score: 58.08 E-value: 3.17e-10
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 45552931 433 DLLVFFRDTLNKNPKDRNILLKIEKDLIDFVqeNSRGCEYRFPPASSYNRMLIHRTAAFFGMEHN-VDTETQQCVIV 508
Cdd:smart00393 2 DFLPVTLDALSYRPRRREELIELELEIARFV--KSTKESVELPPMNSYERKIVHELAEKYGLESEsFGEGPKRRVVI 76
|
|
| R3H |
cd02325 |
R3H domain. The name of the R3H domain comes from the characteristic spacing of the most ... |
452-508 |
5.03e-10 |
|
R3H domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. R3H domains are found in proteins together with ATPase domains, SF1 helicase domains, SF2 DEAH helicase domains, Cys-rich repeats, ring-type zinc fingers, and KH domains. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Pssm-ID: 100064 Cd Length: 59 Bit Score: 56.85 E-value: 5.03e-10
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 45552931 452 LLKIEKDLIDFVQeNSRGCEYRFPPASSYNRMLIHRTAAFFGMEHN-VDTETQQCVIV 508
Cdd:cd02325 1 REEREEELEAFAK-DAAGKSLELPPMNSYERKLIHDLAEYYGLKSEsEGEGPNRRVVI 57
|
|
| SUZ |
pfam12752 |
SUZ domain; The SUZ domain is a conserved RNA-binding domain found in eukaryotes and enriched ... |
530-578 |
3.11e-08 |
|
SUZ domain; The SUZ domain is a conserved RNA-binding domain found in eukaryotes and enriched in positively charged amino acids. It was first characterized in the C.elegans protein Szy-20 where it has been shown to bind RNA and allow their localization to the centrosome. Warning- the domain has a compositionally biased character.
Pssm-ID: 463689 [Multi-domain] Cd Length: 56 Bit Score: 51.55 E-value: 3.11e-08
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 45552931 530 RKSILKRDTHSFDEVRQ-SPYLCPLSLDRKAKSFEEREEDYDRARSRIFS 578
Cdd:pfam12752 4 KMKILRRPSSGSSSSSSaGSSGASSSSGSDSKTLEEREAEYAEARARIFG 53
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
984-1185 |
1.23e-04 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 47.39 E-value: 1.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45552931 984 HTTTTPNGAAPyCATTYQQgpdgsIYAVPQGMVYAAYPQPGVGTAGGASQPLFQLTTSSHPPAQTIFASPEAGAEIPG-G 1062
Cdd:PRK10263 314 APITEPVAVAA-AATTATQ-----SWAAPVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQTGEPVIAPAPEGYPQQSQyA 387
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45552931 1063 TYMIPVFDPAQQPREGLIPAQAIYQTGPGGPGATTVMPmATAAAYPTAQFATAAPNGAPIYQAPliySSEPGGGAQLQQL 1142
Cdd:PRK10263 388 QPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAP-EQPAQQPYYAPAPEQPVAGNAWQAE---EQQSTFAPQSTYQ 463
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 45552931 1143 PMAPYPIQYSYPYYHPISYYVPQQAVAAAPMVASQPQVGQAPM 1185
Cdd:PRK10263 464 TEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPARPPL 506
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
1019-1201 |
1.02e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 44.10 E-value: 1.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45552931 1019 AYPQPGVGTAGGASQPLFQLTTSSHPPAQTIFASPEAGAEIPGGTYMIPVFDPAQQP-REGLIPAQAIYQTGPGGPGATT 1097
Cdd:PRK12323 372 AGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPaPEALAAARQASARGPGGAPAPA 451
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45552931 1098 VMPMATAAAYPTAQFATAAPNGAPIYQAPLIYSSEPGGGAQLQQLP-----------MAPYPIQYSYPYYHPISYYVPQQ 1166
Cdd:PRK12323 452 PAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPpweelppefasPAPAQPDAAPAGWVAESIPDPAT 531
|
170 180 190
....*....|....*....|....*....|....*
gi 45552931 1167 AVAAAPMVASQPQVGQAPMQQQAPHTGAGTTTGPP 1201
Cdd:PRK12323 532 ADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPP 566
