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Conserved domains on  [gi|1080560036|gb|OFN38937|]
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peptidase C56 [Corynebacterium sp. HMSC077G07]

Protein Classification

type 1 glutamine amidotransferase domain-containing protein( domain architecture ID 10123305)

type 1 glutamine amidotransferase domain-containing protein similar to Pyrococcus furiosus deglycase PfpI that catalyzes the deglycation of the Maillard adducts formed between amino groups of proteins and reactive carbonyl groups of glyoxals (Probable)

CATH:  3.40.50.880
PubMed:  10387030
SCOP:  3001405

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
GATase1_PfpI_like cd03134
A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus ...
8-170 1.17e-83

A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus; A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.


:

Pssm-ID: 153228 [Multi-domain]  Cd Length: 165  Bit Score: 243.61  E-value: 1.17e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080560036   8 TIAVLATDGFEDSELTSPTEAVKDAGATVHVISTEE-GSIEGKNGT-KVDVDKLTSSVSADDYDALILPGGTvNADQIRI 85
Cdd:cd03134     1 KVAILAADGFEDVELTYPLYRLREAGAEVVVAGPEAgGEIQGKHGYdTVTVDLTIADVDADDYDALVIPGGT-NPDKLRR 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080560036  86 DKDAVALVKGFAAANKPIGVICHGGWILTDADVLKGRTITSYISVKTDLINAGANWVDEEVVVDGNLISSRTPADLEAFN 165
Cdd:cd03134    80 DPDAVAFVRAFAEAGKPVAAICHGPWVLISAGVVRGRKLTSYPSIKDDLINAGANWVDEEVVVDGNLITSRNPDDLPAFN 159

                  ....*
gi 1080560036 166 KALVE 170
Cdd:cd03134   160 RAILK 164
 
Name Accession Description Interval E-value
GATase1_PfpI_like cd03134
A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus ...
8-170 1.17e-83

A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus; A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.


Pssm-ID: 153228 [Multi-domain]  Cd Length: 165  Bit Score: 243.61  E-value: 1.17e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080560036   8 TIAVLATDGFEDSELTSPTEAVKDAGATVHVISTEE-GSIEGKNGT-KVDVDKLTSSVSADDYDALILPGGTvNADQIRI 85
Cdd:cd03134     1 KVAILAADGFEDVELTYPLYRLREAGAEVVVAGPEAgGEIQGKHGYdTVTVDLTIADVDADDYDALVIPGGT-NPDKLRR 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080560036  86 DKDAVALVKGFAAANKPIGVICHGGWILTDADVLKGRTITSYISVKTDLINAGANWVDEEVVVDGNLISSRTPADLEAFN 165
Cdd:cd03134    80 DPDAVAFVRAFAEAGKPVAAICHGPWVLISAGVVRGRKLTSYPSIKDDLINAGANWVDEEVVVDGNLITSRNPDDLPAFN 159

                  ....*
gi 1080560036 166 KALVE 170
Cdd:cd03134   160 RAILK 164
YajL COG0693
Protein/nucleotide deglycase, PfpI/YajL/DJ-1 family (repair of methylglyoxal-glycated proteins ...
6-170 6.95e-78

Protein/nucleotide deglycase, PfpI/YajL/DJ-1 family (repair of methylglyoxal-glycated proteins and nucleic acids) [Defense mechanisms];


Pssm-ID: 440457 [Multi-domain]  Cd Length: 170  Bit Score: 229.22  E-value: 6.95e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080560036   6 NKTIAVLATDGFEDSELTSPTEAVKDAGATVHVISTEEG-SIEGKNGTKVDVDKLTSSVSADDYDALILPGGTVNADQIR 84
Cdd:COG0693     2 MKKVLILLTDGFEDEELTVPYDALREAGAEVDVASPEGGpPVTSKHGITVTADKTLDDVDPDDYDALVLPGGHGAPDDLR 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080560036  85 IDKDAVALVKGFAAANKPIGVICHGGWILTDADVLKGRTITSYISVKTDLINAGANWVDEEVVVDGNLISSRTPADLEAF 164
Cdd:COG0693    82 EDPDVVALVREFYEAGKPVAAICHGPAVLAAAGLLKGRKVTSFPNIEDDLKNAGATYVDEEVVVDGNLITSRGPGDAPAF 161

                  ....*.
gi 1080560036 165 NKALVE 170
Cdd:COG0693   162 ARALLE 167
DJ-1_PfpI pfam01965
DJ-1/PfpI family; The family includes the protease PfpI. This domain is also found in ...
7-170 1.82e-58

DJ-1/PfpI family; The family includes the protease PfpI. This domain is also found in transcriptional regulators.


Pssm-ID: 396514 [Multi-domain]  Cd Length: 165  Bit Score: 179.76  E-value: 1.82e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080560036   7 KTIAVLATDGFEDSELTSPTEAVKDAGATVHVISTEEGSIEGKNGTKVDVDKLTSSVSADDYDALILPGGTVNADQIRID 86
Cdd:pfam01965   1 KKVLVLLADGFEDIELIYPADVLRRAGIKVTVVSVDGGEVKGSRGVKVTVDASLDDVKPDDYDALVLPGGRAGPERLRDN 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080560036  87 KDAVALVKGFAAANKPIGVICHGGWILTDADVLKGRTITSYISVKTDLINAGANWVDEEVVVDGNLISSRTPADLEAFNK 166
Cdd:pfam01965  81 EKLVEFVKDFYEKGKPVAAICHGPQVLAAAGVLKGRKVTSHPAVKDDLINAGATYVDKPVVVDGNLVTSRGPGDAPEFAL 160

                  ....
gi 1080560036 167 ALVE 170
Cdd:pfam01965 161 EILE 164
PfpI TIGR01382
intracellular protease, PfpI family; The member of this family from Pyrococcus horikoshii has ...
9-170 2.41e-58

intracellular protease, PfpI family; The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs. [Protein fate, Degradation of proteins, peptides, and glycopeptides]


Pssm-ID: 273591 [Multi-domain]  Cd Length: 166  Bit Score: 179.54  E-value: 2.41e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080560036   9 IAVLATDGFEDSELTSPTEAVKDAGATVHVISTEEGSIEGKNGTKVDVDKLTSSVSADDYDALILPGGTVnADQIRIDKD 88
Cdd:TIGR01382   2 LLVLTTDEFEDSELLYPLDRLREAGHEVDTVSKEAGTTVGKHGYSVTVDATIDEVNPEEYDALVIPGGRA-PEYLRLNNK 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080560036  89 AVALVKGFAAANKPIGVICHGGWILTDADVLKGRTITSYISVKTDLINAGANWVDEE-VVVDGNLISSRTPADLEAFNKA 167
Cdd:TIGR01382  81 AVRLVREFVEKGKPVAAICHGPQLLISAGVLRGKKLTSYPAIIDDVKNAGAEYVDIEvVVVDGNLVTSRVPDDLPAFNRE 160

                  ...
gi 1080560036 168 LVE 170
Cdd:TIGR01382 161 FLK 163
PRK11780 PRK11780
isoprenoid biosynthesis glyoxalase ElbB;
61-159 4.73e-09

isoprenoid biosynthesis glyoxalase ElbB;


Pssm-ID: 236980  Cd Length: 217  Bit Score: 53.25  E-value: 4.73e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080560036  61 SSVSADDYDALILPGG----------TVNADQIRIDKDAVALVKGFAAANKPIGVIC----------HGGWILT---DAD 117
Cdd:PRK11780   79 AEADAEDFDALIVPGGfgaaknlsnfAVKGAECTVNPDVKALVRAFHQAGKPIGFICiapamlpkilGAGVKLTignDED 158
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1080560036 118 VlkgrtitsyisvkTDLINA-GANWVD---EEVVVD-GNLISSrTPA 159
Cdd:PRK11780  159 T-------------AAAIEKmGGEHVDcpvDDIVVDeENKVVT-TPA 191
 
Name Accession Description Interval E-value
GATase1_PfpI_like cd03134
A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus ...
8-170 1.17e-83

A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus; A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.


