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preprotein translocase subunit SecY [Eikenella sp. HMSC061C02]
Protein Classification
preprotein translocase subunit SecY ( domain architecture ID 11415179 )
preprotein translocase subunit SecY plays an essential role to facilitate protein translocation; it is a component of the SecYEG translocon, or protein translocation pore, which is driven by the ATPase SecA
List of domain hits
Name
Accession
Description
Interval
E-value
SecY
COG0201 Preprotein translocase subunit SecY [Intracellular trafficking, secretion, and vesicular ...
13-417
0e+00
Preprotein translocase subunit SecY [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 439971
Cd Length: 427
Bit Score: 565.48
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080581929 13 G A LIV F R V G A HIPVPG VNA AALA NS F KEGNA G I LG M LN L FSGG S L E RFSIFA I GIMPYI S ASII I QL VAE V L P S L KA L K K 92
Cdd:COG0201 23 G I LIV Y R L G S HIPVPG IDP AALA QL F AQQSG G L LG L LN M FSGG A L S RFSIFA L GIMPYI T ASII M QL LTV V I P K L EE L Q K 102
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080581929 93 EGE A GR RTL T K YTR WG T LLV A V --- VQAFAAAAVVYQRPD LV VIGRTE FY ISAITC L VT GTMFLMWLGEQ M TERGIGNG V 169
Cdd:COG0201 103 EGE E GR KKI T Q YTR YL T VVL A L lqa FGIALGLRSGPPGGG LV IDPGIL FY LLTVIT L TA GTMFLMWLGEQ I TERGIGNG I 182
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080581929 170 SL L I T AGIVA A LPSA VSNLLN L AI TG ASGYGTI L FV L FGG L CL I YI VV YI E SG QR K IP IH YA R R QI G N R IVQ GQ K T H LP F 249
Cdd:COG0201 183 SL I I F AGIVA R LPSA LAQIFE L VR TG ELSILLL L LL L VLA L AV I AF VV FV E QA QR R IP VQ YA K R VV G R R MYG GQ S T Y LP L 262
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080581929 250 K I NMAGVIP P IFASS VI LFP SQ I IGWLD krv DGNAFVDF I SAN LSPG KS LY L V VFTAA IIFF C YFYTA LV F S P R E M A E NL 329
Cdd:COG0201 263 K V NMAGVIP I IFASS LL LFP AT I AQFFG --- GSSGWLQW I ANY LSPG SP LY I V LYALL IIFF T YFYTA IT F N P E E I A D NL 339
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080581929 330 KKSG A F V PGIRPG EQ T SN YL E KV VM RLT FF GA LYITI I CLI PE FVTGVL G I PF HL GGTSLLI L V V V TM D FGT Q VA S YRMN 409
Cdd:COG0201 340 KKSG G F I PGIRPG KP T AE YL D KV LT RLT LV GA IFLAL I AIL PE ILGAIT G V PF YF GGTSLLI V V G V AL D TMK Q IE S QLLM 419
....*...
gi 1080581929 410 QQ YE HLMR 417
Cdd:COG0201 420 RH YE GFLK 427
Name
Accession
Description
Interval
E-value
SecY
COG0201 Preprotein translocase subunit SecY [Intracellular trafficking, secretion, and vesicular ...