|
|
| R3H_NF-X1 |
cd02643 |
R3H domain of the X1 box binding protein (NF-X1) and related proteins. Human NF-X1 is a ... |
439-508 |
1.16e-03 |
|
R3H domain of the X1 box binding protein (NF-X1) and related proteins. Human NF-X1 is a transcription factor that regulates the expression of class II major histocompatibility complex (MHC) genes. The Drosophila homolog shuttle craft (STC) has been shown to be a DNA- or RNA-binding protein required for proper axon guidance in the central nervous system and, the yeast homolog FAP1 encodes a dosage suppressor of rapamycin toxicity. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Pssm-ID: 100072 Cd Length: 74 Bit Score: 39.26 E-value: 1.16e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 45552931 439 RDTLNKNPKDrniLLKIEKDLIDFVQENSRGCE----YRFPPASSYNRMLIHRTAAFFGMEH-NVDTETQQCVIV 508
Cdd:cd02643 1 KNMAKKDPKF---VKDVEKDLIELVESVNKGKQtsrsHSFPPMNREKRRIVHELAEHFGIESvSYDQEPKRNVVA 72
|
|
| PHA03378 |
PHA03378 |
EBNA-3B; Provisional |
1039-1274 |
1.25e-03 |
|
EBNA-3B; Provisional
Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 43.90 E-value: 1.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45552931 1039 TTSSHPPAQT--------IFASPEAGAEIPGGTYMIPVF-DPAQQPREGLIPAQAIYQTGPGGP------GATTVMP--- 1100
Cdd:PHA03378 610 TTQSHIPETSaprqwpmpLRPIPMRPLRMQPITFNVLVFpTPHQPPQVEITPYKPTWTQIGHIPyqpsptGANTMLPiqw 689
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45552931 1101 ----MATAAAYPTAQFATAAPNGAPIYQAPLIYSSEPGGGAQLQQLPMAPYPIQYSYPYYHPISYYVPQ---------QA 1167
Cdd:PHA03378 690 apgtMQPPPRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAaapgrarppAA 769
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45552931 1168 VAAAPMVASQPQVGQAPMQQ-QAPHTGAGTTTGPPTVVSVSGQQHHQPHQQHHQQQQHSSNGSVVT---SSAYGTRVKR- 1242
Cdd:PHA03378 770 APGAPTPQPPPQAPPAPQQRpRGAPTPQPPPQAGPTSMQLMPRAAPGQQGPTKQILRQLLTGGVKRgrpSLKKPAALERq 849
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 45552931 1243 -------TPGGGS--------IHYNPSYTPSSVAHAGGAHHPSAGSA 1274
Cdd:PHA03378 850 aaagptpSPGSGTsdkivqapVFYPPVLQPIQVMRQLGSVRAAAAST 896
|
|
| Herpes_BLLF1 |
pfam05109 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
965-1320 |
3.23e-03 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 42.60 E-value: 3.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45552931 965 TTTWTYTQSYQAPDGSTVFHTTTTPNGAAPYCATtyqqGPDGSIYaVPQGMVYAAYPQPGVGTAGgasqplfqlTTSSHP 1044
Cdd:pfam05109 413 TTTTHKVIFSKAPESTTTSPTLNTTGFAAPNTTT----GLPSSTH-VPTNLTAPASTGPTVSTAD---------VTSPTP 478
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45552931 1045 PAQTIFASPeagaeipggtymipvFDPAQQPREGLIPAQAIYQTGPGGpGATTVMPMATAaayPTAQFATAAPNGApiyq 1124
Cdd:pfam05109 479 AGTTSGASP---------------VTPSPSPRDNGTESKAPDMTSPTS-AVTTPTPNATS---PTPAVTTPTPNAT---- 535
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45552931 1125 APLIYSSEPGGgAQLQQLPMAPYPI--------QYSYPYYHPISyyvPQQAVAAAPMVASQPQVGQAPMQQQAPHTGAGT 1196
Cdd:pfam05109 536 SPTLGKTSPTS-AVTTPTPNATSPTpavttptpNATIPTLGKTS---PTSAVTTPTPNATSPTVGETSPQANTTNHTLGG 611
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45552931 1197 TTGPPTVVSvsgqqhhqphQQHHQQQQHSSNGSVVTSSAYGTRVKRtPGGGSIHYNPSYTPSSVAHAG--GAHHPSAGSa 1274
Cdd:pfam05109 612 TSSTPVVTS----------PPKNATSAVTTGQHNITSSSTSSMSLR-PSSISETLSPSTSDNSTSHMPllTSAHPTGGE- 679
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 45552931 1275 QIIAAPAASTTTYHAlpTLTLAHGGPATGTDLSGAGGAHVYALPAQ 1320
Cdd:pfam05109 680 NITQVTPASTSTHHV--STSSPAPRPGTTSQASGPGNSSTSTKPGE 723
|
|
| |