Pssm-ID: 153228 [Multi-domain]  Cd Length: 165  Bit Score: 243.61  E-value: 1.17e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080560036   8 TIAVLATDGFEDSELTSPTEAVKDAGATVHVISTEE-GSIEGKNGT-KVDVDKLTSSVSADDYDALILPGGTvNADQIRI 85
Cdd:cd03134     1 KVAILAADGFEDVELTYPLYRLREAGAEVVVAGPEAgGEIQGKHGYdTVTVDLTIADVDADDYDALVIPGGT-NPDKLRR 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080560036  86 DKDAVALVKGFAAANKPIGVICHGGWILTDADVLKGRTITSYISVKTDLINAGANWVDEEVVVDGNLISSRTPADLEAFN 165
Cdd:cd03134    80 DPDAVAFVRAFAEAGKPVAAICHGPWVLISAGVVRGRKLTSYPSIKDDLINAGANWVDEEVVVDGNLITSRNPDDLPAFN 159

                  ....*
gi 1080560036 166 KALVE 170
Cdd:cd03134   160 RAILK 164
YajL COG0693
Protein/nucleotide deglycase, PfpI/YajL/DJ-1 family (repair of methylglyoxal-glycated proteins ...
6-170 6.95e-78

Protein/nucleotide deglycase, PfpI/YajL/DJ-1 family (repair of methylglyoxal-glycated proteins and nucleic acids) [Defense mechanisms];


Pssm-ID: 440457 [Multi-domain]  Cd Length: 170  Bit Score: 229.22  E-value: 6.95e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080560036   6 NKTIAVLATDGFEDSELTSPTEAVKDAGATVHVISTEEG-SIEGKNGTKVDVDKLTSSVSADDYDALILPGGTVNADQIR 84
Cdd:COG0693     2 MKKVLILLTDGFEDEELTVPYDALREAGAEVDVASPEGGpPVTSKHGITVTADKTLDDVDPDDYDALVLPGGHGAPDDLR 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080560036  85 IDKDAVALVKGFAAANKPIGVICHGGWILTDADVLKGRTITSYISVKTDLINAGANWVDEEVVVDGNLISSRTPADLEAF 164
Cdd:COG0693    82 EDPDVVALVREFYEAGKPVAAICHGPAVLAAAGLLKGRKVTSFPNIEDDLKNAGATYVDEEVVVDGNLITSRGPGDAPAF 161

                  ....*.
gi 1080560036 165 NKALVE 170
Cdd:COG0693   162 ARALLE 167
DJ-1_PfpI pfam01965
DJ-1/PfpI family; The family includes the protease PfpI. This domain is also found in ...
7-170 1.82e-58

DJ-1/PfpI family; The family includes the protease PfpI. This domain is also found in transcriptional regulators.


Pssm-ID: 396514 [Multi-domain]  Cd Length: 165  Bit Score: 179.76  E-value: 1.82e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080560036   7 KTIAVLATDGFEDSELTSPTEAVKDAGATVHVISTEEGSIEGKNGTKVDVDKLTSSVSADDYDALILPGGTVNADQIRID 86
Cdd:pfam01965   1 KKVLVLLADGFEDIELIYPADVLRRAGIKVTVVSVDGGEVKGSRGVKVTVDASLDDVKPDDYDALVLPGGRAGPERLRDN 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080560036  87 KDAVALVKGFAAANKPIGVICHGGWILTDADVLKGRTITSYISVKTDLINAGANWVDEEVVVDGNLISSRTPADLEAFNK 166
Cdd:pfam01965  81 EKLVEFVKDFYEKGKPVAAICHGPQVLAAAGVLKGRKVTSHPAVKDDLINAGATYVDKPVVVDGNLVTSRGPGDAPEFAL 160