13-417
0e+00
Preprotein translocase subunit SecY [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 439971
Cd Length: 427
Bit Score: 565.48
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080581929 13 G A LIV F R V G A HIPVPG VNA AALA NS F KEGNA G I LG M LN L FSGG S L E RFSIFA I GIMPYI S ASII I QL VAE V L P S L KA L K K 92
Cdd:COG0201 23 G I LIV Y R L G S HIPVPG IDP AALA QL F AQQSG G L LG L LN M FSGG A L S RFSIFA L GIMPYI T ASII M QL LTV V I P K L EE L Q K 102
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080581929 93 EGE A GR RTL T K YTR WG T LLV A V --- VQAFAAAAVVYQRPD LV VIGRTE FY ISAITC L VT GTMFLMWLGEQ M TERGIGNG V 169
Cdd:COG0201 103 EGE E GR KKI T Q YTR YL T VVL A L lqa FGIALGLRSGPPGGG LV IDPGIL FY LLTVIT L TA GTMFLMWLGEQ I TERGIGNG I 182
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080581929 170 SL L I T AGIVA A LPSA VSNLLN L AI TG ASGYGTI L FV L FGG L CL I YI VV YI E SG QR K IP IH YA R R QI G N R IVQ GQ K T H LP F 249
Cdd:COG0201 183 SL I I F AGIVA R LPSA LAQIFE L VR TG ELSILLL L LL L VLA L AV I AF VV FV E QA QR R IP VQ YA K R VV G R R MYG GQ S T Y LP L 262
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080581929 250 K I NMAGVIP P IFASS VI LFP SQ I IGWLD krv DGNAFVDF I SAN LSPG KS LY L V VFTAA IIFF C YFYTA LV F S P R E M A E NL 329
Cdd:COG0201 263 K V NMAGVIP I IFASS LL LFP AT I AQFFG --- GSSGWLQW I ANY LSPG SP LY I V LYALL IIFF T YFYTA IT F N P E E I A D NL 339
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080581929 330 KKSG A F V PGIRPG EQ T SN YL E KV VM RLT FF GA LYITI I CLI PE FVTGVL G I PF HL GGTSLLI L V V V TM D FGT Q VA S YRMN 409
Cdd:COG0201 340 KKSG G F I PGIRPG KP T AE YL D KV LT RLT LV GA IFLAL I AIL PE ILGAIT G V PF YF GGTSLLI V V G V AL D TMK Q IE S QLLM 419
....*...
gi 1080581929 410 QQ YE HLMR 417
Cdd:COG0201 420 RH YE GFLK 427
SecY
pfam00344 SecY;
61-399
3.19e-129
SecY;
Pssm-ID: 459771
Cd Length: 322
Bit Score: 375.24
E-value: 3.19e-129
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080581929 61 S I FA I GIMPYI S ASII I QL VA e V LP SL KA LKKEGE A GR RTLTK YTR WG T LLV A VV QA FAAAAVV yqrpd L V VI G RTE FY I 140
Cdd:pfam00344 1 S L FA L GIMPYI T ASII M QL LG - V VI SL EE LKKEGE E GR KKINQ YTR YL T VVL A LI QA IGIVLSL ----- G V YG G GGG FY L 74
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080581929 141 SAITC L VT GTMFLMWLGEQ M T ER GIGNG V SL L I T AGIVA A LPSA V S NL L - N L AIT GA SGYGTI L FV L FGG L CL I YI VVY I 219
Cdd:pfam00344 75 LIVLQ L TA GTMFLMWLGEQ I T KY GIGNG I SL I I F AGIVA R LPSA F S GA L i A L FRL GA RSILPN L LL L IIT L AV I AL VVY L 154
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080581929 220 ESGQ R K IP IH YA R R QI G nrivq GQ KTH LP F K I N M AGVIP P IFASS VIL FP SQ I IGWLD krvdgnaf VD FI S A N L S PG KS L 299
Cdd:pfam00344 155 QQAE R R IP VQ YA K R VV G ----- GQ SSY LP L K L N Y AGVIP I IFASS LLS FP AT I AQFFG -------- LQ FI A A A L D PG SP L 221
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080581929 300 Y L V VFTAA IIFF C YFYTA LV F S P REM AENLKK S G A F V PGIRPG EQ T SN YL EK V VM R L T FF GAL YIT II CLI P EFVTGVL G 379
Cdd:pfam00344 222 Y T V LYALL IIFF A YFYTA IT F N P KDI AENLKK Q G G F I PGIRPG KP T AK YL DR V IP R I T LL GAL FLG II AVL P DLLGALT G 301
330 340
....*....|....*....|
gi 1080581929 380 I PF HL GGTSLLI L V V V TM D F 399
Cdd:pfam00344 302 V PF GF GGTSLLI V V G V AL D T 321
3a0501s007
TIGR00967 preprotein translocase, SecY subunit; Members of this protein family are the SecY component of ...
