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Conserved domains on  [gi|1080980204|gb|OFR37933|]
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phosphate ABC transporter, permease protein PstA [Staphylococcus sp. HMSC063F02]

Protein Classification

PstA family ABC transporter permease( domain architecture ID 11426443)

PstA family ABC transporter permease is the transmembrane subunit (TM) found in periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporters; similar to phosphate transport system permease protein PstA

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PstA COG0581
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
42-306 6.43e-96

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


:

Pssm-ID: 440346 [Multi-domain]  Cd Length: 259  Bit Score: 283.85  E-value: 6.43e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080980204  42 FALIVLAALLIQTLVKGVGHLTPEFFTSFSSSTPSQAGIKGALAGTLWLMITIIPISIILGVGTAIYLEEYARDNMFTSF 121
Cdd:COG0581     1 LALLPLVWILGTVLVKGLPALSWEFLTSSPSPGPEGGGILPAIVGTLLLVLLATLIAVPLGVLAAIYLAEYARGGRLARL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080980204 122 VKICISNLAGVPSIVFGLLGLTLFVRGAGieslsLGNTVIAAALTMSLLILPIIIVSSQEAIRAVPNSVREASYGLGGNK 201
Cdd:COG0581    81 IRFAIDVLAGVPSIVYGLFGYALFVLTLG-----LGFSLLAGALALALLMLPVVIRTTEEALRLVPNSLREASYALGATK 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080980204 202 WQTIRKVVLPAALPGILTGFILSLSRALGETAPLILIGIPTIFLavPSGLFSMFTALPTQIYTWAKMPQAEFQNVASAGI 281
Cdd:COG0581   156 WQTIRKVVLPAALPGILTGVILAIARAAGETAPLLFTAGVSPFL--PLSLFDPFATLPVHIYNLASSPYPAAQELAWAAA 233
                         250       260
                  ....*....|....*....|....*
gi 1080980204 282 IVLLVILLLMNGLAIFLRNKFSRKY 306
Cdd:COG0581   234 LVLLLLVLLLNLLARLLRRRFRKKL 258
 
Name Accession Description Interval E-value
PstA COG0581
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
42-306 6.43e-96

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440346 [Multi-domain]  Cd Length: 259  Bit Score: 283.85  E-value: 6.43e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080980204  42 FALIVLAALLIQTLVKGVGHLTPEFFTSFSSSTPSQAGIKGALAGTLWLMITIIPISIILGVGTAIYLEEYARDNMFTSF 121
Cdd:COG0581     1 LALLPLVWILGTVLVKGLPALSWEFLTSSPSPGPEGGGILPAIVGTLLLVLLATLIAVPLGVLAAIYLAEYARGGRLARL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080980204 122 VKICISNLAGVPSIVFGLLGLTLFVRGAGieslsLGNTVIAAALTMSLLILPIIIVSSQEAIRAVPNSVREASYGLGGNK 201
Cdd:COG0581    81 IRFAIDVLAGVPSIVYGLFGYALFVLTLG-----LGFSLLAGALALALLMLPVVIRTTEEALRLVPNSLREASYALGATK 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080980204 202 WQTIRKVVLPAALPGILTGFILSLSRALGETAPLILIGIPTIFLavPSGLFSMFTALPTQIYTWAKMPQAEFQNVASAGI 281
Cdd:COG0581   156 WQTIRKVVLPAALPGILTGVILAIARAAGETAPLLFTAGVSPFL--PLSLFDPFATLPVHIYNLASSPYPAAQELAWAAA 233
                         250       260
                  ....*....|....*....|....*
gi 1080980204 282 IVLLVILLLMNGLAIFLRNKFSRKY 306
Cdd:COG0581   234 LVLLLLVLLLNLLARLLRRRFRKKL 258
3a0107s02c TIGR00974
phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of ...
35-304 1.29e-78

phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of permease proteins in the ABC (high affinity) phosphate transporter. In a number of species, this permease is fused with the PtsC protein (TIGR02138). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273373  Cd Length: 271  Bit Score: 240.22  E-value: 1.29e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080980204  35 LFFACIVFALIVLAALLIQTLVKGVGHLTPEFFTSFSSSTPSQAGIKGALAGTLWLMITIIPISIILGVGTAIYLEEYAR 114
Cdd:TIGR00974   7 ISLLSALLALLPLIWILWYILIKGLPALNLEFFTKSPTPTGAEGGIGPAIVGTLLLTLLAIVIAVPLGIGAAIYLAEYAN 86
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080980204 115 DNMFTSFVKICISNLAGVPSIVFGLLGLTLFVRGAgiesLSLGNTVIAAALTMSLLILPIIIVSSQEAIRAVPNSVREAS 194
Cdd:TIGR00974  87 GSRFTKIIRFAVDILAGVPSIVVGLFGYGFFVLTY----LGGGFSLLAGALALALLILPVIIRTTEEALKAVPKDLREAS 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080980204 195 YGLGGNKWQTIRKVVLPAALPGILTGFILSLSRALGETAPLILIGIptIFLAVPSGLFSMFTALPTQIYTWA-KMPQAEF 273
Cdd:TIGR00974 163 LALGATKWQTIFKVVLPAALPGILTGIILSIARAAGETAPLLFTAG--GSAFTPPNLFDPFATLPVLIYNLAsEGPYVEA 240
                         250       260       270
                  ....*....|....*....|....*....|.
gi 1080980204 274 QNVASAGIIVLLVILLLMNGLAIFLRNKFSR 304
Cdd:TIGR00974 241 QQLAWAAALVLIVLVLLLNLIARLLRRRFKK 271
pstA PRK11268
phosphate ABC transporter permease PstA;
23-301 1.58e-30

phosphate ABC transporter permease PstA;


Pssm-ID: 183065 [Multi-domain]  Cd Length: 295  Bit Score: 116.32  E-value: 1.58e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080980204  23 SSRDKKNSLNKWLFFACIVFALIVLAALLIQTLVKGVGHLTPEFFTSFS-SSTPSQAGIKGALAGTLWLMITIIPISIIL 101
Cdd:PRK11268   21 ARRRLKNRIALTLSMATMAFGLFWLIWILMSTITLGIDGMSLALFTEMTpPPNTAGGGLANAIAGSGLLILWATVVGTPL 100
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080980204 102 GVGTAIYLEEYARDNMFTSFVKICISNLAGVPSIVFGLLGLTLFVrgAGIESLSLGNTVIAAALtmslLILPIIIVSSQE 181
Cdd:PRK11268  101 GIMAGIYLAEYGRKSWLAEVIRFINDILLSAPSIVVGLFVYTIVV--AQMEHFSGWAGVIALAL----LQIPIVIRTTEN 174
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080980204 182 AIRAVPNSVREASYGLGGNKWQTIRKVVLPAALPGILTGFILSLSRALGETAPLILIGIPTIFLAvpSGLFSMFTALPTQ 261
Cdd:PRK11268  175 MLKLVPDSLREAAYALGTPKWKMISAITLKASVSGIMTGVLLAIARIAGETAPLLFTALSNQFWS--TDMMQPIANLPVT 252
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 1080980204 262 IYTWAKMPQAEFQNVASAGIIVLLVILLLMNGLA-IFLRNK 301
Cdd:PRK11268  253 IFKFAMSPFAEWQQLAWAGVLLITLCVLLLNILArVVFAKK 293
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
84-239 6.13e-14

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 68.84  E-value: 6.13e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080980204  84 LAGTLWLMITIIPISIILGVGTAIYLEEYARdnMFTSFVKICISNLAGVPSIVFGLLGLTLFVRGAGieSLSLGNTVIAA 163
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARKRG--KLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLG--WGILPGLGLPA 76
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1080980204 164 ALTMSLLILPIIIVSSQEAIRAVPNSVREASYGLGGNKWQTIRKVVLPAALPGILTGFILSLSRALGETAPLILIG 239
Cdd:cd06261    77 LILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLG 152
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
121-258 1.16e-10

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 59.62  E-value: 1.16e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080980204 121 FVKICISNLAGVPSIVFGLLGLTLFVRGAgieslsLGNTVIAAALTMSLLILPIIIVSSQEAIRAVPNSVREASYGLGGN 200
Cdd:pfam00528  19 LLRPLIDLLQALPSFVLAILLVVIAILSI------LGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGAS 92
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1080980204 201 KWQTIRKVVLPAALPGILTGFILSLSRALGETA-PLILIGIPTIFLAVPSGLFSMFTAL 258
Cdd:pfam00528  93 RWQIFRKIILPNALPPILTGLALAFGGALGGAVlLEFLGSWPGLGLLLIEAILGYDYPE 151
ABC_perm1 NF038017
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ...
101-239 2.38e-06

ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.