                  ....
gi 1080560036 167 ALVE 170
Cdd:pfam01965 161 EILE 164
PfpI TIGR01382
intracellular protease, PfpI family; The member of this family from Pyrococcus horikoshii has ...
9-170 2.41e-58

intracellular protease, PfpI family; The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs. [Protein fate, Degradation of proteins, peptides, and glycopeptides]


Pssm-ID: 273591 [Multi-domain]  Cd Length: 166  Bit Score: 179.54  E-value: 2.41e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080560036   9 IAVLATDGFEDSELTSPTEAVKDAGATVHVISTEEGSIEGKNGTKVDVDKLTSSVSADDYDALILPGGTVnADQIRIDKD 88
Cdd:TIGR01382   2 LLVLTTDEFEDSELLYPLDRLREAGHEVDTVSKEAGTTVGKHGYSVTVDATIDEVNPEEYDALVIPGGRA-PEYLRLNNK 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080560036  89 AVALVKGFAAANKPIGVICHGGWILTDADVLKGRTITSYISVKTDLINAGANWVDEE-VVVDGNLISSRTPADLEAFNKA 167
Cdd:TIGR01382  81 AVRLVREFVEKGKPVAAICHGPQLLISAGVLRGKKLTSYPAIIDDVKNAGAEYVDIEvVVVDGNLVTSRVPDDLPAFNRE 160

                  ...
gi 1080560036 168 LVE 170
Cdd:TIGR01382 161 FLK 163
GATase1_PfpI_1 cd03169
Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins ...
9-170 1.00e-40

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus; Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.


Pssm-ID: 153243 [Multi-domain]  Cd Length: 180  Bit Score: 135.08  E-value: 1.00e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080560036   9 IAVLATDGFEDSELTSPTEAVKDAGATVHVIS--------------TEEG---SIEgKNGTKVDVDKLTSSVSADDYDAL 71
Cdd:cd03169     2 ILILTGDFVEDYEVMVPFQALQEVGHEVDVVApgkkkgdtvvtaihDFPGwqtYTE-KPGHRFAVTADFDEVDPDDYDAL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080560036  72 ILPGGTVnADQIRIDKDAVALVKGFAAANKPIGVICHGGWILTDADVLKGRTITSYISVKTDLINAGANWVDEEVVVDGN 151
Cdd:cd03169    81 VIPGGRA-PEYLRLDEKVLAIVRHFAEANKPVAAICHGPQILAAAGVLKGRRCTAYPACKPEVELAGGTVVDDGVVVDGN 159
                         170
                  ....*....|....*....
gi 1080560036 152 LISSRTPADLEAFNKALVE 170
Cdd:cd03169   160 LVTAQAWPDHPAFLREFLK 178
GATase1_DJ-1 cd03135
Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1; Type 1 glutamine ...
9-170 1.10e-34

Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1; Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly conserved cysteine located at the nucelophile elbow region typical of these domains. This cysteine been proposed to be a site of regulation of DJ-1 activity by oxidation. DJ-1 is a dimeric enzyme.


Pssm-ID: 153229 [Multi-domain]  Cd Length: 163  Bit Score: 119.20  E-value: 1.10e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080560036   9 IAVLATDGFEDSELTSPTEAVKDAGATVHVISTEEG-SIEGKNGTKVDVDKLTSSVSADDYDALILPGGTVNADQIRIDK 87
Cdd:cd03135     1 VLVILADGFEEIEAVTPVDVLRRAGIEVTTASLEKKlAVGSSHGIKVKADKTLSDVNLDDYDAIVIPGGLPGAQNLADNE 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080560036  88 DAVALVKGFAAANKPIGVICHGGWILTDADVLKGRTITSYISVKTDLinAGANWVDEEVVVDGNLISSRTPADLEAFNKA 167
Cdd:cd03135    81 KLIKLLKEFNAKGKLIAAICAAPAVLAKAGLLKGKKATCYPGFEDKL--GGANYVDEPVVVDGNIITSRGPGTAFEFALK 158

                  ...
gi 1080560036 168 LVE 170
Cdd:cd03135   159 IVE 161
GATase1 cd01653
Type 1 glutamine amidotransferase (GATase1)-like domain; Type 1 glutamine amidotransferase ...
9-113 2.10e-19

Type 1 glutamine amidotransferase (GATase1)-like domain; Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. For Pyrococcus horikoshii PH1704, the Cys of the nucleophile elbow together with a different His and, a Glu from an adjacent monomer form a catalytic triad different from the typical GATase1 triad. The E. coli HP-II C-terminal domain, S. meliloti Rm1021 ThuA and the A4 beta-galactosidase middle domain lack the catalytic triad typical GATaseI domains. GATase1-like domains can occur either as single polypeptides, as in Class I glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase.


Pssm-ID: 153210 [Multi-domain]  Cd Length: 115  Bit Score: 78.79  E-value: 2.10e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080560036   9 IAVLATDGFEDSELTSPTEAVKDAGATVHVISTEEGSIEgkngtkvdvdkltSSVSADDYDALILPGGTVNADQIRIDKD 88
Cdd:cd01653     1 VAVLLFPGFEELELASPLDALREAGAEVDVVSPDGGPVE-------------SDVDLDDYDGLILPGGPGTPDDLARDEA 67
                          90       100
                  ....*....|....*....|....*
gi 1080560036  89 AVALVKGFAAANKPIGVICHGGWIL 113
Cdd:cd01653    68 LLALLREAAAAGKPILGICLGAQLL 92
GAT_1 cd03128
Type 1 glutamine amidotransferase (GATase1)-like domain; Type 1 glutamine amidotransferase ...
9-113 1.18e-17

Type 1 glutamine amidotransferase (GATase1)-like domain; Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase (CPSase), cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. For Pyrococcus horikoshii PH1704, the Cys of the nucleophile elbow together with a different His and, a Glu from an adjacent monomer form a catalytic triad different from the typical GATase1 triad. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad of typical GATase1 domains, by having a Ser in place of the reactive Cys at the nucleophile elbow. The E. coli HP-II C-terminal domain, S. meliloti Rm1021 ThuA and the A4 beta-galactosidase middle domain lack the catalytic triad typical GATaseI domains. GATase1-like domains can occur either as single polypeptides, as in Class I glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Peptidase E has a circular permutation in the common core of a typical GTAse1 domain.


Pssm-ID: 153222 [Multi-domain]  Cd Length: 92  Bit Score: 73.39  E-value: 1.18e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080560036   9 IAVLATDGFEDSELTSPTEAVKDAGATVHVISTEEGSIEgkngtkvdvdkltSSVSADDYDALILPGGTVNADQIRIDKD 88
Cdd:cd03128     1 VAVLLFGGSEELELASPLDALREAGAEVDVVSPDGGPVE-------------SDVDLDDYDGLILPGGPGTPDDLAWDEA 67
                          90       100
                  ....*....|....*....|....*
gi 1080560036  89 AVALVKGFAAANKPIGVICHGGWIL 113
Cdd:cd03128    68 LLALLREAAAAGKPVLGICLGAQLL 92
GATase1_Hsp31_like cd03141
Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to ...
16-170 5.41e-15

Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein; Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. For Ydr533c a catalytic triad forms from the conserved Cys together with a different His and Glu from that of the typical GATase1domain. Ydr533c protein and EcHsp31 are homodimers.


