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Conserved domains on  [gi|75100599|sp|O82279|]
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RecName: Full=Protein CONSERVED ONLY IN THE GREEN LINEAGE 160, chloroplastic; Short=AtCGL160; Flags: Precursor

Protein Classification

ATP synthase subunit I( domain architecture ID 10511204)

ATP synthase subunit I may guide the assembly of the membrane sector of the ATPase enzyme complex

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ATP-synt_I pfam03899
ATP synthase I chain; The atp operon of alkaliphilic Bacillus pseudofirmus OF4, as in most ...
 215-317 2.44e-04

ATP synthase I chain; The atp operon of alkaliphilic Bacillus pseudofirmus OF4, as in most prokaryotes, contains the eight structural genes for the F-ATPase (ATP synthase), which are preceded by an atpI gene that encodes a membrane protein with 2 TMSs. A tenth gene, atpZ, has been found in this operon, which is upstream of and overlapping with atpI. AtpI is a Ca2+/Mg2+ transporter.


:

Pssm-ID: 461086  Cd Length: 99  Bit Score: 39.89  E-value: 2.44e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75100599   215 KIQVLTLGIGGVGLVSAYISYTPEIALSFGAGLLGSL----AYMRMLGNSVDAMADGARGVAKGAANqpRLLVPVVLVMi 290
Cdd:pfam03899   1 RLVLIQLVLLAVLALGWGLTPGPKVALSALLGGLISVlnfaLFARRLFRFGGALAAKAGKALRSFYL--GEALRLALTI- 77

                          90       100
                  ....*....|....*....|....*..
gi 75100599   291 fnrwnAILVPEYGFMHLELIPMLVGFF 317
Cdd:pfam03899  78 -----ALLALALKYEPLHLIALLLGLS 99
 
Name Accession Description Interval E-value
ATP-synt_I pfam03899
ATP synthase I chain; The atp operon of alkaliphilic Bacillus pseudofirmus OF4, as in most ...
 215-317 2.44e-04

ATP synthase I chain; The atp operon of alkaliphilic Bacillus pseudofirmus OF4, as in most prokaryotes, contains the eight structural genes for the F-ATPase (ATP synthase), which are preceded by an atpI gene that encodes a membrane protein with 2 TMSs. A tenth gene, atpZ, has been found in this operon, which is upstream of and overlapping with atpI. AtpI is a Ca2+/Mg2+ transporter.


Pssm-ID: 461086  Cd Length: 99  Bit Score: 39.89  E-value: 2.44e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75100599   215 KIQVLTLGIGGVGLVSAYISYTPEIALSFGAGLLGSL----AYMRMLGNSVDAMADGARGVAKGAANqpRLLVPVVLVMi 290
Cdd:pfam03899   1 RLVLIQLVLLAVLALGWGLTPGPKVALSALLGGLISVlnfaLFARRLFRFGGALAAKAGKALRSFYL--GEALRLALTI- 77

                          90       100
                  ....*....|....*....|....*..
gi 75100599   291 fnrwnAILVPEYGFMHLELIPMLVGFF 317
Cdd:pfam03899  78 -----ALLALALKYEPLHLIALLLGLS 99
 
Name Accession Description Interval E-value
ATP-synt_I pfam03899
ATP synthase I chain; The atp operon of alkaliphilic Bacillus pseudofirmus OF4, as in most ...
 215-317 2.44e-04

ATP synthase I chain; The atp operon of alkaliphilic Bacillus pseudofirmus OF4, as in most prokaryotes, contains the eight structural genes for the F-ATPase (ATP synthase), which are preceded by an atpI gene that encodes a membrane protein with 2 TMSs. A tenth gene, atpZ, has been found in this operon, which is upstream of and overlapping with atpI. AtpI is a Ca2+/Mg2+ transporter.


Pssm-ID: 461086  Cd Length: 99  Bit Score: 39.89  E-value: 2.44e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75100599   215 KIQVLTLGIGGVGLVSAYISYTPEIALSFGAGLLGSL----AYMRMLGNSVDAMADGARGVAKGAANqpRLLVPVVLVMi 290
Cdd:pfam03899   1 RLVLIQLVLLAVLALGWGLTPGPKVALSALLGGLISVlnfaLFARRLFRFGGALAAKAGKALRSFYL--GEALRLALTI- 77

                          90       100
                  ....*....|....*....|....*..
gi 75100599   291 fnrwnAILVPEYGFMHLELIPMLVGFF 317
Cdd:pfam03899  78 -----ALLALALKYEPLHLIALLLGLS 99
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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