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Conserved domains on  [gi|6647477|sp|O99256|]
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RecName: Full=Cytochrome b; AltName: Full=Complex III subunit 3; AltName: Full=Complex III subunit III; AltName: Full=Cytochrome b-c1 complex subunit 3; AltName: Full=Ubiquinol-cytochrome-c reductase complex cytochrome b subunit

Protein Classification

cytochrome b( domain architecture ID 999997)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Symbol:  CYTB
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl33360
cytochrome b; Provisional
 13-354 6.10e-101

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00156:

Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 302.86  E-value: 6.10e-101
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477    13 LMNYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYSPEISYAYYSIQHILRELWSGWCFRYMHATGASLVFFLTYLH 92
Cdd:MTH00156   8 LIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLH 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477    93 ILRGLNYSYLYLPLSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSGIP----ALVIWLCGGYTVSDPTIKR 168
Cdd:MTH00156  88 IGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPylgtDLVQWIWGGFSVDNATLTR 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477   169 FFVLHFILPFVALCIVFIHIFFLHLHGSTNPLGYDTAL-KIPFYPNLLSLDVKGFNNILILFLIQSIFGVIPLSHPDNAI 247
Cdd:MTH00156 168 FFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIdKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFI 247

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477   248 IVNTYVTPLQIVPEWYFLPFYAMLKTIPSKNAGLVIVVASLQLLFLLA-EQRNLTTIIQFKMVFSAreysvpIIWFMCSF 326
Cdd:MTH00156 248 PANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPfTNKSKFRGNQFYPINKI------LFWIFVNI 321

                        330       340
                 ....*....|....*....|....*....
gi 6647477   327 YALL-WIGCQLPQDIFILYGRLFIILFFS 354
Cdd:MTH00156 322 VILLtWIGARPVEEPYILTGQILTILYFL 350
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 13-354 6.10e-101

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 302.86  E-value: 6.10e-101
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477    13 LMNYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYSPEISYAYYSIQHILRELWSGWCFRYMHATGASLVFFLTYLH 92
Cdd:MTH00156   8 LIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLH 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477    93 ILRGLNYSYLYLPLSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSGIP----ALVIWLCGGYTVSDPTIKR 168
Cdd:MTH00156  88 IGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPylgtDLVQWIWGGFSVDNATLTR 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477   169 FFVLHFILPFVALCIVFIHIFFLHLHGSTNPLGYDTAL-KIPFYPNLLSLDVKGFNNILILFLIQSIFGVIPLSHPDNAI 247
Cdd:MTH00156 168 FFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIdKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFI 247

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477   248 IVNTYVTPLQIVPEWYFLPFYAMLKTIPSKNAGLVIVVASLQLLFLLA-EQRNLTTIIQFKMVFSAreysvpIIWFMCSF 326
Cdd:MTH00156 248 PANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPfTNKSKFRGNQFYPINKI------LFWIFVNI 321

                        330       340
                 ....*....|....*....|....*....
gi 6647477   327 YALL-WIGCQLPQDIFILYGRLFIILFFS 354
Cdd:MTH00156 322 VILLtWIGARPVEEPYILTGQILTILYFL 350
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
12-360 3.44e-82

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 255.87  E-value: 3.44e-82
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477   12 HLMNYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYSPEISYAYYSIQHILRELWSGWCFRYMHATGASLVFFLTYL 91
Cdd:COG1290  26 EHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYL 105

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477   92 HILRGLNY-SYLYlP--LSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSGIP----ALVIWLCGGYTVSDP 164
Cdd:COG1290 106 HMFRGFFYgAYKK-PreLNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPvigtWLVTWLFGGEFPGDA 184

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477  165 TIKRFFVLH-FILPFVALCIVFIHIFFLHLHGSTNPLGYDTALK-----IPFYPNLLSLDVKGFnnILILFLIQSIFGVI 238
Cdd:COG1290 185 TLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPERKKTekvdgVPFHPYYTVKDGFGF--FVFLGVFALLAFFF 262

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477  239 PLSHPDNAIIVNTYVTPLQIVPEWYFLPFYAMLKTIP--SKNAGLVIVVASLQLLFLLAeqrnlttIIQFKMVFSAREYS 316
Cdd:COG1290 263 PINPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLP-------FLDRSPVRSPRYRP 335

