NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1032295958|gb|OAP10284|]
View 

hypothetical protein AXX17_AT2G40380 [Arabidopsis thaliana]

Protein Classification

carbohydrate-binding X8 domain-containing protein( domain architecture ID 10654869)

carbohydrate-binding X8 domain-containing protein similar to Olea europaea major pollen allergen Ole e 10, a carbohydrate-binding protein that preferentially binds 1,3-beta-glucans and may be involved in pollen tube wall re-formation during germination

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
X8 smart00768
Possibly involved in carbohydrate binding; The X8 domain, which may be involved in ...
39-117 5.25e-26

Possibly involved in carbohydrate binding; The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges.


:

Pssm-ID: 197867 [Multi-domain]  Cd Length: 85  Bit Score: 93.09  E-value: 5.25e-26
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032295958   39 LWCMENPYAYFRRVISSLKWACKNGADCSPLEKGGRCQDLDNYRSQASYAFNDYYQKNP-IPRNCDFNGAAVLTVQDPSN 117
Cdd:smart00768   1 LWCVAKPDADEAALQAALDYACGQGADCTAIQPGGSCYSPNTVKAHASYAFNSYYQKQGqSSGACDFSGTATITTTDPST 80
 
Name Accession Description Interval E-value
X8 smart00768
Possibly involved in carbohydrate binding; The X8 domain, which may be involved in ...
39-117 5.25e-26

Possibly involved in carbohydrate binding; The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges.


Pssm-ID: 197867 [Multi-domain]  Cd Length: 85  Bit Score: 93.09  E-value: 5.25e-26
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032295958   39 LWCMENPYAYFRRVISSLKWACKNGADCSPLEKGGRCQDLDNYRSQASYAFNDYYQKNP-IPRNCDFNGAAVLTVQDPSN 117
Cdd:smart00768   1 LWCVAKPDADEAALQAALDYACGQGADCTAIQPGGSCYSPNTVKAHASYAFNSYYQKQGqSSGACDFSGTATITTTDPST 80
X8 pfam07983
X8 domain; The X8 domain domain contains at least 6 conserved cysteine residues that ...
39-109 4.13e-11

X8 domain; The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteriztic of GPI-anchored domains.


Pssm-ID: 400371  Cd Length: 76  Bit Score: 54.91  E-value: 4.13e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1032295958  39 LWCMENPYAYFRRVISSLKWACkNGADCSPLEKGGR-----CQDLDNYRSQASYAFNDYYQK-NPIPRNCDFNGAAV 109
Cdd:pfam07983   1 LWCVAKDSVDDEDLQDLFDYAC-GQADCSGIQANGTtgkygCYSPCTVKQHLSYAFNSYYQKqGKASSACDFSGSAT 76
 
Name Accession Description Interval E-value
X8 smart00768
Possibly involved in carbohydrate binding; The X8 domain, which may be involved in ...
39-117 5.25e-26

Possibly involved in carbohydrate binding; The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges.


Pssm-ID: 197867 [Multi-domain]  Cd Length: 85  Bit Score: 93.09  E-value: 5.25e-26
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032295958   39 LWCMENPYAYFRRVISSLKWACKNGADCSPLEKGGRCQDLDNYRSQASYAFNDYYQKNP-IPRNCDFNGAAVLTVQDPSN 117
Cdd:smart00768   1 LWCVAKPDADEAALQAALDYACGQGADCTAIQPGGSCYSPNTVKAHASYAFNSYYQKQGqSSGACDFSGTATITTTDPST 80
X8 pfam07983
X8 domain; The X8 domain domain contains at least 6 conserved cysteine residues that ...
39-109 4.13e-11

X8 domain; The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteriztic of GPI-anchored domains.


Pssm-ID: 400371  Cd Length: 76  Bit Score: 54.91  E-value: 4.13e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1032295958  39 LWCMENPYAYFRRVISSLKWACkNGADCSPLEKGGR-----CQDLDNYRSQASYAFNDYYQK-NPIPRNCDFNGAAV 109
Cdd:pfam07983   1 LWCVAKDSVDDEDLQDLFDYAC-GQADCSGIQANGTtgkygCYSPCTVKQHLSYAFNSYYQKqGKASSACDFSGSAT 76
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH