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Conserved domains on  [gi|1080801872|gb|OFP68412|]
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single-stranded DNA-binding protein [Staphylococcus sp. HMSC068G03]

Protein Classification

single-stranded DNA-binding protein( domain architecture ID 11427956)

single-stranded DNA (ssDNA)-binding protein plays a key role in DNA replication, recombination, and repair

CATH:  2.40.50.140
Gene Ontology:  GO:0003697|GO:0006260
PubMed:  12598368|8458342|27838363
SCOP:  4000346

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ssb COG0629
Single-stranded DNA-binding protein [Replication, recombination and repair];
2-113 9.07e-32

Single-stranded DNA-binding protein [Replication, recombination and repair];


:

Pssm-ID: 440394  Cd Length: 116  Bit Score: 108.77  E-value: 9.07e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080801872   2 LNKIVIVGRLTKDAQI-YEKEEVKIATFCVATERNYKDDNNEQI--VDYILCKAYGRTATNIEKYTSQGSLVGITGQMRS 78
Cdd:COG0629     1 MNKVTLVGRLGKDPELrYTPSGTAVANFRLAVNRRYKDQDGEWKdeTDWHRVVAWGKLAENAAEYLKKGDKVYVEGRLRT 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1080801872  79 RKYT-KDQQTHFVTELYVETIKFMSSKGKTHEILEE 113
Cdd:COG0629    81 RSWEdKDGQKRYTTEVVADEIQFLGSRPSGGGGGDD 116
 
Name Accession Description Interval E-value
Ssb COG0629
Single-stranded DNA-binding protein [Replication, recombination and repair];
2-113 9.07e-32

Single-stranded DNA-binding protein [Replication, recombination and repair];


Pssm-ID: 440394  Cd Length: 116  Bit Score: 108.77  E-value: 9.07e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080801872   2 LNKIVIVGRLTKDAQI-YEKEEVKIATFCVATERNYKDDNNEQI--VDYILCKAYGRTATNIEKYTSQGSLVGITGQMRS 78
Cdd:COG0629     1 MNKVTLVGRLGKDPELrYTPSGTAVANFRLAVNRRYKDQDGEWKdeTDWHRVVAWGKLAENAAEYLKKGDKVYVEGRLRT 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1080801872  79 RKYT-KDQQTHFVTELYVETIKFMSSKGKTHEILEE 113
Cdd:COG0629    81 RSWEdKDGQKRYTTEVVADEIQFLGSRPSGGGGGDD 116
SSB pfam00436
Single-strand binding protein family; This family includes single stranded binding proteins ...
 2-101 2.49e-27

Single-strand binding protein family; This family includes single stranded binding proteins and also the primosomal replication protein N (PriB). PriB forms a complex with PriA, PriC and ssDNA.


Pssm-ID: 425680  Cd Length: 103  Bit Score: 97.31  E-value: 2.49e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080801872   2 LNKIVIVGRLTKDAQI-YEKEEVKIATFCVATERNYKDD-NNEQIVDYILCKAYGRTATNIEKYTSQGSLVGITGQMRSR 79
Cdd:pfam00436   1 MNKVILVGRLTRDPELrYTPNGNAVANFTLATNRRFKDRgEGDEETDFHRVVVFGKLAEVAAQYLKKGSLVYVEGRLQTR 80

                          90       100
                  ....*....|....*....|...
gi 1080801872  80 KYTKDQ-QTHFVTELYVETIKFM 101
Cdd:pfam00436  81 KYEDQEgQKRYVTEIVADEVQFL 103
PRK06752 PRK06752
single-stranded DNA-binding protein; Validated
 1-104 1.59e-25

single-stranded DNA-binding protein; Validated


Pssm-ID: 168660  Cd Length: 112  Bit Score: 92.79  E-value: 1.59e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080801872   1 MLNKIVIVGRLTKDAQIY-EKEEVKIATFCVATERNYKDDNNEQIVDYILCKAYGRTATNIEKYTSQGSLVGITGQMRSR 79
Cdd:PRK06752    1 MMNRVVLIGRLTKEPELYyTKQGVAYARVCVAVNRGFRNSLGEQQVDFINCVVWRKSAENVTEYCTKGSLVGITGRIHTR 80