                       330       340       350       360
                ....*....|....*....|....*....|....*....|....*.
gi 6647477  317 VPIIWFM--CSFYALLWIGCQLPqDIFILYGRLFIILFFSSGLFAL 360
Cdd:COG1290 336 VRTALGVafIVFFIVLTILGANP-PIATLLGSINTVTYFAFFLIVL 380
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 8-197 1.10e-58

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 189.12  E-value: 1.10e-58
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477    8 LVKTHLMNYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYSPEISYAYYSIQHILRELWSGWCFRYMHATGASLVFF 87
Cdd:cd00284   5 EVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFL 84

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477   88 LTYLHILRGLNYSYLYLP--LSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSGIP----ALVIWLCGGYTV 161
Cdd:cd00284  85 MLYLHIFRGLYYGSYKKPreLTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPvigiTLVEWLWGGFSV 164

                       170       180       190
                ....*....|....*....|....*....|....*.
gi 6647477  162 SDPTIKRFFVLHFILPFVALCIVFIHIFFLHLHGST 197
Cdd:cd00284 165 DNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
13-195 1.35e-49

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 165.25  E-value: 1.35e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477     13 LMNYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYSPEISYAYYSIQHILRELWSGWCFRYMHATGASLVFFLTYLH 92
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477     93 ILRGLNYSYLYLP--LSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSGIP----ALVIWLCGGYTVSDPTI 166
Cdd:pfam00033  81 IFRGLYYGGFSYPreLTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPvigdTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 6647477    167 KRFFVLHFILPFVALCIVFIHIFFLHLHG 195
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 13-354 6.10e-101

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 302.86  E-value: 6.10e-101
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477    13 LMNYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYSPEISYAYYSIQHILRELWSGWCFRYMHATGASLVFFLTYLH 92
Cdd:MTH00156   8 LIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLH 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477    93 ILRGLNYSYLYLPLSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSGIP----ALVIWLCGGYTVSDPTIKR 168
Cdd:MTH00156  88 IGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPylgtDLVQWIWGGFSVDNATLTR 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477   169 FFVLHFILPFVALCIVFIHIFFLHLHGSTNPLGYDTAL-KIPFYPNLLSLDVKGFNNILILFLIQSIFGVIPLSHPDNAI 247
Cdd:MTH00156 168 FFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIdKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFI 247

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477   248 IVNTYVTPLQIVPEWYFLPFYAMLKTIPSKNAGLVIVVASLQLLFLLA-EQRNLTTIIQFKMVFSAreysvpIIWFMCSF 326
Cdd:MTH00156 248 PANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPfTNKSKFRGNQFYPINKI------LFWIFVNI 321

                        330       340
                 ....*....|....*....|....*....
gi 6647477   327 YALL-WIGCQLPQDIFILYGRLFIILFFS 354
Cdd:MTH00156 322 VILLtWIGARPVEEPYILTGQILTILYFL 350
CYTB MTH00191
cytochrome b; Provisional
 6-358 1.96e-98

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 296.83  E-value: 1.96e-98
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477     6 INLVKTHLMNYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYSPEISYAYYSIQHILRELWSGWCFRYMHATGASLV 85
Cdd:MTH00191   8 LKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFF 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477    86 FFLTYLHILRGLNY-SYLYLpLSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSGIP----ALVIWLCGGYT 160
Cdd:MTH00191  88 FICIYLHIGRGLYYgSYLNK-ETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPyigdDLVQWLWGGFS 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477   161 VSDPTIKRFFVLHFILPFVALCIVFIHIFFLHLHGSTNPLGYDT-ALKIPFYPNLLSLDVKGFNNILILFLIQSIFGVIP 239
Cdd:MTH00191 167 VDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSdSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNL 246

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477   240 LSHPDNAIIVNTYVTPLQIVPEWYFLPFYAMLKTIPSKNAGLVIVVASLQLLFLL-----AEQRNLTTIIQFKMVFsare 314
Cdd:MTH00191 247 LGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLpllhtSKQRSNTFRPLTQVVF---- 322