Pssm-ID: 411610 [Multi-domain]  Cd Length: 184  Bit Score: 47.16  E-value: 2.38e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080980204 101 LGVGTAIYLEEYARDNMFTSFVKIcisnLAGVPSIVFGLLGLTLFVRGAGIESLSLGNTVIAAALTMSLLILPIIIVSSQ 180
Cdd:NF038017   17 IPLGALLALRRFPGRRLVISLLNT----LMGLPPVVVGLIVYLLLSRSGPLGFLGLLYTPTAMIIAQAVLALPIVAGLTL 92
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1080980204 181 EAIRAVPNSVREASYGLGGNKWQTIRKVVLPAALpGILTGFILSLSRALGETAPLILIG 239
Cdd:NF038017   93 AAVQGLDPELRLQILSLGATRWQALWTLLKEARF-ALLAAVLAGFGRAISEVGAVMMVG 150
 
Name Accession Description Interval E-value
PstA COG0581
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
42-306 6.43e-96

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440346 [Multi-domain]  Cd Length: 259  Bit Score: 283.85  E-value: 6.43e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080980204  42 FALIVLAALLIQTLVKGVGHLTPEFFTSFSSSTPSQAGIKGALAGTLWLMITIIPISIILGVGTAIYLEEYARDNMFTSF 121
Cdd:COG0581     1 LALLPLVWILGTVLVKGLPALSWEFLTSSPSPGPEGGGILPAIVGTLLLVLLATLIAVPLGVLAAIYLAEYARGGRLARL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080980204 122 VKICISNLAGVPSIVFGLLGLTLFVRGAGieslsLGNTVIAAALTMSLLILPIIIVSSQEAIRAVPNSVREASYGLGGNK 201
Cdd:COG0581    81 IRFAIDVLAGVPSIVYGLFGYALFVLTLG-----LGFSLLAGALALALLMLPVVIRTTEEALRLVPNSLREASYALGATK 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080980204 202 WQTIRKVVLPAALPGILTGFILSLSRALGETAPLILIGIPTIFLavPSGLFSMFTALPTQIYTWAKMPQAEFQNVASAGI 281
Cdd:COG0581   156 WQTIRKVVLPAALPGILTGVILAIARAAGETAPLLFTAGVSPFL--PLSLFDPFATLPVHIYNLASSPYPAAQELAWAAA 233
                         250       260
                  ....*....|....*....|....*
gi 1080980204 282 IVLLVILLLMNGLAIFLRNKFSRKY 306
Cdd:COG0581   234 LVLLLLVLLLNLLARLLRRRFRKKL 258
3a0107s02c TIGR00974
phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of ...
35-304 1.29e-78

phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of permease proteins in the ABC (high affinity) phosphate transporter. In a number of species, this permease is fused with the PtsC protein (TIGR02138). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273373  Cd Length: 271  Bit Score: 240.22  E-value: 1.29e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080980204  35 LFFACIVFALIVLAALLIQTLVKGVGHLTPEFFTSFSSSTPSQAGIKGALAGTLWLMITIIPISIILGVGTAIYLEEYAR 114
Cdd:TIGR00974   7 ISLLSALLALLPLIWILWYILIKGLPALNLEFFTKSPTPTGAEGGIGPAIVGTLLLTLLAIVIAVPLGIGAAIYLAEYAN 86
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080980204 115 DNMFTSFVKICISNLAGVPSIVFGLLGLTLFVRGAgiesLSLGNTVIAAALTMSLLILPIIIVSSQEAIRAVPNSVREAS 194
Cdd:TIGR00974  87 GSRFTKIIRFAVDILAGVPSIVVGLFGYGFFVLTY----LGGGFSLLAGALALALLILPVIIRTTEEALKAVPKDLREAS 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080980204 195 YGLGGNKWQTIRKVVLPAALPGILTGFILSLSRALGETAPLILIGIptIFLAVPSGLFSMFTALPTQIYTWA-KMPQAEF 273
Cdd:TIGR00974 163 LALGATKWQTIFKVVLPAALPGILTGIILSIARAAGETAPLLFTAG--GSAFTPPNLFDPFATLPVLIYNLAsEGPYVEA 240
                         250       260       270
                  ....*....|....*....|....*....|.
gi 1080980204 274 QNVASAGIIVLLVILLLMNGLAIFLRNKFSR 304
Cdd:TIGR00974 241 QQLAWAAALVLIVLVLLLNLIARLLRRRFKK 271
PstC COG0573
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
15-262 1.43e-45

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440338 [Multi-domain]  Cd Length: 303  Bit Score: 156.02  E-value: 1.43e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080980204  15 KSKVEKNLSSRDKKNSLNKWLFFACIVFALIVLAALLIQTLVKGVGHLTPEFFTS-------FSSSTPSQAGIKGALAGT 87
Cdd:COG0573     3 SSRLRPRRRRRRLGDRLFRGLLLLAALLSILILLLIVLFLLIESLPAFQEVGLLEfltgtewNPVSSNGEFGILPLIVGT 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080980204  88 LWLMITIIPISIILGVGTAIYLEEYARDNMfTSFVKICISNLAGVPSIVFGLLGLTLFVR--GAGIESLSLGNTVIAAAL 165
Cdd:COG0573    83 LLVSLIALLIAVPLGLGIAIFLSEYAPPRL-RRILKPAIELLAGIPSVVYGFWGLFVLVPllRDLFPWPPSGFSLLTAGI 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080980204 166 TMSLLILPIIIVSSQEAIRAVPNSVREASYGLGGNKWQTIRKVVLPAALPGILTGFILSLSRALGET-APLILIGIPTIF 244
Cdd:COG0573   162 VLAIMILPTITSLSRDALRAVPRSLREAALALGATRWETIRKVVLPAARSGIIAAVILGLGRALGETmAVLMVAGNAPQI 241
                         250
                  ....*....|....*...
gi 1080980204 245 lavPSGLFSMFTALPTQI 262
Cdd:COG0573   242 ---PFSLFDPGRTLTALI 256
phosphate_pstC TIGR02138
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity ...
33-262 6.35e-35

phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273992 [Multi-domain]  Cd Length: 295  Bit Score: 128.15  E-value: 6.35e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080980204  33 KWLFFACIVFALIVLAALLIQTLVKGV---------GHLTPEFFTSFSSSTPSQAGIKGALAGTLWLMITIIPISIILGV 103
Cdd:TIGR02138   5 KGLLLFSAVIIVLVLLLIVLFLLYEAIpafekngilNFLTGTVWDPGSGPVQEQYGALPLIVGTLITSLIALLIAVPVGI 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080980204 104 GTAIYLEEYArDNMFTSFVKICISNLAGVPSIVFGLLGLTLFV------------RGAGIESLSLGnTVIAAALTMSLLI 171
Cdd:TIGR02138  85 GIAIFLSEIA-PKRVRSVLKPVVELLAGIPSVVYGFWGLFVLVpflkphfqpflgSNLGLIPLFGG-PILTAGIVLAIMI 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080980204 172 LPIIIVSSQEAIRAVPNSVREASYGLGGNKWQTIRKVVLPAALPGILTGFILSLSRALGET-APLILIGipTIFLAVPSG 250
Cdd:TIGR02138 163 LPTIASISRDALRAVPRSYKEASYALGATKWETIRRVILPAARSGIVGAVVLGLGRALGETmAVTMVIG--NVFPISPLS 240
                         250
                  ....*....|..
gi 1080980204 251 LFSMFTALPTQI 262
Cdd:TIGR02138 241 LFDPGTTITSLI 252
pstA PRK11268
phosphate ABC transporter permease PstA;
23-301 1.58e-30

phosphate ABC transporter permease PstA;


