|
Name |
Accession |
Description |
Interval |
E-value |
| PRK05563 |
PRK05563 |
DNA polymerase III subunits gamma and tau; Validated |
1-566 |
0e+00 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235505 [Multi-domain] Cd Length: 559 Bit Score: 861.10 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 1 MDYQALYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSDDGEPCNECAICK 80
Cdd:PRK05563 1 MMYQALYRKWRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 81 GITQGTNNDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPH 160
Cdd:PRK05563 81 AITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 161 KIPPTIISRAQRFDFKAISSDQIIDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMDQAIAFGDERLTLQDALNV 240
Cdd:PRK05563 161 KIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMRDALSILDQAISFGDGKVTYEDALEV 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 241 TGSVDEAALNELFNDIVKSDVKAAFNRYHHFISEGKEVNRLINDMIYFVRDTIMNKTSNESVHF-----------ESLIH 309
Cdd:PRK05563 241 TGSVSQEALDDLVDAIVEGDVAKALKILEELLDEGKDPNRFIEDLIYYLRDLLLVKTSPELEILdestendelfkELSEK 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 310 FDLDMLYRMIDIINDTLVSIRFSVNQSVHFEVLLVKLAEMIKTQPqtvqnvatasvANEPDNEMLLQRLEQLENELKTLK 389
Cdd:PRK05563 321 LDIERLYRMIDILNDAQQQIKWTNQPRIYLEVALVKLCEQAAASP-----------EYDTELEVLLQRVEQLEQELKQLK 389
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 390 EQGIKTNKVSQQPKKPTRTIQRSKNTFSMQQIAKVLDKANKDDIKLLKNHWQEVIDHAKSNdKKSLVSLLLNSEPVAASE 469
Cdd:PRK05563 390 AQPVGVAPEQKEKKKEKKKNKKKKYKVPRGKIYKVLKEATRQDLELLKNVWGEILESLKAQ-RKSLRALLVNSEPVAASE 468
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 470 DHVLVKFDEEIHCEIVNKDDEKRNNIESVVCNIVNKTVKVVGVPADQWLRVRAEYLQNRNTNETHQSEKQSTqqsqqiDI 549
Cdd:PRK05563 469 DTVVLAFEYEIHFEKAMLDKELNDTIENILSKLLGKSVEIVAVPEDEWQKIREEFLQKHKNEEEEEEEEEEL------PL 542
|
570
....*....|....*..
gi 1081111669 550 AQKAKDLFGEETVHLVD 566
Cdd:PRK05563 543 IPEAKELFGEDLVEIID 559
|
|
| dnaX_nterm |
TIGR02397 |
DNA polymerase III, subunit gamma and tau; This model represents the well-conserved first ~ ... |
3-347 |
1.57e-180 |
|
DNA polymerase III, subunit gamma and tau; This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 274111 [Multi-domain] Cd Length: 355 Bit Score: 512.50 E-value: 1.57e-180
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 3 YQALYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSDDGEPCNECAICKGI 82
Cdd:TIGR02397 1 YQVLARKYRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 83 TQGTNNDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKI 162
Cdd:TIGR02397 81 NSGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 163 PPTIISRAQRFDFKAISSDQIIDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMDQAIAFGDERLTLQDALNVTG 242
Cdd:TIGR02397 161 PATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSLRDALSLLDQLISFGNGKITYEDVNELLG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 243 SVDEAALNELFNDIVKSDVKAAFNRYHHFISEGKEVNRLINDMIYFVRDTIMNKTSNESV---------HFESL-IHFDL 312
Cdd:TIGR02397 241 LVDDEKLIELLEAILNKDTAEALKILDEILESGVDPEKFLEDLIEILRDLLLIKKTPSNLlavleseqeFLKELaLKLSL 320
|
330 340 350
....*....|....*....|....*....|....*
gi 1081111669 313 DMLYRMIDIINDTLVSIRFSVNQSVHFEVLLVKLA 347
Cdd:TIGR02397 321 EFLLRLLDILLEALKDLRFSNDPRIWLEMTLLRLL 355
|
|
| DnaX |
COG2812 |
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair]; |
1-348 |
6.53e-163 |
|