13-412
3.66e-116
preprotein translocase, SecY subunit; Members of this protein family are the SecY component of the SecYEG translocon, or protein translocation pore, which is driven by the ATPase SecA. This model does not discriminate bacterial from archaeal forms. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273369
Cd Length: 410
Bit Score: 345.43
E-value: 3.66e-116
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080581929 13 G A L IV FR V G AH IP V PG VN A A A LA N SF ke GNAG I L G M LN L FSGG S L ERF SIFA I GI M PYI S ASIIIQ - L VAE V L P S L KAL K 91
Cdd:TIGR00967 9 G L L VL FR I G TF IP I PG ID A S A FQ N LI -- QQNP I F G L LN T FSGG A L GQI SIFA L GI S PYI T ASIIIQ l L TGD V P P L L QLQ K 86
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080581929 92 KEGE A GRR TLTKY TR WG TL LV A VV Q AFAAAAVVYQR pd L V VIGRTE FY ISAITC L V TG T M FL MWLGEQ M T ER GIGNG V SL 171
Cdd:TIGR00967 87 KEGE I GRR KINQL TR YL TL IL A FI Q SLGIVMTGMYG -- Y V GDPGAF FY LLIVIQ L T TG S M IV MWLGEQ I T KY GIGNG I SL 164
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080581929 172 LI T AGI V A AL PS AVSNLLNLAITGASGYGTI ------ L FV L FGGLCLIYI VV YIESGQ RKIPI HY A R RQ I G N R iv QG Q K T 245
Cdd:TIGR00967 165 LI F AGI A A TI PS GLLQPTEVRQSKVRDLISF lqnlpf L LY L IATIIVFAV VV FVQQAR RKIPI QS A K RQ G G R R -- GS Q S T 242
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080581929 246 H LP F K I N M AGVIP P IFAS SVILF P SQ I IGW L DKRVD G NA F VDF I SA n LS PGKSLYLVVFTAA IIFF CY FY TA L VFS P RE M 325
Cdd:TIGR00967 243 Y LP L K L N Y AGVIP V IFAS ALLSN P AT I SQF L NSNQG G AW F LNP I LS - LS LSDPIGAILYLIL IIFF SF FY VE L QLN P ED M 321
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080581929 326 A E NLKK S G A F V PGIRPG EQ T SN YL EK V VM RLTF F G A L YITI I C L I P E F VTGVL G I P -- FH LGGTSLLI L V V V TM D FGT Q V 403
Cdd:TIGR00967 322 A K NLKK Q G M F I PGIRPG KM T EK YL KR V IP RLTF V G S L FLGL I A L L P N F LGAIG G L P ts KG LGGTSLLI V V G V AI D TYK Q L 401
....*....
gi 1080581929 404 A S YRMNQQ Y 412
Cdd:TIGR00967 402 E S ELISRN Y 410
secY
CHL00161 preprotein translocase subunit SecY; Validated
13-417
8.92e-91
preprotein translocase subunit SecY; Validated
Pssm-ID: 214379
Cd Length: 417
Bit Score: 280.73
E-value: 8.92e-91
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080581929 13 G A L IVF R V G AH IPVPG VNAAA L AN S FK eg N AGI L GM LN L FSGG SLERFSI FA I GI M PYI S ASIIIQL VAEVL PSL KA L K K 92
Cdd:CHL00161 19 G L L LLI R L G TF IPVPG IDHTQ L YP S LS -- N NPL L NL LN T FSGG GFFVIGL FA L GI L PYI N ASIIIQL LTSII PSL EK L Q K 96
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080581929 93 E - GEAGRR TLTK YTR WG TL LV A VV Q AFAAAA vv YQR P D L VVIGRTEFYISAIT c L VT G T M FLM WL G E QM TE R G I GNG V SL 171
Cdd:CHL00161 97 E e GEAGRR KINQ YTR YL TL GW A II Q SIGISF -- WLK P Y L FNWNLLLALEIVLA - L TS G S M IVL WL S E LI TE K G L GNG S SL 173
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080581929 172 LI TAG IV AA LP SAVSN LL ----- N LA I TGASGYGTIL F VL fgglcl IYIVVYIESGQ RKIP IHY A R r Q I G NRIVQGQKTH 246
Cdd:CHL00161 174 LI FFN IV SN LP KLLQS LL fslsa N IT I LSILLLLFLF F IT ------ LIGIIFLQEAI RKIP LIS A K - Q L G KSSRLASNSY 246
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080581929 247 LP FKI N M AGV I P P IFAS SVILF P SQIIGW L DKRVDGNAFVD F IS an L SPG K S LYLV VFTAA I I FF C YFY TAL V FS P REMA 326
Cdd:CHL00161 247 LP LRL N Q AGV M P I IFAS ALLVL P GYLTNI L LNQFLLPLLSL F LQ -- L ASF K I LYLV LYFVL I L FF S YFY STI V LN P KDIS 324
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080581929 327 ENL K K SGAFV PGIRPG EQ T SN YL E K VVM RLT FF GAL YITI I C L I P EFVTG VL GIPF -- H LG G TSLLILV V V TM D FGT Q VA 404
Cdd:CHL00161 325 ENL Q K MAVSI PGIRPG KA T TK YL K K TLN RLT LL GAL FLAF I A L L P NLIES VL NLSV fk G LG T TSLLILV G V AI D TSR Q IQ 404
410
....*....|...