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*
gi 6647477   315 ysvpiiWFM-CSFYALLWIGCQLPQDIFILYGRLFIILFFSSGLF 358
Cdd:MTH00191 323 ------WLWvANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLL 361
CYTB MTH00145
cytochrome b; Provisional
 6-355 7.51e-97

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 292.96  E-value: 7.51e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477     6 INLVKTHLMNYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYSPEISYAYYSIQHILRELWSGWCFRYMHATGASLV 85
Cdd:MTH00145  12 LKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFF 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477    86 FFLTYLHILRGLNY-SYLYLPlSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSGIP----ALVIWLCGGYT 160
Cdd:MTH00145  92 FICIYLHIGRGLYYgSYLMQH-TWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPyvgkMLVEWVWGGFS 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477   161 VSDPTIKRFFVLHFILPFVALCIVFIHIFFLHLHGSTNPLGYDTAL-KIPFYPNLLSLDVKGFNNILILFLIQSIFGVIP 239
Cdd:MTH00145 171 VGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGdKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNL 250

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477   240 LSHPDNAIIVNTYVTPLQIVPEWYFLPFYAMLKTIPSKNAGLVIVVASLQLLFLLAEqrnlttiIQFKMVFSAREYSVP- 318
Cdd:MTH00145 251 LGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPL-------LHVGKFRSLSFYPLNq 323

                        330       340       350
                 ....*....|....*....|....*....|....*....
gi 6647477   319 -IIWFMCSFYALL-WIGCQLPQDIFILYGRLFIILFFSS 355
Cdd:MTH00145 324 vLFWIFVGNFFILtWIGACPVEEPYETIGQVFTVLYFLF 362
CYTB MTH00119
cytochrome b; Provisional
 8-360 1.44e-94

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 287.18  E-value: 1.44e-94
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477     8 LVKTHLMNYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYSPEISYAYYSIQHILRELWSGWCFRYMHATGASLVFF 87
Cdd:MTH00119  14 IINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFI 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477    88 LTYLHILRGLNY-SYLYLPlSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSGIP----ALVIWLCGGYTVS 162
Cdd:MTH00119  94 CIYLHIGRGLYYgSYLYKE-TWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPyigqTLVEWIWGGFSVD 172

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477   163 DPTIKRFFVLHFILPFVALCIVFIHIFFLHLHGSTNPLGYDTAL-KIPFYPNLLSLDVKGFNNILILFLIQSIFGVIPLS 241
Cdd:MTH00119 173 NPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTdKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLG 252

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477   242 HPDNAIIVNTYVTPLQIVPEWYFLPFYAMLKTIPSKNAGLVIVVASLQLLFLLAeqrNLTTIIQFKMVFsaREYSVPIIW 321
Cdd:MTH00119 253 DPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMP---FLHTSKQRSMTF--RPLSQLLFW 327

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|
gi 6647477   322 FMCS-FYALLWIGCQLPQDIFILYGRLFIILFFSSGLFAL 360
Cdd:MTH00119 328 TLVAnLLILTWIGSQPVEHPFIIIGQLASILYFTILLILF 367
CYTB MTH00016
cytochrome b; Validated
 13-354 9.64e-92

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 280.02  E-value: 9.64e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477    13 LMNYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYSPEISYAYYSIQHILRELWSGWCFRYMHATGASLVFFLTYLH 92
Cdd:MTH00016  19 LVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLH 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477    93 ILRGLNYSYLYLPLSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSGIP----ALVIWLCGGYTVSDPTIKR 168
Cdd:MTH00016  99 IGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPyigkMLVQWLWGGFSVDNATLTR 178

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477   169 FFVLHFILPFVALCIVFIHIFFLHLHGSTNPLGYDTAL-KIPFYPNLLSLDVKGFNNILILFLIQSIFGVIPLSHPDNAI 247
Cdd:MTH00016 179 FFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSdKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFI 258

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477   248 IVNTYVTPLQIVPEWYFLPFYAMLKTIPSKNAGLVIVVASLQLLFLLAeqrnlttiIQFKMVFSAREYSVP---IIWFMC 324
Cdd:MTH00016 259 PANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLP--------FIFKQKFRGLSFYPLnqiLFWLLV 330

