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Conserved domains on  [gi|1028513482|gb|OAI91820|]
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hypothetical protein AYO27_23695 [Rhizobium sp. GHKF11]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF6117 super family cl45017
Family of unknown function (DUF6117); This family of proteins is functionally uncharacterized. ...
 1-84 8.97e-44

Family of unknown function (DUF6117); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 71 and 116 amino acids in length.


The actual alignment was detected with superfamily member pfam19612:

Pssm-ID: 437444  Cd Length: 87  Bit Score: 136.25  E-value: 8.97e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1028513482  1 MAIPDHARTNFDTLLRAASDGNLALMECLDATTREPGYVLCGVGRSNGEFFFTPFGHLADGNPYDAYLPPDRENPAGFIV 80
Cdd:pfam19612  1 MAIPDHARTNFNTLLRAAGDGNLALMECLDAATGERRYVLCAVGRDGGDYVFTPFGHLADGNPYDAYLPPDPDDPAGFLT 80


                 ....
gi 1028513482 81 NPPC 84
Cdd:pfam19612 81 AAQD 84
 
Name Accession Description Interval E-value
DUF6117 pfam19612
Family of unknown function (DUF6117); This family of proteins is functionally uncharacterized. ...
 1-84 8.97e-44

Family of unknown function (DUF6117); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 71 and 116 amino acids in length.


Pssm-ID: 437444  Cd Length: 87  Bit Score: 136.25  E-value: 8.97e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1028513482  1 MAIPDHARTNFDTLLRAASDGNLALMECLDATTREPGYVLCGVGRSNGEFFFTPFGHLADGNPYDAYLPPDRENPAGFIV 80
Cdd:pfam19612  1 MAIPDHARTNFNTLLRAAGDGNLALMECLDAATGERRYVLCAVGRDGGDYVFTPFGHLADGNPYDAYLPPDPDDPAGFLT 80


                 ....
gi 1028513482 81 NPPC 84
Cdd:pfam19612 81 AAQD 84
 
Name Accession Description Interval E-value
DUF6117 pfam19612
Family of unknown function (DUF6117); This family of proteins is functionally uncharacterized. ...
 1-84 8.97e-44

Family of unknown function (DUF6117); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 71 and 116 amino acids in length.


Pssm-ID: 437444  Cd Length: 87  Bit Score: 136.25  E-value: 8.97e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1028513482  1 MAIPDHARTNFDTLLRAASDGNLALMECLDATTREPGYVLCGVGRSNGEFFFTPFGHLADGNPYDAYLPPDRENPAGFIV 80
Cdd:pfam19612  1 MAIPDHARTNFNTLLRAAGDGNLALMECLDAATGERRYVLCAVGRDGGDYVFTPFGHLADGNPYDAYLPPDPDDPAGFLT 80


                 ....
gi 1028513482 81 NPPC 84
Cdd:pfam19612 81 AAQD 84
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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