                          90       100
                  ....*....|....*....|....*.
gi 1080801872  80 KYTKDQQTH-FVTELYVETIKFMSSK 104
Cdd:PRK06752   81 NYEDDQGKRiYITEVVIESITFLERR 106
ssb TIGR00621
single stranded DNA-binding protein (ssb); All proteins in this family for which functions are ...
 1-105 8.51e-23

single stranded DNA-binding protein (ssb); All proteins in this family for which functions are known are single-stranded DNA binding proteins that function in many processes including transcription, repair, replication and recombination. Members encoded between genes for ribosomal proteins S6 and S18 should be annotated as primosomal protein N (PriB). Forms in gamma-protoeobacteria are much shorter and poorly recognized by this model. Additional members of this family include phage proteins. Eukaryotic members are organellar proteins. [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273179 [Multi-domain]  Cd Length: 164  Bit Score: 87.47  E-value: 8.51e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080801872   1 MLNKIVIVGRLTKDAQI-YEKEEVKIATFCVATERNYKDDNNE--QIVDYILCKAYGRTATNIEKYTSQGSLVGITGQMR 77
Cdd:TIGR00621   3 MVNKVILVGRLTRDPELrYTPSGNAVANFTLATNRRWKDQDGEwkEETEWHDIVIFGRLAEVAAQYLKKGSLVYVEGRLR 82

                          90       100
                  ....*....|....*....|....*....
gi 1080801872  78 SRKYTKDQ-QTHFVTELYVETIKFMSSKG 105
Cdd:TIGR00621  83 TRKWEDQNgQKRSKTEIIADNVQLLDLLG 111
SSB_OBF cd04496
SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs ...
 5-100 3.50e-21

SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart at forks that have stalled at sites of DNA damage. It also plays a role in the assembly of primosome during replication initiation at the bacteriophage phiX174 origin. PriB physically interacts with SSB and binds ssDNA with high affinity.


Pssm-ID: 239942  Cd Length: 100  Bit Score: 81.50  E-value: 3.50e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080801872   5 IVIVGRLTKDAQI-YEKEEVKIATFCVATERNYKDDNN-EQIVDYILCKAYGRTATNIEKYTSQGSLVGITGQMRSRKYT 82
Cdd:cd04496     1 VILIGRLGKDPELrYTPSGTPVARFSLAVNRRRKDRDEeEEETDWIRVVAFGKLAENAAKYLKKGDLVYVEGRLRTRSWE 80

                          90
                  ....*....|....*....
gi 1080801872  83 -KDQQTHFVTELYVETIKF 100
Cdd:cd04496    81 dKDGQKRYGTEVVADRIEF 99
 
Name Accession Description Interval E-value
Ssb COG0629
Single-stranded DNA-binding protein [Replication, recombination and repair];
2-113 9.07e-32

Single-stranded DNA-binding protein [Replication, recombination and repair];


Pssm-ID: 440394  Cd Length: 116  Bit Score: 108.77  E-value: 9.07e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080801872   2 LNKIVIVGRLTKDAQI-YEKEEVKIATFCVATERNYKDDNNEQI--VDYILCKAYGRTATNIEKYTSQGSLVGITGQMRS 78
Cdd:COG0629     1 MNKVTLVGRLGKDPELrYTPSGTAVANFRLAVNRRYKDQDGEWKdeTDWHRVVAWGKLAENAAEYLKKGDKVYVEGRLRT 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1080801872  79 RKYT-KDQQTHFVTELYVETIKFMSSKGKTHEILEE 113
Cdd:COG0629    81 RSWEdKDGQKRYTTEVVADEIQFLGSRPSGGGGGDD 116
SSB pfam00436
Single-strand binding protein family; This family includes single stranded binding proteins ...
 2-101 2.49e-27

Single-strand binding protein family; This family includes single stranded binding proteins and also the primosomal replication protein N (PriB). PriB forms a complex with PriA, PriC and ssDNA.