Pssm-ID: 183065 [Multi-domain]  Cd Length: 295  Bit Score: 116.32  E-value: 1.58e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080980204  23 SSRDKKNSLNKWLFFACIVFALIVLAALLIQTLVKGVGHLTPEFFTSFS-SSTPSQAGIKGALAGTLWLMITIIPISIIL 101
Cdd:PRK11268   21 ARRRLKNRIALTLSMATMAFGLFWLIWILMSTITLGIDGMSLALFTEMTpPPNTAGGGLANAIAGSGLLILWATVVGTPL 100
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080980204 102 GVGTAIYLEEYARDNMFTSFVKICISNLAGVPSIVFGLLGLTLFVrgAGIESLSLGNTVIAAALtmslLILPIIIVSSQE 181
Cdd:PRK11268  101 GIMAGIYLAEYGRKSWLAEVIRFINDILLSAPSIVVGLFVYTIVV--AQMEHFSGWAGVIALAL----LQIPIVIRTTEN 174
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080980204 182 AIRAVPNSVREASYGLGGNKWQTIRKVVLPAALPGILTGFILSLSRALGETAPLILIGIPTIFLAvpSGLFSMFTALPTQ 261
Cdd:PRK11268  175 MLKLVPDSLREAAYALGTPKWKMISAITLKASVSGIMTGVLLAIARIAGETAPLLFTALSNQFWS--TDMMQPIANLPVT 252
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 1080980204 262 IYTWAKMPQAEFQNVASAGIIVLLVILLLMNGLA-IFLRNK 301
Cdd:PRK11268  253 IFKFAMSPFAEWQQLAWAGVLLITLCVLLLNILArVVFAKK 293
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
132-231 1.11e-14

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 72.48  E-value: 1.11e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080980204 132 VPSIVFGLLGLTLFVRGAGIESL--SLG----NTVIAAALTMSLLILPIIIVSSQEAIRAVPNSVREASYGLGGNKWQTI 205
Cdd:COG0555   102 LPTAVAGIALLLLFGPNGWLGQLlaPLGikvaFTPLGIVLAQTFVSLPFVVRTVQPVLEELDPELEEAAATLGASRWQTF 181
                          90       100
                  ....*....|....*....|....*.
gi 1080980204 206 RKVVLPAALPGILTGFILSLSRALGE 231
Cdd:COG0555   182 RRVILPLLLPALLTGFALAFARALGE 207
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
84-239 6.13e-14

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 68.84  E-value: 6.13e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080980204  84 LAGTLWLMITIIPISIILGVGTAIYLEEYARdnMFTSFVKICISNLAGVPSIVFGLLGLTLFVRGAGieSLSLGNTVIAA 163
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARKRG--KLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLG--WGILPGLGLPA 76
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1080980204 164 ALTMSLLILPIIIVSSQEAIRAVPNSVREASYGLGGNKWQTIRKVVLPAALPGILTGFILSLSRALGETAPLILIG 239
Cdd:cd06261    77 LILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLG 152
ModB COG4149
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and ...
133-231 2.12e-13

ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, permease component ModB is part of the Pathway/BioSystem: Molybdopterin biosynthesis


Pssm-ID: 443320 [Multi-domain]  Cd Length: 223  Bit Score: 68.15  E-value: 2.12e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080980204 133 PSIVFGLLGLTLFVR----GAGIESL---SLGNTVIAAALTMSLLILPIIIVSSQEAIRAVPNSVREASYGLGGNKWQTI 205
Cdd:COG4149    56 PPTVLGFYLLLLFGRngplGQLLEELfgiSLVFTWTGAVLASVVVSLPLMVQPLRAAFEAVDPRLEEAARTLGASPWRVF 135
                          90       100
                  ....*....|....*....|....*.
gi 1080980204 206 RKVVLPAALPGILTGFILSLSRALGE 231
Cdd:COG4149   136 FRVTLPLAKPGILAGAVLAFARALGE 161
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
23-263 1.83e-11

