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Conserved domains on  [gi|74626869|sp|O74544|]
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RecName: Full=GTP-binding protein gtr2

Protein Classification

GTR/RAG family Ras-related GTP-binding protein( domain architecture ID 10183657)

GTR/RAG family Ras-related GTP-binding protein similar to Homo sapiens RagC, a GTPase involved in activation of the TORC1 signaling pathway, which promotes growth and represses autophagy in nutrient-rich conditions

CATH:  3.40.50.300
EC:  3.6.5.-
Gene Ontology:  GO:0005525|GO:0003924
SCOP:  4005007

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
RagC_like cd11385
Rag GTPase, subfamily of Ras-related GTPases, includes Ras-related GTP-binding proteins C and ...
5-177 8.18e-110

Rag GTPase, subfamily of Ras-related GTPases, includes Ras-related GTP-binding proteins C and D; RagC and RagD are closely related Rag GTPases (ras-related GTP-binding protein C and D) that constitute a unique subgroup of the Ras superfamily, and are functional homologs of Saccharomyces cerevisiae Gtr2. These domains form heterodimers with RagA or RagB, and similarly, Gtr2 dimerizes with Gtr1 in order to function. They play an essential role in regulating amino acid-induced target of rapamycin complex 1 (TORC1) kinase signaling, exocytic cargo sorting at endosomes, and epigenetic control of gene expression. In response to amino acids, the Rag GTPases guide the TORC1 complex to activate the platform containing Rheb proto-oncogene by driving the relocalization of mTORC1 from discrete locations in the cytoplasm to a late endosomal and/or lysosomal compartment that is Rheb-enriched and contains Rab-7.


:

Pssm-ID: 206745 [Multi-domain]  Cd Length: 175  Bit Score: 316.09  E-value: 8.18e-110
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74626869   5 KIILMGLRRSGKSSIQKVVFYKMPPNETLFLESTSKLTQDHIS--SFIDFSVWDFPGQVDVFDAAFDFESIFTQVGALIF 82
Cdd:cd11385   1 RILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKITKDDISnsSFVNFQIWDFPGQLDPFDPTLDPEMIFSGCGALVF 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74626869  83 VIDAQDDYLDALARLHVTVARVVTINPNICIEVFIHKVDGLSDEFKIDTQRDIQQRTQDELADIGLENVPISFHLTSIFD 162
Cdd:cd11385  81 VIDAQDDYDEAIARLVETVTKAYKVNPNINFEVFIHKVDGLSEDHKIETQRDIQQRVTDELADAGLEDVQISFYLTSIYD 160
                       170
                ....*....|....*
gi 74626869 163 HSIFEAFSRVIQKLI 177
Cdd:cd11385 161 HSIFEAFSKVVQKLI 175
 
Name Accession Description Interval E-value
RagC_like cd11385
Rag GTPase, subfamily of Ras-related GTPases, includes Ras-related GTP-binding proteins C and ...
5-177 8.18e-110

Rag GTPase, subfamily of Ras-related GTPases, includes Ras-related GTP-binding proteins C and D; RagC and RagD are closely related Rag GTPases (ras-related GTP-binding protein C and D) that constitute a unique subgroup of the Ras superfamily, and are functional homologs of Saccharomyces cerevisiae Gtr2. These domains form heterodimers with RagA or RagB, and similarly, Gtr2 dimerizes with Gtr1 in order to function. They play an essential role in regulating amino acid-induced target of rapamycin complex 1 (TORC1) kinase signaling, exocytic cargo sorting at endosomes, and epigenetic control of gene expression. In response to amino acids, the Rag GTPases guide the TORC1 complex to activate the platform containing Rheb proto-oncogene by driving the relocalization of mTORC1 from discrete locations in the cytoplasm to a late endosomal and/or lysosomal compartment that is Rheb-enriched and contains Rab-7.