Pssm-ID: 425680  Cd Length: 103  Bit Score: 97.31  E-value: 2.49e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080801872   2 LNKIVIVGRLTKDAQI-YEKEEVKIATFCVATERNYKDD-NNEQIVDYILCKAYGRTATNIEKYTSQGSLVGITGQMRSR 79
Cdd:pfam00436   1 MNKVILVGRLTRDPELrYTPNGNAVANFTLATNRRFKDRgEGDEETDFHRVVVFGKLAEVAAQYLKKGSLVYVEGRLQTR 80

                          90       100
                  ....*....|....*....|...
gi 1080801872  80 KYTKDQ-QTHFVTELYVETIKFM 101
Cdd:pfam00436  81 KYEDQEgQKRYVTEIVADEVQFL 103
PRK06752 PRK06752
single-stranded DNA-binding protein; Validated
 1-104 1.59e-25

single-stranded DNA-binding protein; Validated


Pssm-ID: 168660  Cd Length: 112  Bit Score: 92.79  E-value: 1.59e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080801872   1 MLNKIVIVGRLTKDAQIY-EKEEVKIATFCVATERNYKDDNNEQIVDYILCKAYGRTATNIEKYTSQGSLVGITGQMRSR 79
Cdd:PRK06752    1 MMNRVVLIGRLTKEPELYyTKQGVAYARVCVAVNRGFRNSLGEQQVDFINCVVWRKSAENVTEYCTKGSLVGITGRIHTR 80

                          90       100
                  ....*....|....*....|....*.
gi 1080801872  80 KYTKDQQTH-FVTELYVETIKFMSSK 104
Cdd:PRK06752   81 NYEDDQGKRiYITEVVIESITFLERR 106
PRK07275 PRK07275
single-stranded DNA-binding protein; Provisional
 1-104 7.76e-24

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180915 [Multi-domain]  Cd Length: 162  Bit Score: 89.95  E-value: 7.76e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080801872   1 MLNKIVIVGRLTKDAQI-YEKEEVKIATFCVATERNYKDDNNEQIVDYILCKAYGRTATNIEKYTSQGSLVGITGQMRSR 79
Cdd:PRK07275    1 MINNVVLVGRMTRDAELrYTPSNVAVATFTLAVNRTFKSQNGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR 80

                          90       100
                  ....*....|....*....|....*.
gi 1080801872  80 KYTKDQ-QTHFVTELYVETIKFMSSK 104
Cdd:PRK07275   81 NYENQQgQRVYVTEVVADNFQMLESR 106
ssb TIGR00621
single stranded DNA-binding protein (ssb); All proteins in this family for which functions are ...
 1-105 8.51e-23

single stranded DNA-binding protein (ssb); All proteins in this family for which functions are known are single-stranded DNA binding proteins that function in many processes including transcription, repair, replication and recombination. Members encoded between genes for ribosomal proteins S6 and S18 should be annotated as primosomal protein N (PriB). Forms in gamma-protoeobacteria are much shorter and poorly recognized by this model. Additional members of this family include phage proteins. Eukaryotic members are organellar proteins. [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273179 [Multi-domain]  Cd Length: 164  Bit Score: 87.47  E-value: 8.51e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080801872   1 MLNKIVIVGRLTKDAQI-YEKEEVKIATFCVATERNYKDDNNE--QIVDYILCKAYGRTATNIEKYTSQGSLVGITGQMR 77
Cdd:TIGR00621   3 MVNKVILVGRLTRDPELrYTPSGNAVANFTLATNRRWKDQDGEwkEETEWHDIVIFGRLAEVAAQYLKKGSLVYVEGRLR 82