                        330       340       350
                 ....*....|....*....|....*....|.
gi 6647477   325 SFYALL-WIGCQLPQDIFILYGRLFIILFFS 354
Cdd:MTH00016 331 SNFLLLtWIGGRPVEPPYEFLGQIFTVFYFF 361
CYTB MTH00131
cytochrome b; Provisional
 7-354 1.04e-88

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 272.30  E-value: 1.04e-88
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477     7 NLVKTH---------LMNYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYSPEISYAYYSIQHILRELWSGWCFRYM 77
Cdd:MTH00131   3 SLRKTHpllkiandaLVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477    78 HATGASLVFFLTYLHILRGLNY-SYLYLPlSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSGIP----ALV 152
Cdd:MTH00131  83 HANGASFFFICIYLHIGRGLYYgSYLYKE-TWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPyvgnTLV 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477   153 IWLCGGYTVSDPTIKRFFVLHFILPFVALCIVFIHIFFLHLHGSTNPLGYDT-ALKIPFYPNLLSLDVKGFNNILILFLI 231
Cdd:MTH00131 162 QWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSdADKISFHPYFSYKDLLGFAILLLALTS 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477   232 QSIFGVIPLSHPDNAIIVNTYVTPLQIVPEWYFLPFYAMLKTIPSKNAGLVIVVASLQLLFLL-----AEQRNLTTIIQF 306
Cdd:MTH00131 242 LALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVpilhtSKQRGLTFRPLT 321

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*...
gi 6647477   307 KMVFSAREYSVPIiwfmcsfyaLLWIGCQLPQDIFILYGRLFIILFFS 354
Cdd:MTH00131 322 QFLFWTLVADVLI---------LTWIGGMPVEHPFIIIGQVASVLYFS 360
CYTB MTH00100
cytochrome b; Provisional
 6-354 4.51e-88

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 270.74  E-value: 4.51e-88
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477     6 INLVKTH---------LMNYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYSPEISYAYYSIQHILRELWSGWCFRY 76
Cdd:MTH00100   2 TNIRKTHplmkiinhsFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRY 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477    77 MHATGASLVFFLTYLHILRGLNY-SYLYLPlSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSGIP----AL 151
Cdd:MTH00100  82 LHANGASMFFICLFLHVGRGLYYgSYLFLE-TWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPyigtTL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477   152 VIWLCGGYTVSDPTIKRFFVLHFILPFVALCIVFIHIFFLHLHGSTNPLGYDT-ALKIPFYPNLLSLDVKGFNNILILFL 230
Cdd:MTH00100 161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSdSDKIPFHPYYTIKDILGLLLLILTLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477   231 IQSIFGVIPLSHPDNAIIVNTYVTPLQIVPEWYFLPFYAMLKTIPSKNAGLVIVVASLQLLFLLAEqrnLTTIIQFKMVF 310
Cdd:MTH00100 241 LLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPL---LHTSKQRSMMF 317

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*
gi 6647477   311 saREYSVPIIWFMCS-FYALLWIGCQLPQDIFILYGRLFIILFFS 354
Cdd:MTH00100 318 --RPLSQCLFWLLVAdLLTLTWIGGQPVEHPFIIIGQLASILYFL 360
CYTB MTH00074
cytochrome b; Provisional
 6-353 5.30e-86

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 265.39  E-value: 5.30e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477     6 INLVKTHLMNYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYSPEISYAYYSIQHILRELWSGWCFRYMHATGASLV 85
Cdd:MTH00074  12 LKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFF 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477    86 FFLTYLHILRGLNY-SYLYLPlSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSGIP----ALVIWLCGGYT 160
Cdd:MTH00074  92 FICIYLHIGRGLYYgSYMYKE-TWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPymgdTLVQWIWGGFS 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477   161 VSDPTIKRFFVLHFILPFVALCIVFIHIFFLHLHGSTNPLGYDTAL-KIPFYPNLLSLDVKGFNNILILFLIQSIFGVIP 239
Cdd:MTH00074 171 VDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPdKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNL 250

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477   240 LSHPDNAIIVNTYVTPLQIVPEWYFLPFYAMLKTIPSKNAGLVIVVASLQLLFLL-----AEQRNLTTIIQFKMVFsare 314
Cdd:MTH00074 251 LGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIpmlhtSKQRSLMFRPLTQILF---- 326