Pssm-ID: 153235 [Multi-domain]  Cd Length: 221  Bit Score: 69.51  E-value: 5.41e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080560036  16 GFEDSELTSPTEAVKDAGATVHVISTEEG-------SIEGKNGTKVDVDKLT-------------SSVSADDYDALILPG 75
Cdd:cd03141    19 GLWLEELAHPYDVFTEAGYEVDFASPKGGkvpldprSLDAEDDDDASVFDNDeefkkklantkklSDVDPSDYDAIFIPG 98
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080560036  76 GT------VNadqiriDKDAVALVKGFAAANKPIGVICHGGWIL---TDAD---VLKGRTITSY---------------I 128
Cdd:cd03141    99 GHgpmfdlPD------NPDLQDLLREFYENGKVVAAVCHGPAALlnvKLSDgksLVAGKTVTGFtneeeeaaglkkvvpF 172
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1080560036 129 SVKTDLINAGANWV-----DEEVVVDGNLISSRTPADLEAFNKALVE 170
Cdd:cd03141   173 LLEDELKELGANYVkaepwAEFVVVDGRLITGQNPASAAAVAEALVK 219
GATase1_PfpI_2 cd03139
Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins ...
9-155 5.29e-14

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus; Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.


Pssm-ID: 153233 [Multi-domain]  Cd Length: 183  Bit Score: 66.03  E-value: 5.29e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080560036   9 IAVLATDGFEDSELTSPTE-----AVKDAGATVHVISTEEGSIEGKNGTKVDVDklTSSVSADDYDALILPGGTVNADQI 83
Cdd:cd03139     1 VGILLFPGVEVLDVIGPYEvfgraPRLAAPFEVFLVSETGGPVSSRSGLTVLPD--TSFADPPDLDVLLVPGGGGTRALV 78
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1080560036  84 RiDKDAVALVKGFAAANKPIGVICHGGWILTDADVLKGRTITSYISVKTDLINAGAN-WVDEEVVVDGNLISS 155
Cdd:cd03139    79 N-DPALLDFIRRQAARAKYVTSVCTGALLLAAAGLLDGRRATTHWAAIDWLKEFGAIvVVDARWVVDGNIWTS 150
GATase1_PfpI_3 cd03140
Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins ...
9-154 9.07e-12

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus; Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.


Pssm-ID: 153234 [Multi-domain]  Cd Length: 170  Bit Score: 59.93  E-value: 9.07e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080560036   9 IAVLATDGFEDSE---LTSptEAVKDAGATVHVISTEEGSIEGKNGTKVDVDKLTSSVSADDYDALILPGGtvNADQIRI 85
Cdd:cd03140     1 IAVFLTDEFADWEgayLAA--LLNSYEGFEVRTVSPTGEPVTSIGGLRVVPDYSLDDLPPEDYDLLILPGG--DSWDNPE 76
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1080560036  86 DKDAVALVKGFAAANKPIGVICHGGWILTDADVLKGRTITS----YISVKTDLINAGANWVDEEVVVDGNLIS 154
Cdd:cd03140    77 APDLAGLVRQALKQGKPVAAICGATLALARAGLLNNRKHTSnsldFLKAHAPYYGGAEYYDEPQAVSDGNLIT 149
PRK11780 PRK11780
isoprenoid biosynthesis glyoxalase ElbB;
61-159 4.73e-09

isoprenoid biosynthesis glyoxalase ElbB;


Pssm-ID: 236980  Cd Length: 217  Bit Score: 53.25  E-value: 4.73e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080560036  61 SSVSADDYDALILPGG----------TVNADQIRIDKDAVALVKGFAAANKPIGVIC----------HGGWILT---DAD 117
Cdd:PRK11780   79 AEADAEDFDALIVPGGfgaaknlsnfAVKGAECTVNPDVKALVRAFHQAGKPIGFICiapamlpkilGAGVKLTignDED 158
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1080560036 118 VlkgrtitsyisvkTDLINA-GANWVD---EEVVVD-GNLISSrTPA 159
Cdd:PRK11780  159 T-------------AAAIEKmGGEHVDcpvDDIVVDeENKVVT-TPA 191
GATase1_catalase cd03132
Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several ...
7-104 1.10e-08

Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases; Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; Catalase-3 is associated with growing conditions. HP-II is produced in stationary phase. Catalase-1 is induced by ethanol and heat shock. Catalase-3 is induced under stress conditions such a hydrogen peroxide, paraquat, cadmium, heat shock, uric acid and nitrate treatment.