                          90       100
                  ....*....|....*....|....*....
gi 1080801872  78 SRKYTKDQ-QTHFVTELYVETIKFMSSKG 105
Cdd:TIGR00621  83 TRKWEDQNgQKRSKTEIIADNVQLLDLLG 111
PRK07274 PRK07274
single-stranded DNA-binding protein; Provisional
 1-129 2.54e-21

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180914  Cd Length: 131  Bit Score: 82.88  E-value: 2.54e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080801872   1 MLNKIVIVGRLTKDAQIYEKEEVK-IATFCVATERNYKDDNNEQIVDYILCKAYGRTATNIEKYTSQGSLVGITGQMRSR 79
Cdd:PRK07274    1 MYNKVILIGRLTATPELVKTANDKsVARVTLAVNRRFKNQNGEREADFINVVLWGKLAETLASYASKGSLISIDGELRTR 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1080801872  80 KYTKDQQTHFVTELYVETIKFMSSKGkTHEILEEHPTTNIQPFSVDEMKL 129
Cdd:PRK07274   81 KYEKDGQTHYVTEVLCQSFQLLESRA-QRAMRENNVGNDLADLVLEEEEL 129
SSB_OBF cd04496
SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs ...
 5-100 3.50e-21

SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart at forks that have stalled at sites of DNA damage. It also plays a role in the assembly of primosome during replication initiation at the bacteriophage phiX174 origin. PriB physically interacts with SSB and binds ssDNA with high affinity.


Pssm-ID: 239942  Cd Length: 100  Bit Score: 81.50  E-value: 3.50e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080801872   5 IVIVGRLTKDAQI-YEKEEVKIATFCVATERNYKDDNN-EQIVDYILCKAYGRTATNIEKYTSQGSLVGITGQMRSRKYT 82
Cdd:cd04496     1 VILIGRLGKDPELrYTPSGTPVARFSLAVNRRRKDRDEeEEETDWIRVVAFGKLAENAAKYLKKGDLVYVEGRLRTRSWE 80

                          90
                  ....*....|....*....
gi 1080801872  83 -KDQQTHFVTELYVETIKF 100
Cdd:cd04496    81 dKDGQKRYGTEVVADRIEF 99
PRK06751 PRK06751
single-stranded DNA-binding protein; Provisional
 1-121 1.24e-20

single-stranded DNA-binding protein; Provisional


Pssm-ID: 168659 [Multi-domain]  Cd Length: 173  Bit Score: 82.15  E-value: 1.24e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080801872   1 MLNKIVIVGRLTKDAQI-YEKEEVKIATFCVATERNYKDDNNEQIVDYILCKAYGRTATNIEKYTSQGSLVGITGQMRSR 79
Cdd:PRK06751    1 MMNRVILVGRLTKDPDLrYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1080801872  80 KYT-KDQQTHFVTELYVETIKFMSSKGKTHeilEEHPTTNIQP 121
Cdd:PRK06751   81 NYEgQDGKRVYVTEVLAESVQFLEPRNGGG---EQRGSFNQQP 120
PRK13732 PRK13732
single-stranded DNA-binding protein; Provisional
 2-128 7.71e-14

single-stranded DNA-binding protein; Provisional


Pssm-ID: 184284 [Multi-domain]  Cd Length: 175  Bit Score: 64.37  E-value: 7.71e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080801872   2 LNKIVIVGRLTKDAQI-YEKEEVKIATFCVATERNYKDDNNEQI---VDYILCKAYGRTATNIEKYTSQGSLVGITGQMR 77
Cdd:PRK13732    6 INKVILVGRLGKDPEVrYIPNGGAVANLQVATSESWRDKQTGEMreqTEWHRVVLFGKLAEVAGEYLRKGAQVYIEGQLR 85

