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Conserved domains on  [gi|1032276980|gb|OAO91308|]
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hypothetical protein AXX17_AT5G27660 [Arabidopsis thaliana]

Protein Classification

eS21 family ribosomal protein( domain architecture ID 10472478)

eS21 family ribosomal protein is involved in the regulation of protein synthesis and cell growth

Gene Ontology:  GO:0003735|GO:0006364

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ribosomal_S21e pfam01249
Ribosomal protein S21e;
1-77 2.33e-51

Ribosomal protein S21e;


:

Pssm-ID: 460133  Cd Length: 79  Bit Score: 154.99  E-value: 2.33e-51
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1032276980  1 MQNEEGQVTELYIPRKCSATNRLITSKDHASVQLNIGHLDANGLYTGQFTTFALCGFVRAQGDADSGVDRLWQKKKV 77
Cdd:pfam01249  1 MQNDAGELVDLYIPRKCSATNRLITAKDHASVQINVAEVDENGRMTGQFTTYALCGYIRRMGESDDALNRLAQKDGL 77
 
Name Accession Description Interval E-value
Ribosomal_S21e pfam01249
Ribosomal protein S21e;
1-77 2.33e-51

Ribosomal protein S21e;


Pssm-ID: 460133  Cd Length: 79  Bit Score: 154.99  E-value: 2.33e-51
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1032276980  1 MQNEEGQVTELYIPRKCSATNRLITSKDHASVQLNIGHLDANGLYTGQFTTFALCGFVRAQGDADSGVDRLWQKKKV 77
Cdd:pfam01249  1 MQNDAGELVDLYIPRKCSATNRLITAKDHASVQINVAEVDENGRMTGQFTTYALCGYIRRMGESDDALNRLAQKDGL 77
 
Name Accession Description Interval E-value
Ribosomal_S21e pfam01249
Ribosomal protein S21e;
1-77 2.33e-51

Ribosomal protein S21e;


Pssm-ID: 460133  Cd Length: 79  Bit Score: 154.99  E-value: 2.33e-51
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1032276980  1 MQNEEGQVTELYIPRKCSATNRLITSKDHASVQLNIGHLDANGLYTGQFTTFALCGFVRAQGDADSGVDRLWQKKKV 77
Cdd:pfam01249  1 MQNDAGELVDLYIPRKCSATNRLITAKDHASVQINVAEVDENGRMTGQFTTYALCGYIRRMGESDDALNRLAQKDGL 77
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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