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 64.41  E-value: 1.83e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080980204  23 SSRDKKNSLNKWLFFACIVFALIVLAALLIQTLVKGVGHLTPEFFTSFS----SSTPSQAGIKGALAGTLWLMITIIPIS 98
Cdd:COG1178   275 ARRPRRVKLGRWRWLALALCLLLVLLGLLLPLLALLLWSLTKALDDNLTldnyRFVLLDPSLLRALLNSLLLALLAALLA 354
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080980204  99 IILGVGTAIYLEEyaRDNMFTSFVKICISNLAGVPSIVfglLGLTLFVRGAGIESLSLGNTVIAAALTMSLLILPIIIVS 178
Cdd:COG1178   355 VLLALLLAYLVRR--RRGRLARLLDRLAMLPYAVPGIV---LGLGLLLLFNRPLPLLLYGTLAILVLAYVVRFLPFALRS 429
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080980204 179 SQEAIRAVPNSVREASYGLGGNKWQTIRKVVLPAALPGILTGFILSLSRALGE-TApliligipTIFLAVPSglfsmFTA 257
Cdd:COG1178   430 LEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKElSA--------TLLLRPPG-----FET 496

                  ....*.
gi 1080980204 258 LPTQIY 263
Cdd:COG1178   497 LAVLIY 502
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
132-264 4.99e-11

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 61.67  E-value: 4.99e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080980204 132 VPSIVFGLLGLTLFVRgagiesLSLGNTVIAAALTMSLLILPIIIVSSQEAIRAVPNSVREASYGLGGNKWQTIRKVVLP 211
Cdd:COG1177   109 VPGIVLGVALLLLFSA------LGLSGGLWGLILAHVVFTLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLP 182
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1080980204 212 AALPGILTGFILSLSRALGEtapLILigipTIFLAVPSglfsmFTALPTQIYT 264
Cdd:COG1177   183 LIAPGILAGALLAFTLSFDE---FVI----TLFLAGPG-----VTTLPVYIYS 223
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
152-247 8.95e-11

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 61.32  E-value: 8.95e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080980204 152 ESLSLGNTVIAAALTMSLLILPIIIVSSQEAIRAVPNSVREASYGLGGNKWQTIRKVVLPAALPGILTGFILSLSRALGE 231
Cdd:COG1176   146 EPLRLLYTEFAVVIGLVYVYLPFMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGA 225
                          90
                  ....*....|....*..
gi 1080980204 232 -TAPLILIGIPTIFLAV 247
Cdd:COG1176   226 fVTPALLGGGKVLMIGN 242
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
121-258 1.16e-10

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 59.62  E-value: 1.16e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080980204 121 FVKICISNLAGVPSIVFGLLGLTLFVRGAgieslsLGNTVIAAALTMSLLILPIIIVSSQEAIRAVPNSVREASYGLGGN 200
Cdd:pfam00528  19 LLRPLIDLLQALPSFVLAILLVVIAILSI------LGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGAS 92
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1080980204 201 KWQTIRKVVLPAALPGILTGFILSLSRALGETA-PLILIGIPTIFLAVPSGLFSMFTAL 258
Cdd:pfam00528  93 RWQIFRKIILPNALPPILTGLALAFGGALGGAVlLEFLGSWPGLGLLLIEAILGYDYPE 151
modB_ABC TIGR02141
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, ...
133-239 2.29e-10

molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterized in E. coli, Staphylococcus carnosus, Rhodobacter capsulatus and Azotobacter vinlandii. Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model. [Transport and binding proteins, Anions]


Pssm-ID: 273993 [Multi-domain]  Cd Length: 208  Bit Score: 59.18  E-value: 2.29e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080980204 133 PSIVFGLLGLTLFVRGAGIESL------SLGNTVIAAALTMSLLILPIIIVSSQEAIRAVPNSVREASYGLGGNKWQTIR 206
Cdd:TIGR02141  47 PPTVLGFYLLIAFGPNGPIGKLlelfgiSLVFTFTGAVLASVIVSFPLMVQPIRAAFEAVDPDLEEAARTLGASESQTFL 126
                          90       100       110
                  ....*....|....*....|....*....|...
gi 1080980204 207 KVVLPAALPGILTGFILSLSRALGETAPLILIG 239
Cdd:TIGR02141 127 KVTLPLAFPGLLAGAVLSFARALGEFGATLMFA 159
pstC PRK11275
phosphate ABC transporter permease PstC;
104-232 3.29e-10

phosphate ABC transporter permease PstC;


