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Conserved domains on  [gi|1080839401|gb|OFQ03779|]
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hypothetical protein HMPREF2960_00395 [Corynebacterium sp. HMSC070B05]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF5997 pfam19460
Family of unknown function (DUF5997); This entry represents a member of a biosynthetic gene ...
 1-107 8.60e-68

Family of unknown function (DUF5997); This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0001814) is described by MIBiG as an example of the following biosynthetic class, NRP (non-ribosomal peptide). This family includes a protein from the ulleungmycin biosynthetic gene cluster from Streptomyces sp. KCB13F003.


:

Pssm-ID: 466097  Cd Length: 108  Bit Score: 199.60  E-value: 8.60e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080839401   1 MKPLTAAKKLGIFLPATPEEFRTGEISHAQFAELQSNPPEWLAELRRNGPHPRPEVARKLGITITALKKNDMDKPLTTAE 80
Cdd:pfam19460   1 MKPATAAKKLGIYLPATPEEFQEGPVTRAELNELQANPPEWLAELRRNGPHPRPVVARKLGVSISGLARGGVTEALTTAE 80

                          90       100
                  ....*....|....*....|....*..
gi 1080839401  81 IKDLLEQMPEWLEAARESMAKQRVEAA 107
Cdd:pfam19460  81 IKALLAEPPEWLVRERATQAEVRAEEA 107
 
Name Accession Description Interval E-value
DUF5997 pfam19460
Family of unknown function (DUF5997); This entry represents a member of a biosynthetic gene ...
 1-107 8.60e-68

Family of unknown function (DUF5997); This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0001814) is described by MIBiG as an example of the following biosynthetic class, NRP (non-ribosomal peptide). This family includes a protein from the ulleungmycin biosynthetic gene cluster from Streptomyces sp. KCB13F003.


Pssm-ID: 466097  Cd Length: 108  Bit Score: 199.60  E-value: 8.60e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080839401   1 MKPLTAAKKLGIFLPATPEEFRTGEISHAQFAELQSNPPEWLAELRRNGPHPRPEVARKLGITITALKKNDMDKPLTTAE 80
Cdd:pfam19460   1 MKPATAAKKLGIYLPATPEEFQEGPVTRAELNELQANPPEWLAELRRNGPHPRPVVARKLGVSISGLARGGVTEALTTAE 80

                          90       100
                  ....*....|....*....|....*..
gi 1080839401  81 IKDLLEQMPEWLEAARESMAKQRVEAA 107
Cdd:pfam19460  81 IKALLAEPPEWLVRERATQAEVRAEEA 107
 
Name Accession Description Interval E-value
DUF5997 pfam19460
Family of unknown function (DUF5997); This entry represents a member of a biosynthetic gene ...
 1-107 8.60e-68

Family of unknown function (DUF5997); This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0001814) is described by MIBiG as an example of the following biosynthetic class, NRP (non-ribosomal peptide). This family includes a protein from the ulleungmycin biosynthetic gene cluster from Streptomyces sp. KCB13F003.


Pssm-ID: 466097  Cd Length: 108  Bit Score: 199.60  E-value: 8.60e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080839401   1 MKPLTAAKKLGIFLPATPEEFRTGEISHAQFAELQSNPPEWLAELRRNGPHPRPEVARKLGITITALKKNDMDKPLTTAE 80
Cdd:pfam19460   1 MKPATAAKKLGIYLPATPEEFQEGPVTRAELNELQANPPEWLAELRRNGPHPRPVVARKLGVSISGLARGGVTEALTTAE 80

                          90       100
                  ....*....|....*....|....*..
gi 1080839401  81 IKDLLEQMPEWLEAARESMAKQRVEAA 107
Cdd:pfam19460  81 IKALLAEPPEWLVRERATQAEVRAEEA 107
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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