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Conserved domains on  [gi|1064111275|gb|ODU11318|]
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MAG: hypothetical protein ABS84_00200 [Rubrivivax sp. SCN 71-131]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PRK03598 super family cl35210
putative efflux pump membrane fusion protein; Provisional
24-69 1.54e-13

putative efflux pump membrane fusion protein; Provisional


The actual alignment was detected with superfamily member PRK03598:

Pssm-ID: 235136 [Multi-domain]  Cd Length: 331  Bit Score: 63.06  E-value: 1.54e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1064111275  24 ALAAWVWVHRVPADAGPLRLYGNVDIREVQLAFRQAGRVAGMAADE 69
Cdd:PRK03598   16 AAVAGGWWWYQSRQDNGLTLYGNVDIRTVNLGFRVGGRLASLAVDE 61
 
Name Accession Description Interval E-value
PRK03598 PRK03598
putative efflux pump membrane fusion protein; Provisional
24-69 1.54e-13

putative efflux pump membrane fusion protein; Provisional


Pssm-ID: 235136 [Multi-domain]  Cd Length: 331  Bit Score: 63.06  E-value: 1.54e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1064111275  24 ALAAWVWVHRVPADAGPLRLYGNVDIREVQLAFRQAGRVAGMAADE 69
Cdd:PRK03598   16 AAVAGGWWWYQSRQDNGLTLYGNVDIRTVNLGFRVGGRLASLAVDE 61
EmrA COG1566
Multidrug resistance efflux pump EmrA [Defense mechanisms];
24-69 1.60e-03

Multidrug resistance efflux pump EmrA [Defense mechanisms];


Pssm-ID: 441174 [Multi-domain]  Cd Length: 331  Bit Score: 34.64  E-value: 1.60e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1064111275  24 ALAAWVWVHRVPADAGPLRLYGNVDIREVQLAFRQAGRVAGMAADE 69
Cdd:COG1566    18 ALGLALWAAGRNGPDEPVTADGRVEARVVTVAAKVSGRVTEVLVKE 63
 
Name Accession Description Interval E-value
PRK03598 PRK03598
putative efflux pump membrane fusion protein; Provisional
24-69 1.54e-13

putative efflux pump membrane fusion protein; Provisional


Pssm-ID: 235136 [Multi-domain]  Cd Length: 331  Bit Score: 63.06  E-value: 1.54e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1064111275  24 ALAAWVWVHRVPADAGPLRLYGNVDIREVQLAFRQAGRVAGMAADE 69
Cdd:PRK03598   16 AAVAGGWWWYQSRQDNGLTLYGNVDIRTVNLGFRVGGRLASLAVDE 61
EmrA COG1566
Multidrug resistance efflux pump EmrA [Defense mechanisms];
24-69 1.60e-03

Multidrug resistance efflux pump EmrA [Defense mechanisms];


Pssm-ID: 441174 [Multi-domain]  Cd Length: 331  Bit Score: 34.64  E-value: 1.60e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1064111275  24 ALAAWVWVHRVPADAGPLRLYGNVDIREVQLAFRQAGRVAGMAADE 69
Cdd:COG1566    18 ALGLALWAAGRNGPDEPVTADGRVEARVVTVAAKVSGRVTEVLVKE 63
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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