Pssm-ID: 153226  Cd Length: 142  Bit Score: 51.11  E-value: 1.10e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080560036   7 KTIAVLATDGFEDSELTSPTEAVKDAGATVHVISTEEGSIEGKNGTKVDVDKLTSSVSADDYDALILPGGTVNADQIRID 86
Cdd:cd03132     2 RKVGILVADGVDAAELSALKAALKAAGANVKVVAPTLGGVVDSDGKTLEVDQTYAGAPSVLFDAVVVPGGAEAAFALAPS 81
                          90
                  ....*....|....*....
gi 1080560036  87 KDAVALVK-GFAAAnKPIG 104
Cdd:cd03132    82 GRALHFVTeAFKHG-KPIG 99
GATase1_AraC_1 cd03137
AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like ...
9-155 3.27e-08

AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain; A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.


Pssm-ID: 153231 [Multi-domain]  Cd Length: 187  Bit Score: 50.58  E-value: 3.27e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080560036   9 IAVLATDGFEDSELTSPTE----AVKDAGA---TVHVISTEEGSIEGKNGTKVDVDKLTSSvsADDYDALILPGGTVnAD 81
Cdd:cd03137     1 VAVLVFPGVSLLDLSGPAEvfgeANRALGPpayELRVCSPEGGPVRSSSGLSLVADAGLDA--LAAADTVIVPGGPD-VD 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080560036  82 QIRIDKDAVALVKGFAAANKPIGVICHGGWILTDADVLKGRTITS-----------YISVKtdlinaganwVDEEV--VV 148
Cdd:cd03137    78 GRPPPPALLAALRRAAARGARVASVCTGAFVLAEAGLLDGRRATThwayaedlarrFPAVR----------VDPDVlyVD 147

                  ....*..
gi 1080560036 149 DGNLISS 155
Cdd:cd03137   148 DGNVWTS 154
GATase1_ES1 cd03133
Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1; Type 1 ...
61-107 3.47e-07

Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1; Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.


Pssm-ID: 153227  Cd Length: 213  Bit Score: 48.00  E-value: 3.47e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1080560036  61 SSVSADDYDALILPGG----------TVNADQIRIDKDAVALVKGFAAANKPIGVIC 107
Cdd:cd03133    76 AKLKAADFDALIFPGGfgaaknlsdfAVKGADCTVNPEVERLVREFHQAGKPIGAIC 132
katE PRK11249
hydroperoxidase II; Provisional
3-90 9.28e-05

hydroperoxidase II; Provisional


Pssm-ID: 236886 [Multi-domain]  Cd Length: 752  Bit Score: 41.95  E-value: 9.28e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080560036   3 DLTNKTIAVLATDGFEDSELTSPTEAVKDAGATVHVISTEEGSIEGKNGTKVDVDKLTSSVSADDYDALILPGGTVNADQ 82
Cdd:PRK11249  594 DIKGRKVAILLNDGVDAADLLAILKALKAKGVHAKLLYPRMGEVTADDGTVLPIAATFAGAPSLTFDAVIVPGGKANIAD 673

                  ....*...
gi 1080560036  83 IRIDKDAV 90
Cdd:PRK11249  674 LADNGDAR 681
GATase1_AraC_2 cd03138
AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like ...
9-155 9.32e-05

AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain; A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.


Pssm-ID: 153232 [Multi-domain]  Cd Length: 195  Bit Score: 41.09  E-value: 9.32e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080560036   9 IAVLATDGFEDSELTSPTEAVKDAGA------------TVHVISTEEGSIEGKNGTKVDVDKLTSSVsaDDYDALILPG- 75
Cdd:cd03138     1 VTLLAYPGALASSLAGLLDLLRAANRlarrqqggappfEVRLVSLDGGPVLLAGGILILPDATLADV--PAPDLVIVPGl 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080560036  76 -GTVNADQIRIDKDAVALVKGFAAANKPIGVICHGGWILTDADVLKGRTIT-----------SYISVKTDLinaganwvD 143
Cdd:cd03138    79 gGDPDELLLADNPALIAWLRRQHANGATVAAACTGVFLLAEAGLLDGRRATthwwlapqfrrRFPKVRLDP--------D 150
                         170
                  ....*....|..
gi 1080560036 144 EEVVVDGNLISS 155
Cdd:cd03138   151 RVVVTDGNLITA 162
PRK11574 PRK11574
protein deglycase YajL;
16-158 1.41e-04

protein deglycase YajL;