gi 1080581929 405 S Y RMNQQ YE HLMR 417
Cdd:CHL00161 405 T Y LISNN YE NMYD 417
Name
Accession
Description
Interval
E-value
SecY
COG0201 Preprotein translocase subunit SecY [Intracellular trafficking, secretion, and vesicular ...
13-417
0e+00
Preprotein translocase subunit SecY [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 439971
Cd Length: 427
Bit Score: 565.48
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080581929 13 G A LIV F R V G A HIPVPG VNA AALA NS F KEGNA G I LG M LN L FSGG S L E RFSIFA I GIMPYI S ASII I QL VAE V L P S L KA L K K 92
Cdd:COG0201 23 G I LIV Y R L G S HIPVPG IDP AALA QL F AQQSG G L LG L LN M FSGG A L S RFSIFA L GIMPYI T ASII M QL LTV V I P K L EE L Q K 102
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080581929 93 EGE A GR RTL T K YTR WG T LLV A V --- VQAFAAAAVVYQRPD LV VIGRTE FY ISAITC L VT GTMFLMWLGEQ M TERGIGNG V 169
Cdd:COG0201 103 EGE E GR KKI T Q YTR YL T VVL A L lqa FGIALGLRSGPPGGG LV IDPGIL FY LLTVIT L TA GTMFLMWLGEQ I TERGIGNG I 182
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080581929 170 SL L I T AGIVA A LPSA VSNLLN L AI TG ASGYGTI L FV L FGG L CL I YI VV YI E SG QR K IP IH YA R R QI G N R IVQ GQ K T H LP F 249
Cdd:COG0201 183 SL I I F AGIVA R LPSA LAQIFE L VR TG ELSILLL L LL L VLA L AV I AF VV FV E QA QR R IP VQ YA K R VV G R R MYG GQ S T Y LP L 262
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080581929 250 K I NMAGVIP P IFASS VI LFP SQ I IGWLD krv DGNAFVDF I SAN LSPG KS LY L V VFTAA IIFF C YFYTA LV F S P R E M A E NL 329
Cdd:COG0201 263 K V NMAGVIP I IFASS LL LFP AT I AQFFG --- GSSGWLQW I ANY LSPG SP LY I V LYALL IIFF T YFYTA IT F N P E E I A D NL 339
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080581929 330 KKSG A F V PGIRPG EQ T SN YL E KV VM RLT FF GA LYITI I CLI PE FVTGVL G I PF HL GGTSLLI L V V V TM D FGT Q VA S YRMN 409
Cdd:COG0201 340 KKSG G F I PGIRPG KP T AE YL D KV LT RLT LV GA IFLAL I AIL PE ILGAIT G V PF YF GGTSLLI V V G V AL D TMK Q IE S QLLM 419
....*...