Pssm-ID: 206745 [Multi-domain]  Cd Length: 175  Bit Score: 316.09  E-value: 8.18e-110
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74626869   5 KIILMGLRRSGKSSIQKVVFYKMPPNETLFLESTSKLTQDHIS--SFIDFSVWDFPGQVDVFDAAFDFESIFTQVGALIF 82
Cdd:cd11385   1 RILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKITKDDISnsSFVNFQIWDFPGQLDPFDPTLDPEMIFSGCGALVF 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74626869  83 VIDAQDDYLDALARLHVTVARVVTINPNICIEVFIHKVDGLSDEFKIDTQRDIQQRTQDELADIGLENVPISFHLTSIFD 162
Cdd:cd11385  81 VIDAQDDYDEAIARLVETVTKAYKVNPNINFEVFIHKVDGLSEDHKIETQRDIQQRVTDELADAGLEDVQISFYLTSIYD 160
                       170
                ....*....|....*
gi 74626869 163 HSIFEAFSRVIQKLI 177
Cdd:cd11385 161 HSIFEAFSKVVQKLI 175
Gtr1_RagA pfam04670
Gtr1/RagA G protein conserved region; GTR1 was first identified in S. cerevisiae as a ...
5-229 2.47e-107

Gtr1/RagA G protein conserved region; GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologs of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B.


Pssm-ID: 398377 [Multi-domain]  Cd Length: 231  Bit Score: 311.82  E-value: 2.47e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74626869     5 KIILMGLRRSGKSSIQKVVFYKMPPNETLFLESTSKLTQDHI--SSFIDFSVWDFPGQVDVFDAAF--DFESIFTQVGAL 80
Cdd:pfam04670   1 KVLLMGLSGSGKSSMRSVIFSNYSPRDTLRLGATIDVEHSHVrfLGNLVLNLWDCGGQDDFFDNYLtfQKEHIFSNVGVL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74626869    81 IFVIDAQ-DDYLDALARLHVTVARVVTINPNICIEVFIHKVDGLSDEFKIDTQRDIQQRTQDELADIGLEnVPISFHLTS 159
Cdd:pfam04670  81 IYVFDVQsREYEEDLARLKETIEALYQYSPDAKVFVLIHKMDLIQEDHREEIFRDRKQEIREESEDLGLE-LDLSFFLTS 159
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 74626869   160 IFDHSIFEAFSRVIQKLIPQLPTLENLLNIFCSNSLVEKAYLFDVLSKIYVATDSSP--VDVQSYEICSDFI 229
Cdd:pfam04670 160 IWDESLYKAWSSIVQKLIPNLPTLENLLKVFCSNSDADEVFLFERTTFLVIATDSRSpvDDMQRYEKCSDII 231
Gem1 COG1100
GTPase SAR1 family domain [General function prediction only];
1-154 1.26e-05

GTPase SAR1 family domain [General function prediction only];


Pssm-ID: 440717 [Multi-domain]  Cd Length: 177  Bit Score: 44.97  E-value: 1.26e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74626869   1 MKPRKIILMGLRRSGKSS-----IQKVVFYKM--PPNETLFleSTSKLTQDHISsfIDFSVWDFPGQVDVFDAAFDFESI 73
Cdd:COG1100   1 MGEKKIVVVGTGGVGKTSlvnrlVGDIFSLEKylSTNGVTI--DKKELKLDGLD--VDLVIWDTPGQDEFRETRQFYARQ 76
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74626869  74 FTQVGALIFVIDA-QDDYLDALARLHVTVARvvtINPNICIEVFIHKVDgLSDEFKIDTQRDIQQRTQDelaDIGLENVP 152
Cdd:COG1100  77 LTGASLYLFVVDGtREETLQSLYELLESLRR---LGKKSPIILVLNKID-LYDEEEIEDEERLKEALSE---DNIVEVVA 149

                ..
gi 74626869 153 IS 154
Cdd:COG1100 150 TS 151
 
Name Accession Description Interval E-value
RagC_like cd11385
Rag GTPase, subfamily of Ras-related GTPases, includes Ras-related GTP-binding proteins C and ...
5-177 8.18e-110