Pssm-ID: 183210 [Multi-domain]  Cd Length: 196  Bit Score: 40.53  E-value: 1.41e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080560036  16 GFEDSELTSPTEAVKDAGATVHVIST-EEGSIE--GKNGTKVDVDKLTSSVSADDYDALILPGGTVNADQIRIDKDAVAL 92
Cdd:PRK11574   12 GSEETEAVTTIDLLVRGGIKVTTASVaSDGNLEitCSRGVKLLADAPLVEVADGDFDVIVLPGGIKGAECFRDSPLLVET 91
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1080560036  93 VKGFAAANKPIGVICHG-GWILTDADVLKGRTITSYISVKTDLinAGANWVDEEVVVDG--NLISSRTP 158
Cdd:PRK11574   92 VRQFHRSGRIVAAICAApATVLVPHDLFPIGNMTGFPTLKDKI--PAEQWQDKRVVWDArvNLLTSQGP 158
GATase1_AraC_ArgR_like cd03136
AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase ...
35-125 1.51e-03

AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain; A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.


Pssm-ID: 153230 [Multi-domain]  Cd Length: 185  Bit Score: 37.57  E-value: 1.51e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080560036  35 TVHVISTEEGSIEGKNGTKVDVDKLTSSVsaDDYDALILPGGtvNADQIRIDKDAVALVKGFAAANKPIGVICHGGWILT 114
Cdd:cd03136    34 RWRVLSLDGAPVTSSNGLRVAPDAALEDA--PPLDYLFVVGG--LGARRAVTPALLAWLRRAARRGVALGGIDTGAFLLA 109
                          90
                  ....*....|.
gi 1080560036 115 DADVLKGRTIT 125
Cdd:cd03136   110 RAGLLDGRRAT 120
GATase1_FGAR_AT cd01740
Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ...
28-122 3.86e-03

Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase; Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site


Pssm-ID: 153211 [Multi-domain]  Cd Length: 238  Bit Score: 36.44  E-value: 3.86e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080560036  28 AVKDAGATVhvisteegsiegkngtkVDV---DKLTSSVSADDYDALILPGGTVNADQIR------IDKDAVALVKGFAA 98
Cdd:cd01740    18 AFELAGFEA-----------------EDVwhnDLLAGRKDLDDYDGVVLPGGFSYGDYLRagaiaaASPLLMEEVKEFAE 80
                          90       100
                  ....*....|....*....|....
gi 1080560036  99 ANKPIGVICHGGWILTDADVLKGR 122
Cdd:cd01740    81 RGGLVLGICNGFQILVELGLLPGA 104
GATase1_2 cd01745
Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain; This group ...
26-109 7.88e-03

Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain; This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase.


Pssm-ID: 153216 [Multi-domain]  Cd Length: 189  Bit Score: 35.24  E-value: 7.88e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080560036  26 TEAVKDAGATVHVISTEEGSIEgkngTKVDVDKLtssvsaddyDALILPGG-------------TVNADQIRiDKDA--V 90
Cdd:cd01745    25 VDAVRKAGGLPVLLPPVDDEED----LEQYLELL---------DGLLLTGGgdvdpplygeephPELGPIDP-ERDAfeL 90
                          90
                  ....*....|....*....
gi 1080560036  91 ALVKGFAAANKPIGVICHG 109
Cdd:cd01745    91 ALLRAALERGKPILGICRG 109
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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