gi 1080581929 410 QQ YE HLMR 417
Cdd:COG0201 420 RH YE GFLK 427
SecY
pfam00344 SecY;
61-399
3.19e-129
SecY;
Pssm-ID: 459771
Cd Length: 322
Bit Score: 375.24
E-value: 3.19e-129
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080581929 61 S I FA I GIMPYI S ASII I QL VA e V LP SL KA LKKEGE A GR RTLTK YTR WG T LLV A VV QA FAAAAVV yqrpd L V VI G RTE FY I 140
Cdd:pfam00344 1 S L FA L GIMPYI T ASII M QL LG - V VI SL EE LKKEGE E GR KKINQ YTR YL T VVL A LI QA IGIVLSL ----- G V YG G GGG FY L 74
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080581929 141 SAITC L VT GTMFLMWLGEQ M T ER GIGNG V SL L I T AGIVA A LPSA V S NL L - N L AIT GA SGYGTI L FV L FGG L CL I YI VVY I 219
Cdd:pfam00344 75 LIVLQ L TA GTMFLMWLGEQ I T KY GIGNG I SL I I F AGIVA R LPSA F S GA L i A L FRL GA RSILPN L LL L IIT L AV I AL VVY L 154
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080581929 220 ESGQ R K IP IH YA R R QI G nrivq GQ KTH LP F K I N M AGVIP P IFASS VIL FP SQ I IGWLD krvdgnaf VD FI S A N L S PG KS L 299
Cdd:pfam00344 155 QQAE R R IP VQ YA K R VV G ----- GQ SSY LP L K L N Y AGVIP I IFASS LLS FP AT I AQFFG -------- LQ FI A A A L D PG SP L 221
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080581929 300 Y L V VFTAA IIFF C YFYTA LV F S P REM AENLKK S G A F V PGIRPG EQ T SN YL EK V VM R L T FF GAL YIT II CLI P EFVTGVL G 379
Cdd:pfam00344 222 Y T V LYALL IIFF A YFYTA IT F N P KDI AENLKK Q G G F I PGIRPG KP T AK YL DR V IP R I T LL GAL FLG II AVL P DLLGALT G 301
330 340
....*....|....*....|
gi 1080581929 380 I PF HL GGTSLLI L V V V TM D F 399
Cdd:pfam00344 302 V PF GF GGTSLLI V V G V AL D T 321
3a0501s007
TIGR00967 preprotein translocase, SecY subunit; Members of this protein family are the SecY component of ...
13-412
3.66e-116
preprotein translocase, SecY subunit; Members of this protein family are the SecY component of the SecYEG translocon, or protein translocation pore, which is driven by the ATPase SecA. This model does not discriminate bacterial from archaeal forms. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273369
Cd Length: 410
Bit Score: 345.43
E-value: 3.66e-116
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080581929 13 G A L IV FR V G AH IP V PG VN A A A LA N SF ke GNAG I L G M LN L FSGG S L ERF SIFA I GI M PYI S ASIIIQ - L VAE V L P S L KAL K 91
Cdd:TIGR00967 9 G L L VL FR I G TF IP I PG ID A S A FQ N LI -- QQNP I F G L LN T FSGG A L GQI SIFA L GI S PYI T ASIIIQ l L TGD V P P L L QLQ K 86
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080581929 92 KEGE A GRR TLTKY TR WG TL LV A VV Q AFAAAAVVYQR pd L V VIGRTE FY ISAITC L V TG T M FL MWLGEQ M T ER GIGNG V SL 171
Cdd:TIGR00967 87 KEGE I GRR KINQL TR YL TL IL A FI Q SLGIVMTGMYG -- Y V GDPGAF FY LLIVIQ L T TG S M IV MWLGEQ I T KY GIGNG I SL 164
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080581929 172 LI T AGI V A AL PS AVSNLLNLAITGASGYGTI ------ L FV L FGGLCLIYI VV YIESGQ RKIPI HY A R RQ I G N R iv QG Q K T 245
Cdd:TIGR00967 165 LI F AGI A A TI PS GLLQPTEVRQSKVRDLISF lqnlpf L LY L IATIIVFAV VV FVQQAR RKIPI QS A K RQ G G R R -- GS Q S T 242
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080581929 246 H LP F K I N M AGVIP P IFAS SVILF P SQ I IGW L DKRVD G NA F VDF I SA n LS PGKSLYLVVFTAA IIFF CY FY TA L VFS P RE M 325
Cdd:TIGR00967 243 Y LP L K L N Y AGVIP V IFAS ALLSN P AT I SQF L NSNQG G AW F LNP I LS - LS LSDPIGAILYLIL IIFF SF FY VE L QLN P ED M 321
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080581929 326 A E NLKK S G A F V PGIRPG EQ T SN YL EK V VM RLTF F G A L YITI I C L I P E F VTGVL G I P -- FH LGGTSLLI L V V V TM D FGT Q V 403
Cdd:TIGR00967 322 A K NLKK Q G M F I PGIRPG KM T EK YL KR V IP RLTF V G S L FLGL I A L L P N F LGAIG G L P ts KG LGGTSLLI V V G V AI D TYK Q L 401
....*....