Rag GTPase, subfamily of Ras-related GTPases, includes Ras-related GTP-binding proteins C and D; RagC and RagD are closely related Rag GTPases (ras-related GTP-binding protein C and D) that constitute a unique subgroup of the Ras superfamily, and are functional homologs of Saccharomyces cerevisiae Gtr2. These domains form heterodimers with RagA or RagB, and similarly, Gtr2 dimerizes with Gtr1 in order to function. They play an essential role in regulating amino acid-induced target of rapamycin complex 1 (TORC1) kinase signaling, exocytic cargo sorting at endosomes, and epigenetic control of gene expression. In response to amino acids, the Rag GTPases guide the TORC1 complex to activate the platform containing Rheb proto-oncogene by driving the relocalization of mTORC1 from discrete locations in the cytoplasm to a late endosomal and/or lysosomal compartment that is Rheb-enriched and contains Rab-7.


Pssm-ID: 206745 [Multi-domain]  Cd Length: 175  Bit Score: 316.09  E-value: 8.18e-110
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74626869   5 KIILMGLRRSGKSSIQKVVFYKMPPNETLFLESTSKLTQDHIS--SFIDFSVWDFPGQVDVFDAAFDFESIFTQVGALIF 82
Cdd:cd11385   1 RILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKITKDDISnsSFVNFQIWDFPGQLDPFDPTLDPEMIFSGCGALVF 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74626869  83 VIDAQDDYLDALARLHVTVARVVTINPNICIEVFIHKVDGLSDEFKIDTQRDIQQRTQDELADIGLENVPISFHLTSIFD 162
Cdd:cd11385  81 VIDAQDDYDEAIARLVETVTKAYKVNPNINFEVFIHKVDGLSEDHKIETQRDIQQRVTDELADAGLEDVQISFYLTSIYD 160
                       170
                ....*....|....*
gi 74626869 163 HSIFEAFSRVIQKLI 177
Cdd:cd11385 161 HSIFEAFSKVVQKLI 175
Gtr1_RagA pfam04670
Gtr1/RagA G protein conserved region; GTR1 was first identified in S. cerevisiae as a ...
5-229 2.47e-107

Gtr1/RagA G protein conserved region; GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologs of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B.


Pssm-ID: 398377 [Multi-domain]  Cd Length: 231  Bit Score: 311.82  E-value: 2.47e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74626869     5 KIILMGLRRSGKSSIQKVVFYKMPPNETLFLESTSKLTQDHI--SSFIDFSVWDFPGQVDVFDAAF--DFESIFTQVGAL 80
Cdd:pfam04670   1 KVLLMGLSGSGKSSMRSVIFSNYSPRDTLRLGATIDVEHSHVrfLGNLVLNLWDCGGQDDFFDNYLtfQKEHIFSNVGVL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74626869    81 IFVIDAQ-DDYLDALARLHVTVARVVTINPNICIEVFIHKVDGLSDEFKIDTQRDIQQRTQDELADIGLEnVPISFHLTS 159
Cdd:pfam04670  81 IYVFDVQsREYEEDLARLKETIEALYQYSPDAKVFVLIHKMDLIQEDHREEIFRDRKQEIREESEDLGLE-LDLSFFLTS 159
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 74626869   160 IFDHSIFEAFSRVIQKLIPQLPTLENLLNIFCSNSLVEKAYLFDVLSKIYVATDSSP--VDVQSYEICSDFI 229
Cdd:pfam04670 160 IWDESLYKAWSSIVQKLIPNLPTLENLLKVFCSNSDADEVFLFERTTFLVIATDSRSpvDDMQRYEKCSDII 231
Rag cd09915
Rag GTPase subfamily of Ras-related GTPases; Rag GTPases (ras-related GTP-binding proteins) ...
5-177 2.29e-72