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1080801872  78 SRKYTKDQQTHFVTELYVE---TIKFMSSKGKTHEILEEHPTTNIQPFSVDEMK 128
Cdd:PRK13732   86 TRSWEDNGITRYVTEILVKttgTMQMLGRAPQQNAQPQPGPQQNGQPQSADATK 139
PRK08486 PRK08486
single-stranded DNA-binding protein; Provisional
 1-105 8.06e-12

single-stranded DNA-binding protein; Provisional


Pssm-ID: 236275 [Multi-domain]  Cd Length: 182  Bit Score: 59.09  E-value: 8.06e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080801872   1 MLNKIVIVGRLTKDAQI-YEKEEVKIATFCVATERNYKDDNNEQI--VDYILCKAYGRTATNIEKYTSQGSLVGITGQMR 77
Cdd:PRK08486    1 MFNKVILVGNLTRDVELrYLPSGSAIATIGLATSRRFKKQDGEKGeeVCFIDIRLFGRTAEIANQYLSKGSKVLIEGRLT 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1080801872  78 SRKYTkDQ-----QTHFVTelyVETIKFMSSKG 105
Cdd:PRK08486   81 FESWM-DQngqkrSKHTIT---AESMQMLDSKS 109
PRK08763 PRK08763
single-stranded DNA-binding protein; Provisional
 2-106 5.90e-08

single-stranded DNA-binding protein; Provisional


Pssm-ID: 181549 [Multi-domain]  Cd Length: 164  Bit Score: 48.78  E-value: 5.90e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080801872   2 LNKIVIVGRLTKDAQI-YEKEEVKIATFCVATE--RNYKDDNNEQIVDYILCKAYGRTATNIEKYTSQGSLVGITGQMRS 78
Cdd:PRK08763    5 INKVILVGNLGNDPDIkYTQSGMTITRISLATTsvRKDREGNTQERTEWHRVKFFGKLGEIAGEYLRKGSQCYIEGSIRY 84

                          90       100
                  ....*....|....*....|....*....
gi 1080801872  79 RKYT-KDQQTHFVTELYVETIKFMSSKGK 106
Cdd:PRK08763   85 DKFTgQDGQERYVTEIVADEMQMLGGRGE 113
PRK06863 PRK06863
single-stranded DNA-binding protein; Provisional
 2-107 1.54e-06

single-stranded DNA-binding protein; Provisional


Pssm-ID: 136097 [Multi-domain]  Cd Length: 168  Bit Score: 44.96  E-value: 1.54e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080801872   2 LNKIVIVGRLTKDAQIYEKEEVK-IATFCVATERNYKDDN-NE--QIVDYILCKAYGRTATNIEKYTSQGSLVGITGQMR 77
Cdd:PRK06863    4 INKVIIVGHLGNDPEIRTMPNGEaVANISVATSESWTDKNtGErrEVTEWHRIVFYRRQAEVAGEYLRKGSQVYVEGRLK 83

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1080801872  78 SRKYtKDQ--QTHFVTELYVETIKFMSSKGKT 107
Cdd:PRK06863   84 TRKW-QDQngQDRYTTEIQGDVLQMLGGRNQR 114
PRK06341 PRK06341
single-stranded DNA-binding protein; Provisional
 2-86 2.75e-06

single-stranded DNA-binding protein; Provisional


Pssm-ID: 235782 [Multi-domain]  Cd Length: 166  Bit Score: 44.02  E-value: 2.75e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080801872   2 LNKIVIVGRLTKDAQIYEKEEVK-IATFCVATERNYKDDNNEQ-----------IVDYILCKAygrtatnIEKYTSQGSL 69
Cdd:PRK06341    5 VNKVILIGNLGADPEIRRTQDGRpIANLRIATSETWRDRNSGErkektewhrvvIFNEGLCKV-------AEQYLKKGAK 77

                          90
                  ....*....|....*..
gi 1080801872  70 VGITGQMRSRKYTkDQQ 86
Cdd:PRK06341   78 VYIEGQLQTRKWT-DQS 93
PRK05733 PRK05733
single-stranded DNA-binding protein; Provisional
 2-96 1.34e-05

single-stranded DNA-binding protein; Provisional


Pssm-ID: 235585 [Multi-domain]  Cd Length: 172  Bit Score: 42.22  E-value: 1.34e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080801872   2 LNKIVIVGRLTKDAQI-YEKEEVKIATFCVATERNYKDDNNEQIVD---YILCKAYGRTATNIEKYTSQGSLVGITGQMR 77
Cdd:PRK05733    5 VNKVILVGTCGQDPEVrYLPNGNAVTNLSLATSEQWTDKQSGQKVErteWHRVSLFGKVAEIAGEYLRKGSQVYIEGKLQ 84