Pssm-ID: 183070  Cd Length: 319  Bit Score: 60.09  E-value: 3.29e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080980204 104 GTAIYLEEYArDNMFTSFVKICISNLAGVPSIVFGLLGLTLF--------------------VRGAGIESLSLGNTVIAA 163
Cdd:PRK11275   95 GIALFLTELA-PGWLKRPLGIAIELLAAIPSIVYGMWGLFVFaplfatyfqepvgnvlsnipIVGALFSGPAFGIGILAA 173
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1080980204 164 ALTMSLLILPIIIVSSQEAIRAVPNSVREASYGLGGNKWQTIRKVVLPAALPGILTGFILSLSRALGET 232
Cdd:PRK11275  174 GVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGVMLGLGRALGET 242
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
156-229 1.38e-09

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 57.47  E-value: 1.38e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1080980204 156 LGNTVIAAALTMSLLILPIIIVSSQEAIRAVPNSVREASYGLGGNKWQTIRKVVLPAALPGILTGFILSLSRAL 229
Cdd:COG0600   121 FGIGEASKIFVIFLGAFFPILLNTAAGVRSVDPELLELARSLGASRWQILRKVVLPAALPYIFTGLRIALGLAW 194
cysT CHL00187
sulfate transport protein; Provisional
159-255 2.29e-09

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 56.56  E-value: 2.29e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080980204 159 TVIAAALTMSLLILPIIIVSSQEAIRAVPNSVREASYGLGGNKWQTIRKVVLPAALPGILTGFILSLSRALGETAPLILI 238
Cdd:CHL00187  136 TKLGVLLAMIFVSFPFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALTFSRAIGEYGSIVII 215
                          90
                  ....*....|....*....
gi 1080980204 239 G--IPTIFLAVPSGLFSMF 255
Cdd:CHL00187  216 SsnIPFKDLVASVLIFQSL 234
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
23-243 1.40e-08

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 55.55  E-value: 1.40e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080980204  23 SSRDKKNSLNKWLFFACIVFALIV--LAALLIQTLVKGVGHLtpefftsfsSSTPSQAGIKGALAGTLWLMITIIPISII 100
Cdd:COG1178     2 STRPRRRPRLLLLLLALLLALLVLlpLLALLLRAFTDGLANF---------WALLSDPYLWRALGNTLLLALLVTLLSLL 72
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080980204 101 LGVGTAIYLeeyARDNMF--TSFVKICISNLAgVPSIV--FGLLGL--------TLFVRGAGIESLSLGnTVIAAALTMS 168
Cdd:COG1178    73 LGVPLAWLL---ARTDFPgrRLLRWLLLLPLA-LPPYVvaLAWIALfgpngllnTLLRALFGLEPPDIY-GLGGIILVLV 147
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1080980204 169 LLILPIIIVSSQEAIRAVPNSVREASYGLGGNKWQTIRKVVLPAALPGILTGFILSLSRALGE-TAPLIL-IGIPTI 243
Cdd:COG1178   148 LFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADfGTPLVLgGGYTTL 224
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
158-238 2.82e-08

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 53.99  E-value: 2.82e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080980204 158 NTVIAAALTMSLLILPIIIVSSQEAIRAVPNSVREASYGLGGNKWQTIRKVVLPAALPGILTGFILSLSRALGETAPLIL 237
Cdd:PRK10971  138 YTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLAGVALSFTRSLGEFGAVIF 217

                  .
gi 1080980204 238 I 238
Cdd:PRK10971  218 I 218
potB PRK09497
spermidine/putrescine ABC transporter membrane protein; Reviewed
138-230 2.04e-06

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 181910  Cd Length: 285  Bit Score: 48.15  E-value: 2.04e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080980204 138 GLLGLTLFVRGAGIESLSLGNTVIAAALTMSLLILPIIIVSSQEAIRAVPNSVREASYGLGGNKWQTIRKVVLPAALPGI 217
Cdd:PRK09497  128 GYLNEFLLWLGVIDTPIRIMFTESAVIIGLVYILLPFMVLPLYSSIEKLDKPLLEAARDLGANKLQTFIRIIIPLTMPGI 207
                          90
                  ....*....|...
gi 1080980204 218 LTGFILSLSRALG 230
Cdd:PRK09497  208 IAGCLLVLLPAMG 220
ABC_perm1 NF038017
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ...
101-239 2.38e-06

ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.