Rag GTPase subfamily of Ras-related GTPases; Rag GTPases (ras-related GTP-binding proteins) constitute a unique subgroup of the Ras superfamily, playing an essential role in regulating amino acid-induced target of rapamycin complex 1 (TORC1) kinase signaling, exocytic cargo sorting at endosomes, and epigenetic control of gene expression. This subfamily consists of RagA and RagB as well as RagC and RagD that are closely related. Saccharomyces cerevisiae encodes single orthologs of metazoan RagA/B and RagC/D, Gtr1 and Gtr2, respectively. Dimer formation is important for their cellular function; these domains form heterodimers, as RagA or RagB dimerizes with RagC or RagD, and similarly, Gtr1 dimerizes with Gtr2. In response to amino acids, the Rag GTPases guide the TORC1 complex to activate the platform containing Rheb proto-oncogene by driving the relocalization of mTORC1 from discrete locations in the cytoplasm to a late endosomal and/or lysosomal compartment that is Rheb-enriched and contains Rab-7.


Pssm-ID: 206742 [Multi-domain]  Cd Length: 175  Bit Score: 221.28  E-value: 2.29e-72
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74626869   5 KIILMGLRRSGKSSIQKVVFYKMPPNETLFLESTSKLTQDHIS--SFIDFSVWDFPGQVDVFDAAFDFESIFTQVGALIF 82
Cdd:cd09915   1 KLLL*GRRRSGKSSIRKVVFHNYSPFDTLRLESTIDVEHSHLSflGN*TLNLWDCPGQDVFFEPTKDKEHIFQ*VGALIY 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74626869  83 VIDAQDDYLDALARLHVTVARVVTINPNICIEVFIHKVDGLSDEFKIDTQRDIQQRTQDELADIGLENVPISFHLTSIFD 162
Cdd:cd09915  81 VIDVQDEYLKAITILAKALKQAYKVNPDANIEVLIHKVDGLSLDKKEELQRDI*QRLSETLSEFGLEFPNLSFYLTSIWD 160
                       170
                ....*....|....*
gi 74626869 163 HSIFEAFSRVIQKLI 177
Cdd:cd09915 161 HSIYEAFSQIVQKLI 175
RagA_like cd11384
Rag GTPase, subfamily of Ras-related GTPases, includes Ras-related GTP-binding proteins A and ...
5-223 2.71e-18

Rag GTPase, subfamily of Ras-related GTPases, includes Ras-related GTP-binding proteins A and B; RagA and RagB are closely related Rag GTPases (ras-related GTP-binding protein A and B) that constitute a unique subgroup of the Ras superfamily, and are functional homologs of Saccharomyces cerevisiae Gtr1. These domains function by forming heterodimers with RagC or RagD, and similarly, Gtr1 dimerizes with Gtr2, through the carboxy-terminal segments. They play an essential role in regulating amino acid-induced target of rapamycin complex 1 (TORC1) kinase signaling, exocytic cargo sorting at endosomes, and epigenetic control of gene expression. In response to amino acids, the Rag GTPases guide the TORC1 complex to activate the platform containing Rheb proto-oncogene by driving the relocalization of mTORC1 from discrete locations in the cytoplasm to a late endosomal and/or lysosomal compartment that is Rheb-enriched and contains Rab-7.