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|
gi 6647477   315 ysvpiiWFMCSFYALL-WIGCQLPQDIFILYGRLFIILFF 353
Cdd:MTH00074 327 ------WLLVANTLILtWIGGQPVEDPFIEIGQAASILYF 360
CYTB MTH00034
cytochrome b; Validated
 6-360 5.30e-83

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 257.71  E-value: 5.30e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477     6 INLVKTHLMNYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYSPEISYAYYSIQHILRELWSGWCFRYMHATGASLV 85
Cdd:MTH00034  11 FKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLF 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477    86 FFLTYLHILRGLNYSYLYLPLSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSGIP----ALVIWLCGGYTV 161
Cdd:MTH00034  91 FICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPyigtDIVQWIWGGFSV 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477   162 SDPTIKRFFVLHFILPFVALCIVFIHIFFLHLHGSTNPLGYDTAL-KIPFYPNLLSLDVKGFNNILILFLIQSIFGVIPL 240
Cdd:MTH00034 171 DNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYdKVPFHTYFTTKDLVGFLILFAALSSLALLFPTAL 250

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477   241 SHPDNAIIVNTYVTPLQIVPEWYFLPFYAMLKTIPSKNAGLVIVVASLQLLFLLAEqrnLTTIIQFKMVFsaREYSVPII 320
Cdd:MTH00034 251 NDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPI---LHTSNNQSSTF--RPLSQIAF 325

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|.
gi 6647477   321 WFMCS-FYALLWIGCQLPQDIFILYGRLFIILFFSSGLFAL 360
Cdd:MTH00034 326 WLLIAtFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFFF 366
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
12-360 3.44e-82

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 255.87  E-value: 3.44e-82
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477   12 HLMNYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYSPEISYAYYSIQHILRELWSGWCFRYMHATGASLVFFLTYL 91
Cdd:COG1290  26 EHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYL 105

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477   92 HILRGLNY-SYLYlP--LSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSGIP----ALVIWLCGGYTVSDP 164
Cdd:COG1290 106 HMFRGFFYgAYKK-PreLNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPvigtWLVTWLFGGEFPGDA 184

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477  165 TIKRFFVLH-FILPFVALCIVFIHIFFLHLHGSTNPLGYDTALK-----IPFYPNLLSLDVKGFnnILILFLIQSIFGVI 238
Cdd:COG1290 185 TLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPERKKTekvdgVPFHPYYTVKDGFGF--FVFLGVFALLAFFF 262

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477  239 PLSHPDNAIIVNTYVTPLQIVPEWYFLPFYAMLKTIP--SKNAGLVIVVASLQLLFLLAeqrnlttIIQFKMVFSAREYS 316
Cdd:COG1290 263 PINPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLP-------FLDRSPVRSPRYRP 335

                       330       340       350       360
                ....*....|....*....|....*....|....*....|....*.
gi 6647477  317 VPIIWFM--CSFYALLWIGCQLPqDIFILYGRLFIILFFSSGLFAL 360
Cdd:COG1290 336 VRTALGVafIVFFIVLTILGANP-PIATLLGSINTVTYFAFFLIVL 380
CYTB MTH00224
cytochrome b; Provisional
 6-354 5.73e-81

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 252.53  E-value: 5.73e-81
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477     6 INLVKTHLMNYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYSPEISYAYYSIQHILRELWSGWCFRYMHATGASLV 85
Cdd:MTH00224  12 IKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMF 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477    86 FFLTYLHILRGLNYSYLYLPLSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSGIP----ALVIWLCGGYTV 161
Cdd:MTH00224  92 FLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPyigkDLVEWIWGGFAV 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477   162 SDPTIKRFFVLHFILPFVALCIVFIHIFFLHLHGSTNPLGYDT-ALKIPFYPNLLSLDVKGFNNILILFLIQSIFGVIPL 240
Cdd:MTH00224 172 DNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINAdSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLF 251

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477   241 SHPDNAIIVNTYVTPLQIVPEWYFLPFYAMLKTIPSKNAGLVIVVASLQLLFLL-----AEQRNLTTIIQFKMVFsarey 315
Cdd:MTH00224 252 TDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILpltsvMNKRSLPFYPLNQLLF----- 326