                          90
                  ....*....|....*....
gi 1080801872  78 SRKYTKDQQTHFVTELYVE 96
Cdd:PRK05733   85 TREWEKDGIKRYTTEIVVD 103
PRK07459 PRK07459
single-stranded DNA-binding protein; Provisional
 2-87 7.27e-05

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180986  Cd Length: 121  Bit Score: 39.67  E-value: 7.27e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080801872   2 LNKIVIVGRLTKDAQI--YEKEEVKiATFCVATERNYKDDNNeqivDYILCKAYGRTATNIEKYTSQGSLVGITGQMRSR 79
Cdd:PRK07459    3 LNSVTLVGRAGRDPEVryFESGSVV-CNLTLAVNRRSRDDEP----DWFNLEIWGKTAQVAADYVKKGSLIGITGSLKFD 77


                  ....*...
gi 1080801872  80 KYTkDQQT 87
Cdd:PRK07459   78 RWT-DRNT 84
PRK06293 PRK06293
single-stranded DNA-binding protein; Provisional
 7-100 3.29e-04

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180517 [Multi-domain]  Cd Length: 161  Bit Score: 38.34  E-value: 3.29e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080801872   7 IVGRLTKDAQI-YEKEEVKIATFCVATerNYKDDNNEQIVdYILCKAYGRTATNIEKYTSQGSLVGITGQMRSRKYT-KD 84
Cdd:PRK06293    6 IVGRLGADPEErMTSKGKRVVVLRLGV--KSRVGSKDETV-WCRCNIWGNRYDKMLPYLKKGSGVIVAGEMSPESYVdKD 82

                          90
                  ....*....|....*.
gi 1080801872  85 QQTHFVTELYVETIKF 100
Cdd:PRK06293   83 GSPQSSLVVSVDTIKF 98
PRK07772 PRK07772
single-stranded DNA-binding protein; Provisional
 5-98 1.29e-03

single-stranded DNA-binding protein; Provisional


Pssm-ID: 236092 [Multi-domain]  Cd Length: 186  Bit Score: 36.94  E-value: 1.29e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080801872   5 IVIVGRLTKDAQI-YEKEEVKIATFCVA-TERNYkDDNNEQIVD----YILCKAYGRTATNIEKYTSQGSLVGITGQMRS 78
Cdd:PRK07772    7 ITVVGNLTADPELrFTPSGAAVANFTVAsTPRTF-DRQTNEWKDgealFLRCSIWRQAAENVAESLTKGMRVIVTGRLKQ 85

                          90       100
                  ....*....|....*....|.
gi 1080801872  79 RKY-TKDQQTHFVTELYVETI 98
Cdd:PRK07772   86 RSYeTREGEKRTVVELEVDEI 106
PRK06642 PRK06642
single-stranded DNA-binding protein; Provisional
 2-96 5.49e-03

single-stranded DNA-binding protein; Provisional


Pssm-ID: 135984  Cd Length: 152  Bit Score: 35.08  E-value: 5.49e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080801872   2 LNKIVIVGRLTKDAQIYEKEEVK-IATFCVATERNYKD----DNNEQIVDYILCKAYGRTATNIEKYTSQGSLVGITGQM 76
Cdd:PRK06642    5 LNKVILIGNVGRDPEIRTTGEGKkIINLSLATTETWKDritsERKERTEWHRVVIFSEGLVSVVERYVTKGSKLYIEGSL 84

                          90       100
                  ....*....|....*....|.
gi 1080801872  77 RSRKYTKDQ-QTHFVTELYVE 96
Cdd:PRK06642   85 QTRKWNDNSgQEKYTTEVVLQ 105
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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