Pssm-ID: 206744  Cd Length: 286  Bit Score: 83.03  E-value: 2.71e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74626869   5 KIILMGLRRSGKSSIQKVVFYKMPPNETLFLESTSKLTQDHISSFIDFSV--WDFPGQvDVF-DAAFDF--ESIFTQVGA 79
Cdd:cd11384   1 KVLLMGKSGSGKTSMRSIIFANYLARDTRRLGATIDVEHSHVRFLGNLVLnlWDCGGQ-DAFmENYFTSqrDHIFRNVEV 79
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74626869  80 LIFVIDAQDDYLDA-LARLHVTVARVVTINPNICIEVFIHKVDglsdEFKIDTQRDIQQRTQDELADIGLENVPISFHlT 158
Cdd:cd11384  80 LIYVFDVESRELEKdLTYFRSCLEALRQNSPDAKVFVLIHKMD----LVQEDEREAVFERKEKELRRLSEPLEVTCFP-T 154
                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74626869 159 SIFDHSIFEAFSRVIQKLIPQLPTLENLLNIFCSNSLVEKAYLFD-----VLSKiYVATDSSPVDVQSYE 223
Cdd:cd11384 155 SIWDETLYKAWSSIVYSLIPNIQVLESNLKKFADICEADEVVLFEratflVISH-SSRKEASALDPHRFE 223
Ras_like_GTPase cd00882
Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like ...
8-174 4.26e-07

Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions.


Pssm-ID: 206648 [Multi-domain]  Cd Length: 161  Bit Score: 48.99  E-value: 4.26e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74626869   8 LMGLRRSGKSSIQKVVFYKMPPNETLFLESTSKLTQDHIS---SFIDFSVWDFPGQVD--VFDAAFDFESIFTQVGALIF 82
Cdd:cd00882   2 VVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKEldkGKVKLVLVDTPGLDEfgGLGREELARLLLRGADLILL 81
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74626869  83 VIDAQDDYLDALARLHVTVARVvtiNPNICIEVFIHKVDGLSDEfkidtqrdiqQRTQDELADIGLENVPISFHLTSIFD 162
Cdd:cd00882  82 VVDSTDRESEEDAKLLILRRLR---KEGIPIILVGNKIDLLEER----------EVEELLRLEELAKILGVPVFEVSAKT 148
                       170
                ....*....|...
gi 74626869 163 HS-IFEAFSRVIQ 174
Cdd:cd00882 149 GEgVDELFEKLIE 161
Gem1 COG1100
GTPase SAR1 family domain [General function prediction only];
1-154 1.26e-05

GTPase SAR1 family domain [General function prediction only];


Pssm-ID: 440717 [Multi-domain]  Cd Length: 177  Bit Score: 44.97  E-value: 1.26e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74626869   1 MKPRKIILMGLRRSGKSS-----IQKVVFYKM--PPNETLFleSTSKLTQDHISsfIDFSVWDFPGQVDVFDAAFDFESI 73
Cdd:COG1100   1 MGEKKIVVVGTGGVGKTSlvnrlVGDIFSLEKylSTNGVTI--DKKELKLDGLD--VDLVIWDTPGQDEFRETRQFYARQ 76
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74626869  74 FTQVGALIFVIDA-QDDYLDALARLHVTVARvvtINPNICIEVFIHKVDgLSDEFKIDTQRDIQQRTQDelaDIGLENVP 152
Cdd:COG1100  77 LTGASLYLFVVDGtREETLQSLYELLESLRR---LGKKSPIILVLNKID-LYDEEEIEDEERLKEALSE---DNIVEVVA 149

                ..
gi 74626869 153 IS 154
Cdd:COG1100 150 TS 151
Arl5_Arl8 cd04153
Arf-like 5 (Arl5) and 8 (Arl8) GTPases; Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like ...
5-88 5.32e-05

Arf-like 5 (Arl5) and 8 (Arl8) GTPases; Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.


Pssm-ID: 133353 [Multi-domain]  Cd Length: 174  Bit Score: 43.11  E-value: 5.32e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74626869   5 KIILMGLRRSGKSSIqkvvFYKMPPNETLFLEST--SKLTQDHISSfIDFSVWDFPGQVDVFDAafdFESIFTQVGALIF 82
Cdd:cd04153  17 KVIIVGLDNAGKTTI----LYQFLLGEVVHTSPTigSNVEEIVYKN-IRFLMWDIGGQESLRSS---WNTYYTNTDAVIL 88

                ....*.
gi 74626869  83 VIDAQD 88
Cdd:cd04153  89 VIDSTD 94
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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