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|
gi 6647477   316 svpiiW-FMCSFYALLWIGCQLPQDIFILYGRLFIILFFS 354
Cdd:MTH00224 327 -----WlLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFS 361
CYTB MTH00022
cytochrome b; Validated
 6-354 2.31e-80

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 250.77  E-value: 2.31e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477     6 INLVKTHLMNYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYSPEISYAYYSIQHILRELWSGWCFRYMHATGASLV 85
Cdd:MTH00022  10 LSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLF 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477    86 FFLTYLHILRGLNY-SYLYLPLsWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSGIP----ALVIWLCGGYT 160
Cdd:MTH00022  90 FLCLYIHIGRGLYYgGYLKFHV-WNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPyvgtDIVQWVWGGFS 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477   161 VSDPTIKRFFVLHFILPFVALCIVFIHIFFLHLHGSTNPLGYDTAL-KIPFYPNLLSLDVKGFNNILILFLIQSIFGVIP 239
Cdd:MTH00022 169 VSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVdKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNL 248

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477   240 LSHPDNAIIVNTYVTPLQIVPEWYFLPFYAMLKTIPSKNAGLVIVVASLQLLFLL-----AEQRNLTTIIQFKMVFsare 314
Cdd:MTH00022 249 LGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLpllhtSWLRGLTFRPLGRMAF---- 324

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|.
gi 6647477   315 ysvpiiWFMCSFYALL-WIGCQLPQDIFILYGRLFIILFFS 354
Cdd:MTH00022 325 ------WFLIVDFILLtWIGSQVVEEPFILIGQLLSFFYFF 359
CYTB MTH00053
cytochrome b; Provisional
 6-354 6.22e-80

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 250.01  E-value: 6.22e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477     6 INLVKTHLMNYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYSPEISYAYYSIQHILRELWSGWCFRYMHATGASLV 85
Cdd:MTH00053  12 ISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMF 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477    86 FFLTYLHILRGLNYSYLYLPLSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSGIP----ALVIWLCGGYTV 161
Cdd:MTH00053  92 FLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPyvgdDIVRWVWGGFSV 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477   162 SDPTIKRFFVLHFILPFVALCIVFIHIFFLHLHGSTNPLGYDTAL-KIPFYPNLLSLDVKGFNNILILFLIQSIFGVIPL 240
Cdd:MTH00053 172 SNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIdKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSL 251

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477   241 SHPDNAIIVNTYVTPLQIVPEWYFLPFYAMLKTIPSKNAGLVIVVASLQLLFLLAeqrnLTTIIQFKMVfSAREYSVPII 320
Cdd:MTH00053 252 GDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLP----YLHKSRFRGL-SFRPLSKILF 326

                        330       340       350
                 ....*....|....*....|....*....|....*
gi 6647477   321 WFMCS-FYALLWIGCQLPQDIFILYGRLFIILFFS 354
Cdd:MTH00053 327 WFLVGdFFLLTWIGGQPVEEPYILIGQIASIFYFA 361
CYTB MTH00086
cytochrome b; Provisional
 7-364 3.29e-74

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 234.06  E-value: 3.29e-74
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477     7 NLVKTHLMNYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYSPEISYAYYSIQHILRELWSGWCFRYMHATGASLVF 86
Cdd:MTH00086   1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477    87 FLTYLHILRGLNYSYLYLPLSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSGIP----ALVIWLCGGYTVS 162
Cdd:MTH00086  81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPiwgpSIVMWIWGGFGVS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477   163 DPTIKRFFVLHFILPFVALCIVFIHIFFLHLHGSTNPLG-YDTALKIPFYPNLLsldVKGFNNILI--LFLIQSIFGVIP 239
Cdd:MTH00086 161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYcHGDYDKICFGPEYW---NKDAYNIIFwlVFIIFSLFYPFN 237

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477   240 LSHPDNAIIVNTYVTPLQIVPEWYFLPFYAMLKTIPSKNAGLVIVVASLQLLFLLAEQRNLTTIIQFKMVFSareysvpI 319
Cdd:MTH00086 238 LGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNYTSCLNKLNKFL-------V 310

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*
gi 6647477   320 IWFMCSFYALLWIGCQLPQDIFILYGRLFIILFFSSGLFALVHYK 364
Cdd:MTH00086 311 FSFIVVNVILSWLGQCLVEYPFLFLSQIFSFIYFFLILLMLFLFY 355
CYTB MTH00033
cytochrome b; Provisional
 13-353 1.40e-67

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 218.27  E-value: 1.40e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477    13 LMNYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYSPEISYAYYSIQHILRELWSGWCFRYMHATGASLVFFLTYLH 92
Cdd:MTH00033  15 IIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCH 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477    93 ILRGLNYSYLYLPLSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSGIP----ALVIWLCGGYTVSDPTIKR 168
Cdd:MTH00033  95 IGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPsvggSIVEWIWGGFSVSNCTLNR 174

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477   169 FFVLHFILPFVALCIVFIHIFFLHLHGSTNPLGY-DTALKIPFYPNLLSLDVKGFnniLILFLIQSIFGVIP-----LSH 242
Cdd:MTH00033 175 FFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLvGLSDRTAFHVYFTIKDILGF---LILFGVFVIIGIEPrietlLQD 251

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477   243 PDNAIIVNTYVTPLQIVPEWYFLPFYAMLKTIPSKNAGLVIVVASLQLLFLL-----AEQRNLTTIIQFKMVFsareysv 317
Cdd:MTH00033 252 PENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMpildrSKIRSLTFNPTGKFFF------- 324

                        330       340       350
                 ....*....|....*....|....*....|....*...
gi 6647477   318 piiWFMC-SFYALLWIG-CQLPQDIFILYGRLFIILFF 353
Cdd:MTH00033 325 ---WFIVgDFIILTWIGsAPAGADPYVLIGRIATIFYF 359
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 8-197 1.10e-58

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 189.12  E-value: 1.10e-58
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477    8 LVKTHLMNYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYSPEISYAYYSIQHILRELWSGWCFRYMHATGASLVFF 87
Cdd:cd00284   5 EVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFL 84

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477   88 LTYLHILRGLNYSYLYLP--LSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSGIP----ALVIWLCGGYTV 161
Cdd:cd00284  85 MLYLHIFRGLYYGSYKKPreLTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPvigiTLVEWLWGGFSV 164

                       170       180       190
                ....*....|....*....|....*....|....*.
gi 6647477  162 SDPTIKRFFVLHFILPFVALCIVFIHIFFLHLHGST 197
Cdd:cd00284 165 DNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
CYTB MTH00046
cytochrome b; Validated
 6-364 7.35e-50

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 170.93  E-value: 7.35e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477     6 INLVKTHLMNYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYSPEISYAYYSIQHILRELWSGWCFRYMHATGASLV 85
Cdd:MTH00046   2 ISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477    86 FFLTYLHILRGLNYSYLYLPLSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSGIP----ALVIWLCGGYTV 161
Cdd:MTH00046  82 FILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPivgsLVYKYIVGGFSV 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477   162 SDPTIKRFFVLHFILPFVALCIVFIHIFFLHLHGSTNPLgydtalkipFYPNLLSlDVKGFN------NILILFLIQSIF 235
Cdd:MTH00046 162 TGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPL---------FSSNGYS-DVVYFHsyftvkDLFLFMVVCSLL 231

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477   236 GVIPLSHPDNAIIVNTY------VTPLQIVPEWYFLPFYAMLKTIPSKNAGLVIVVASLQLLFLLAEQRNLTTIIQFKMV 309
Cdd:MTH00046 232 VFWLFVSPDLVLDIEAYleadplVTPVSIKPEWYFLAFYAMLRSINSKIGGLVLVLSFLFFLWVPTFNGSSVYSVWRQVN 311

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 6647477   310 FsareysvpiiWFMCS-FYALLWIGCQLPQDIFILYGRLFIILFfssgLFALVHYK 364
Cdd:MTH00046 312 F----------WLIVSlFFSLSYLGGCHPEYPYLLISQLFSVLM----VLLLFIFK 353
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
13-195 1.35e-49