Pssm-ID: 411610 [Multi-domain]  Cd Length: 184  Bit Score: 47.16  E-value: 2.38e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080980204 101 LGVGTAIYLEEYARDNMFTSFVKIcisnLAGVPSIVFGLLGLTLFVRGAGIESLSLGNTVIAAALTMSLLILPIIIVSSQ 180
Cdd:NF038017   17 IPLGALLALRRFPGRRLVISLLNT----LMGLPPVVVGLIVYLLLSRSGPLGFLGLLYTPTAMIIAQAVLALPIVAGLTL 92
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1080980204 181 EAIRAVPNSVREASYGLGGNKWQTIRKVVLPAALpGILTGFILSLSRALGETAPLILIG 239
Cdd:NF038017   93 AAVQGLDPELRLQILSLGATRWQALWTLLKEARF-ALLAAVLAGFGRAISEVGAVMMVG 150
modB PRK09421
molybdate ABC transporter permease subunit;
133-231 4.12e-06

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 46.84  E-value: 4.12e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080980204 133 PSIVFGLLGLTLFVRGAGIES-------LSLGNTVIAAALTMSLLILPIIIVSSQEAIRAVPNSVREASYGLGGNKWQTI 205
Cdd:PRK09421   58 PPVVTGYLLLISMGRRGFIGQwlyewfgISFAFSWRGAALAAAVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVF 137
                          90       100
                  ....*....|....*....|....*.
gi 1080980204 206 RKVVLPAALPGILTGFILSLSRALGE 231
Cdd:PRK09421  138 FTITLPLTLPGIIAGTVLAFARSLGE 163
COG4590 COG4590
ABC-type uncharacterized transport system, permease component [General function prediction ...
167-232 5.58e-06

ABC-type uncharacterized transport system, permease component [General function prediction only];


Pssm-ID: 443647 [Multi-domain]  Cd Length: 757  Bit Score: 47.92  E-value: 5.58e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1080980204 167 MSLLILPIIIVSSQEAIRAVPNSVREASYGLGGNKWQTIRKVVLPAALPGILTGFILSLSRALGET 232
Cdd:COG4590   615 MGFAVIPTIFSIAEDAIFSVPKHLTQGSLALGATPWQTLTRVVLLTASPGIFSAVMIGLGRAVGET 680
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
133-229 3.26e-05

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 44.59  E-value: 3.26e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080980204 133 PSIVFGLLGLTLFVrgagIESLSLGN-TVIAAALTmslLILPIIIVSSQEAIRAVPNSVREASYGLGGNKWQTIRKVVLP 211
Cdd:PRK09500  106 PDIVMAISLLVLFM----LLGIQLGFwSLLFAHIT---FCLPFVVVTVYSRLKGFDVRMLEAAKDLGASEFTILRKIILP 178
                          90
                  ....*....|....*...
gi 1080980204 212 AALPGILTGFILSLSRAL 229
Cdd:PRK09500  179 LALPAVAAGWLLSFTLSL 196
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
182-239 1.40e-03

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 39.60  E-value: 1.40e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1080980204 182 AIRAVPNSVREASYGLGGNKWQTIRKVVLPAALPGILTGFILSLSRALGETAPLILIG 239
Cdd:PRK15050  183 AFAQLDARQLEAAASLGASPWRVARRVILPEAWPALAAGGSLCLLLTLNEFGIVLFTG 240
PRK10160 PRK10160
taurine ABC transporter permease TauC;
165-225 6.32e-03

taurine ABC transporter permease TauC;


Pssm-ID: 182276  Cd Length: 275  Bit Score: 37.46  E-value: 6.32e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1080980204 165 LTMSLLILPIIIVSSQEAIRAVPNSVREASYGLGGNKWQTIRKVVLPAALPGILTGFILSL 225
Cdd:PRK10160  147 LLIYLAIFAPVAMSALAGVKSAQQVRIRAAQSLGASRAQVLWFVILPGALPEILTGLRIGL 207
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
153-224 8.71e-03

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 37.00  E-value: 8.71e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1080980204 153 SLSLGNTVIAAALTMSLLILPIIIVSSQEAIRAVPNSVREASYGLGGNKWQTIRKVVLPAALPGILTGFILS 224
Cdd:COG0395   137 QLGLLNTYWGLILPYLAFGLPFGIFLLRQFFRSIPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFT 208
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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