gi 1080581929 404 A S YRMNQQ Y 412
Cdd:TIGR00967 402 E S ELISRN Y 410
secY
CHL00161 preprotein translocase subunit SecY; Validated
13-417
8.92e-91
preprotein translocase subunit SecY; Validated
Pssm-ID: 214379
Cd Length: 417
Bit Score: 280.73
E-value: 8.92e-91
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080581929 13 G A L IVF R V G AH IPVPG VNAAA L AN S FK eg N AGI L GM LN L FSGG SLERFSI FA I GI M PYI S ASIIIQL VAEVL PSL KA L K K 92
Cdd:CHL00161 19 G L L LLI R L G TF IPVPG IDHTQ L YP S LS -- N NPL L NL LN T FSGG GFFVIGL FA L GI L PYI N ASIIIQL LTSII PSL EK L Q K 96
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080581929 93 E - GEAGRR TLTK YTR WG TL LV A VV Q AFAAAA vv YQR P D L VVIGRTEFYISAIT c L VT G T M FLM WL G E QM TE R G I GNG V SL 171
Cdd:CHL00161 97 E e GEAGRR KINQ YTR YL TL GW A II Q SIGISF -- WLK P Y L FNWNLLLALEIVLA - L TS G S M IVL WL S E LI TE K G L GNG S SL 173
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080581929 172 LI TAG IV AA LP SAVSN LL ----- N LA I TGASGYGTIL F VL fgglcl IYIVVYIESGQ RKIP IHY A R r Q I G NRIVQGQKTH 246
Cdd:CHL00161 174 LI FFN IV SN LP KLLQS LL fslsa N IT I LSILLLLFLF F IT ------ LIGIIFLQEAI RKIP LIS A K - Q L G KSSRLASNSY 246
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080581929 247 LP FKI N M AGV I P P IFAS SVILF P SQIIGW L DKRVDGNAFVD F IS an L SPG K S LYLV VFTAA I I FF C YFY TAL V FS P REMA 326
Cdd:CHL00161 247 LP LRL N Q AGV M P I IFAS ALLVL P GYLTNI L LNQFLLPLLSL F LQ -- L ASF K I LYLV LYFVL I L FF S YFY STI V LN P KDIS 324
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080581929 327 ENL K K SGAFV PGIRPG EQ T SN YL E K VVM RLT FF GAL YITI I C L I P EFVTG VL GIPF -- H LG G TSLLILV V V TM D FGT Q VA 404
Cdd:CHL00161 325 ENL Q K MAVSI PGIRPG KA T TK YL K K TLN RLT LL GAL FLAF I A L L P NLIES VL NLSV fk G LG T TSLLILV G V AI D TSR Q IQ 404
410
....*....|...
gi 1080581929 405 S Y RMNQQ YE HLMR 417
Cdd:CHL00161 405 T Y LISNN YE NMYD 417
secY
PRK12417 preprotein translocase subunit SecY; Reviewed
15-418
7.79e-35
preprotein translocase subunit SecY; Reviewed
Pssm-ID: 237095
Cd Length: 404
Bit Score: 133.20
E-value: 7.79e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080581929 15 L IVFRV G AH I PV P G V NAAA lans FKE G NAGI L GMLNLFS GG S L ERFS IF AI G IM P YISAS II I QL VA evlpslka LK K EG 94
Cdd:PRK12417 23 L FIYIL G SN I SI P F V SYND ---- MLG G HESF L KIAAANT GG D L RTLN IF SL G LG P WMTSM II L QL FS -------- YR K RD 90
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080581929 95 EAGRR T LTKYTRWGTL L VAVVQAFAAA AV VYQR P DLVV I GR T EFYI s AITC LVTGTMFL M WL GEQMTER GIG n G VSLLIT 174
Cdd:PRK12417 91 GLMKQ T IEEQHYRERI L TLIIAVIQSL AV ILSL P SKER I SQ T NILL - NTLI LVTGTMFL V WL SDLNARY GIG - G PMPIVL 168
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080581929 175 AGIVAAL P SA V SNLLN laitg AS GYGT IL FV L FGGLC L i YIVVY IE SGQRK IP I hyar RQ I G N RIVQGQKTH L PF K I N M A 254
Cdd:PRK12417 169 VSMIKSI P QD V IEYID ----- AS HIVI IL LI L LVIIT L - FFLYF IE LVEYR IP Y ---- ND I M N HNRFKMYSY L SI K L N P A 238
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080581929 255 G VI P PIFAS S VIL FP SQ II ---- GWLDKRVDGN A FV D FI S ANLSP G KSL YL VV ftaa IIFFC YF YTALVFSPREM A ENLK 330
Cdd:PRK12417 239 G GM P IMYSM S LLV FP QY II ilil SIFPNNSGIS A DM D ML S FGSPL G VTV YL IL ---- QFLLS YF FSFVNINTKQI A KDML 314
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080581929 331 KSG AFV PG IR PG EQ T SN YL EKVVM R LTF FGAL YI T I I CL IP EFV T gv L GI P -- FHLGGT S LLILVV V T M D F -- GTQVASY 406
Cdd:PRK12417 315 KSG NYI PG VY PG KD T ER YL NYIAR R FSW FGAL FV T V I AG IP LYF T -- L FD P hl STEIYF S GQFMMF V G M S F ni ADEIRAL 392
410
....*....|..