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 165.25  E-value: 1.35e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477     13 LMNYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYSPEISYAYYSIQHILRELWSGWCFRYMHATGASLVFFLTYLH 92
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477     93 ILRGLNYSYLYLP--LSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSGIP----ALVIWLCGGYTVSDPTI 166
Cdd:pfam00033  81 IFRGLYYGGFSYPreLTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPvigdTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 6647477    167 KRFFVLHFILPFVALCIVFIHIFFLHLHG 195
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
PRK03735 PRK03735
cytochrome b6; Provisional
 24-200 8.18e-26

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 103.64  E-value: 8.18e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477    24 FLWNYGFLLGIIFFIQILTGVFLASRYSPEISYAYYSIQHILRELWSGWCFRYMHATGASLVFFLTYLHILRGLNYSYLY 103
Cdd:PRK03735  40 FVYCFGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYK 119

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477   104 LP--LSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSGIP----ALVIWLCGGYTVSDPTIKRFFVLH-FIL 176
Cdd:PRK03735 120 KPreLNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPvigdFIKTLLRGGEIVGAQTLTRFFAIHvFFL 199

                        170       180
                 ....*....|....*....|....
gi 6647477   177 PFVALCIVFIHIFFLHLHGSTNPL 200
Cdd:PRK03735 200 PWALAVLMLAHFLMIRKQGISGPL 223
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
250-352 4.77e-23

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 92.16  E-value: 4.77e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477    250 NTYVTPLQIVPEWYFLPFYAMLKTIPSKNAGLVIVVASLQLLFLLAE-QRNLTTIIQFKMVFSAreysvpIIW-FMCSFY 327
Cdd:pfam00032   3 NPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWlDRSPVRSIRYRPLFKI------FFWlFVVDFV 76

                          90       100
                  ....*....|....*....|....*
gi 6647477    328 ALLWIGCQLPQDIFILYGRLFIILF 352
Cdd:pfam00032  77 VLGWLGKQPPTGPYTLLGQIATVYY 101
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
83-243 7.02e-22

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 91.15  E-value: 7.02e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477     83 SLVFFLTYLHILRGLNY-SYLYLP-LSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSGIP----ALVIWLC 156
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTgAYRKPReLNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPvvgtWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477    157 GGYTVSDPTIKRFFVLHF-ILPFVALCIVFIHIFFLHLHGSTNPLG-YDTALKIPFYPNLLSLDVKGFNNILILFLIQSI 234
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGtEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 6647477    235 FGVIPLSHP 243
Cdd:pfam13631 161 INPIWLGGP 169
petB CHL00070
cytochrome b6
 19-200 7.41e-21

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 89.78  E-value: 7.41e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477    19 PLNINFLWNYGFLLGIIFFIQILTGVFLASRYSPEISYAYYSIQHILRELWSGWCFRYMHATGASLVFFLTYLHILRgln 98
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFR--- 103

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477    99 ysyLYLP--------LSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSGIP----ALVIWLCGGYTVSDPTI 166
Cdd:CHL00070 104 ---VYLTggfkkpreLTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPvigsPLVELLRGSVSVGQSTL 180

                        170       180       190
                 ....*....|....*....|....*....|....*
gi 6647477   167 KRFFVLH-FILPFVALCIVFIHIFFLHLHGSTNPL 200
Cdd:CHL00070 181 TRFYSLHtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 207-348 9.75e-18

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 79.23  E-value: 9.75e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477  207 KIPFYPNLLSLDVKGFNNILILFLIQSIFGVIPLSHPDNAIIVNTYVTPLQIVPEWYFLPFYAMLKTIPSKNAGLVIVVA 286
Cdd:cd00290  11 KISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPNKLLGVLAMAA 90

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 6647477  287 SLQLLFLLAEQRNLTTIIQFKMVfsareYSVPIIWFMCSFYALLWIGCQLPQDIFILYGRLF 348
Cdd:cd00290  91 SILSLFLVPFLENSNKRSQFRPL-----RPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
petD CHL00058
cytochrome b6/f complex subunit IV
 223-286 9.51e-06

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 45.38  E-value: 9.51e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647477   223 NNILILF---LIQSIFGVIPLSHPDNAII---VNTYVTPLQIVPEWYFLPFYAMLKTIPSKNAGLVIVVA 286
Cdd:CHL00058  34 NDLLYIFpvvILGTIACNVGLAVLEPSMIgepADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMAS 103
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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