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Conserved domains on  [gi|1032304480|gb|OAP18805|]
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hypothetical protein AXX17_AT1G16120 [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
APS2 super family cl02092
Clathrin adaptor complex, small subunit [Intracellular trafficking and secretion];
2-146 1.04e-07

Clathrin adaptor complex, small subunit [Intracellular trafficking and secretion];


The actual alignment was detected with superfamily member COG5541:

Pssm-ID: 470462  Cd Length: 187  Bit Score: 48.78  E-value: 1.04e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032304480   2 ILAVLFANSVGNVLIERFNGVPAEERLHWRSF-LVKLGADNLKGV------KNEELLVACHKSVyiVYTMLGDVSIFLVG 74
Cdd:COG5541     8 VEALLILDSQGERIYRKYYQPPHRSEGHQLVFnSVKKEKEFEKKLaektakDRESILMFYDRLV--MCKRLDDVLLYIVS 85

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1032304480  75 KDEYDELALAETIYIITAAVKDVCGKPPTERVFLDKYGRICLCLDEIVWNGLLENTDKDRIKRLIRLKPPSE 146
Cdd:COG5541    86 PMEENEPFLGQVFDEIRAALILIVKTPTDKRNVWENYDQIVLLVDETIDEGVILETKSDEIADRVPKPPNFE 157
 
Name Accession Description Interval E-value
RET3 COG5541
Vesicle coat complex COPI, zeta subunit [Posttranslational modification, protein turnover, ...
 2-146 1.04e-07

Vesicle coat complex COPI, zeta subunit [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227828  Cd Length: 187  Bit Score: 48.78  E-value: 1.04e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032304480   2 ILAVLFANSVGNVLIERFNGVPAEERLHWRSF-LVKLGADNLKGV------KNEELLVACHKSVyiVYTMLGDVSIFLVG 74
Cdd:COG5541     8 VEALLILDSQGERIYRKYYQPPHRSEGHQLVFnSVKKEKEFEKKLaektakDRESILMFYDRLV--MCKRLDDVLLYIVS 85

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1032304480  75 KDEYDELALAETIYIITAAVKDVCGKPPTERVFLDKYGRICLCLDEIVWNGLLENTDKDRIKRLIRLKPPSE 146
Cdd:COG5541    86 PMEENEPFLGQVFDEIRAALILIVKTPTDKRNVWENYDQIVLLVDETIDEGVILETKSDEIADRVPKPPNFE 157
Zeta-COP cd14829
zeta subunit of the F-COPI complex; Zeta subunit of the heterotetrameric F-COPI complex, which ...
 60-131 1.43e-03

zeta subunit of the F-COPI complex; Zeta subunit of the heterotetrameric F-COPI complex, which consists of one beta-, one gamma-, one delta-, and one zeta subunit, where beta- and gamma- subunits are related to the large adaptor protein (AP) complex subunits, and delta- and zeta- subunits are related to the medium and small AP subunits, respectively. F-COPI forms a coatomer together with the B-COPI subcomplex, which assembles with a small GTPase, ADP-ribosylation factor 1 (ARF1), playing an important role in the formation of COPI complex-coated vesicles. COPI complex-coated vesicles function in the early secretory pathway mediating the retrograde transport from the Golgi to the ER, and intra-Golgi transport.


Pssm-ID: 341433  Cd Length: 132  Bit Score: 36.37  E-value: 1.43e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1032304480  60 IVYTMLGDVSIFLVGKDEYDELALAETIYIITAAVKDVCGKPPTERVFLDKYGRICLCLDEIVWNGLLENTD 131
Cdd:cd14829    54 VVYKSNIDLTFYVVGSSDENELILASVLNCLYDALSLLLRKNVEKRALLENLDLVLLALDEIVDGGIILETD 125
 
Name Accession Description Interval E-value
RET3 COG5541
Vesicle coat complex COPI, zeta subunit [Posttranslational modification, protein turnover, ...
 2-146 1.04e-07

Vesicle coat complex COPI, zeta subunit [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227828  Cd Length: 187  Bit Score: 48.78  E-value: 1.04e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032304480   2 ILAVLFANSVGNVLIERFNGVPAEERLHWRSF-LVKLGADNLKGV------KNEELLVACHKSVyiVYTMLGDVSIFLVG 74
Cdd:COG5541     8 VEALLILDSQGERIYRKYYQPPHRSEGHQLVFnSVKKEKEFEKKLaektakDRESILMFYDRLV--MCKRLDDVLLYIVS 85

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1032304480  75 KDEYDELALAETIYIITAAVKDVCGKPPTERVFLDKYGRICLCLDEIVWNGLLENTDKDRIKRLIRLKPPSE 146
Cdd:COG5541    86 PMEENEPFLGQVFDEIRAALILIVKTPTDKRNVWENYDQIVLLVDETIDEGVILETKSDEIADRVPKPPNFE 157
Zeta-COP cd14829
zeta subunit of the F-COPI complex; Zeta subunit of the heterotetrameric F-COPI complex, which ...
 60-131 1.43e-03

zeta subunit of the F-COPI complex; Zeta subunit of the heterotetrameric F-COPI complex, which consists of one beta-, one gamma-, one delta-, and one zeta subunit, where beta- and gamma- subunits are related to the large adaptor protein (AP) complex subunits, and delta- and zeta- subunits are related to the medium and small AP subunits, respectively. F-COPI forms a coatomer together with the B-COPI subcomplex, which assembles with a small GTPase, ADP-ribosylation factor 1 (ARF1), playing an important role in the formation of COPI complex-coated vesicles. COPI complex-coated vesicles function in the early secretory pathway mediating the retrograde transport from the Golgi to the ER, and intra-Golgi transport.


Pssm-ID: 341433  Cd Length: 132  Bit Score: 36.37  E-value: 1.43e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1032304480  60 IVYTMLGDVSIFLVGKDEYDELALAETIYIITAAVKDVCGKPPTERVFLDKYGRICLCLDEIVWNGLLENTD 131
Cdd:cd14829    54 VVYKSNIDLTFYVVGSSDENELILASVLNCLYDALSLLLRKNVEKRALLENLDLVLLALDEIVDGGIILETD 125
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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