gi 1080581929 407 RMNQQ Y EH L MRK 418
Cdd:PRK12417 393 LYFDK Y KP L LNQ 404
acc_sec_Y2
TIGR02920 accessory Sec system translocase SecY2; Members of this family are restricted to the ...
15-416
4.33e-31
accessory Sec system translocase SecY2; Members of this family are restricted to the Firmicutes lineage (low-GC Gram-positive bacteria) and appear to be paralogous to, and much more divergent than, the preprotein translocase SecY. Members include the SecY2 protein of the accessory Sec system in Streptococcus gordonii, involved in export of the highly glycosylated platelet-binding protein GspB. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 131966
Cd Length: 395
Bit Score: 122.92
E-value: 4.33e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080581929 15 LI VFRV G AH IP V P G V NAAA la NSFKEGNAGILGMLNLFS GG S L ERF SIF AI G IM P YISAS II I QL V aevlp S LKALKKEG 94
Cdd:TIGR02920 13 LI IYVL G SY IP I P F V EVSK -- QDMEGVKNSFFKIAIANT GG N L TTL SIF SL G LG P WMTSM II L QL F ----- S FTKSDGFD 85
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080581929 95 EAGRRTLTKYT R WG TL LV A VV Q AF A AAAVVYQRPD lvv IGRTEFYI s A ITC LVTGT MF L M WL GEQMTER GIG n G VSLLIT 174
Cdd:TIGR02920 86 AQSPKEQQYRE R FL TL II A II Q GL A IIHSFTNKNG --- LSDFNMLL - A TLI LVTGT CL L V WL ADLNAKY GIG - G SMPIVL 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080581929 175 AGIVAAL PS A V SN L LNLAITGA sgygt I LFVLFGG L CLIYIVVY IE SGQRK IP ih YARRQIG NR IV qg QKTH LP F K I N M A 254
Cdd:TIGR02920 161 VSMLKNI PS N V FE L FQMSYIWL ----- I ALLILLT L VALFLLAF IE RAEYR IP -- VNDISLH NR SN -- LMSY LP I K L N P A 231
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080581929 255 G VIPPIFAS S VILF P SQ II GW L DKRVDGNAFVDFISANL S PGKSLYLVVFTAAIIFFC YF Y T ALVFS P R E MAENLK KSG A 334
Cdd:TIGR02920 232 G GMMYMYVM S LLML P QY II IL L GRIFPNSSLINNWVFQF S FSSPVGILIYLILQMLLS YF F T FVNIN P K E ISKSFR KSG N 311
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080581929 335 FV PGI R PG EQ T SN YL EKVVM R LTF FG ALYITIICL IP EF vt GV L GI P FH L GGTSL -- LILVVVT M D F GT -- QVASYRMNQ 410
Cdd:TIGR02920 312 YI PGI A PG KD T QR YL NRLAR R FCW FG GVFNAFQLG IP LY -- FA L FV P HL L TEAYI pg QFMMITG M S F NI ad EIRTILYFD 389
....*.
gi 1080581929 411 Q Y EH L M 416
Cdd:TIGR02920 390 R Y KP L L 395
PRK08568
PRK08568 preprotein translocase subunit SecY; Reviewed
13-418
6.48e-17
preprotein translocase subunit SecY; Reviewed
Pssm-ID: 236293
Cd Length: 462
Bit Score: 82.19
E-value: 6.48e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080581929 13 GA LI VFRVGAH IP VP G VNAAALA nsfkegnag ILGM L NLFSG GS le RFSIFAI GI M P YIS A S II I QL V -- AEVLP slka L 90
Cdd:PRK08568 35 IV LI LYFILTN IP LY G ISQSSQD --------- LFEL L RIIFA GS -- FGTLLQL GI G P IVT A G II L QL L vg SKLIN ---- L 99
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080581929 91 KKEGEAG R RTLTKYTRWGTLLVAVVQ A FAAAAVVYQR P DLVVIGRTEFYISAITC L VT G TMFLMW L G E QMTER GIG N G V S 170
Cdd:PRK08568 100 DLSDPED R ALFQGLQKLLAIVMIALE A APFVLAGAFG P ATGLASTPLLALLIFLQ L FL G GILIIL L D E LVSKW GIG S G I S 179
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080581929 171 L L I T AG I ------------------- V AAL P ---- SAV S NL L N LA ITGASGYGTI L f V L FGGLCLIY IVVY I ES GQRK IP 227
Cdd:PRK08568 180 L F I L AG V sqtifvglfnwltggqglp V GFI P alfs AIT S GN L T LA LLLTTRGLLL L - G L ITTIVIFL IVVY L ES MRVE IP 258
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080581929 228 IHYA R rqignri V Q G QKTHL P F K INMAG V I P P I FAS sv I L FPS - Q II G W L DK R VDGNAFVDFI S AN ---------- LSP G 296
Cdd:PRK08568 259 LSHG R ------- V R G ARGRY P L K FIYVS V L P V I LVR -- A L QAN i Q LF G Q L LQ R LGIPILGTYD S SG aspisglayy LSP P 329
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080581929 297 K S L ------------ Y LVVFTAAI I F F CY F YTALV - FS P REM A EN L KK SG AFV PG I R PGEQT - SNY LE KVVMRL T FF G AL 362
Cdd:PRK08568 330 H S P ydwiqdplraii Y ALFMIVLS I L F AI F WVETT g LD P KTQ A RQ L QN SG MQI PG F R RNPKV i EKV LE RYIPPV T VI G GA 409
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*.
gi 1080581929 363 YITIICLIPEF v T G V LG ipfhl GGT S LL IL V VVTMDFGTQV A SYRMNQQ Y E h L M R K 418
Cdd:PRK08568 410 IVGLLAVLADL - L G A LG ----- GGT G LL LT V SIVYQLYEEI A REQLMEM Y P - L L R R 458
PTZ00219
PTZ00219 Sec61 alpha subunit; Provisional
206-397
2.88e-04
Sec61 alpha subunit; Provisional
Pssm-ID: 185519 [Multi-domain]
Cd Length: 474
Bit Score: 43.07
E-value: 2.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080581929 206 L FGGLCLIYI V V Y IESGQRKI P IHYAR rqignri V Q GQ KTHL P F K INMAGV IP P I FASSV --- IL F P SQI I --------- 273
Cdd:PTZ00219 248 L LATVLVFLV V I Y FQGFRVDL P LKSQK ------- V R GQ QQSY P I K LFYTSN IP I I LQTAL vsn LY F F SQI L yrrfknnfl 320
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080581929 274 ----- G W LDKRVD G NAF - V DFISAN LSP GK S LY -------- LVVFTAAII F F C YFYTALVF ----- S PREM A EN LK KS G A 334
Cdd:PTZ00219 321 inllg Q W QEVEYS G QSV p V GGLAYY LSP PN S FS diindpih TILYIVFVL F S C ALFSKTWI evsgs S AKDV A KQ LK DQ G M 400
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1080581929 335 FVP G I R PGEQTSNY L EKVVMRLTF FG ALY I TIICLIPE F V t G VL G ipfhl G GT S ll IL VV VT M 397
Cdd:PTZ00219 401 GMV G Y R DSSSMVRV L NRYIPTAAS FG GMC I GALTILAD F L - G AI G ----- S GT G -- IL LA VT I 455
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