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair];
Pssm-ID: 442061 [Multi-domain] Cd Length: 340 Bit Score: 467.36 E-value: 6.53e-163
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 1 MDYQAlyrmyrPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSDDGEPCNECAICK 80
Cdd:COG2812 1 MSYQV------PQTFDDVVGQEHVVRTLKNALASGRLAHAYLFTGPRGVGKTTLARILAKALNCENGPTGEPCGECESCR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 81 GITQGTNNDVIEIDA-ASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEP 159
Cdd:COG2812 75 AIAAGSHPDVIEIDAeASNIGVDDIRELIEKVSYAPVEGRYKVYIIDEAHMLTTEAFNALLKTLEEPPPHVVFILATTEP 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 160 HKIPPTIISRAQRFDFKAISSDQIIDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMDQAIAFGderltLQDAln 239
Cdd:COG2812 155 QKLLPTILSRCQRFDFRRLPPEEIAEHLAKIAEREGIEIEPEALALIARAADGSMRDALSLLDQAIAFG-----LLDR-- 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 240 vtgsvdEAALNELFNDIVKSDVKAAFNRYHHFISEGKEVNRLINDMIYFVRDTIMNKTSNESVHFESLI----------H 309
Cdd:COG2812 228 ------RELLLDLLEALLAGDVAALLALAEELAKRGRDLKRFLDDLLSLLRDLLLLKLGPDAELLVNEDererlqelarR 301
|
330 340 350
....*....|....*....|....*....|....*....
gi 1081111669 310 FDLDMLYRMIDIINDTLVSIRFSVNQSVHFEVLLVKLAE 348
Cdd:COG2812 302 LSPERLLRAIQILLEARRELERNVNPRLALEMLLLRLAR 340
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
1-534 |
2.55e-130 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 393.02 E-value: 2.55e-130
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 1 MDYQALYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSD-DGEPCNECAIC 79
Cdd:PRK14950 1 MTVQVLYRKWRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDpKGRPCGTCEMC 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 80 KGITQGTNNDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEP 159
Cdd:PRK14950 81 RAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 160 HKIPPTIISRAQRFDFKAISSDQIIDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMDQAIAFGDERLTL---QD 236
Cdd:PRK14950 161 HKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENLLQQLATTYGGEISLsqvQS 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 237 ALNVTGSVDEAALNElfnDIVKSDVKAAFNRYHHFISEGKEVNRLINDMIYFVRD----------TIMNKTSNESVHFES 306
Cdd:PRK14950 241 LLGISGDEEVKALAE---ALLAKDLKAALRTLNAVAADGADLRQFTRDLVEYLRQvmllnsgadrSLLDLTADEKAALQK 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 307 LIH-FDLDMLYRMIDIINDTLVSIRFSVNQSVHFEVLLVK--LAEMIKTQPQTVQNVATASVANEPD-----NEMLLQRL 378
Cdd:PRK14950 318 VSQiANLEALTKWVKAFSQLDFQLRTTSYGQLPLELAVIEalLVPVPAPQPAKPTAAAPSPVRPTPApstrpKAAAAANI 397
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 379 EQLENELKTLKEQGIKTNKVSQQPKKPTRTIQRSKNTFSMQQIAKVLDK----------ANKDDIKL--LKNHWQEVIDH 446
Cdd:PRK14950 398 PPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAIPVDEKPKYTPpappkeeekaLIADGDVLeqLEAIWKQILRD 477
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 447 AKSNDKKslVSLLLNS--EPVAASEDHVLVKFDEEIHCEIVNKdDEKRNNIESVVCNIVNKTVKVVGVPADQWLRVRAEY 524
Cdd:PRK14950 478 VPPRSPA--VQALLSSgvRPVSVEKNTLTLSFKSKFHKDKIEE-PENRKITEELLSNFVGKTCAVRCTIEEKSEEPGDLR 554
|
570
....*....|
gi 1081111669 525 LQNRNTNETH 534
Cdd:PRK14950 555 EQIREARKDH 564
|
|
| PRK07133 |
PRK07133 |
DNA polymerase III subunits gamma and tau; Validated |
1-562 |
4.89e-129 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235943 [Multi-domain] Cd Length: 725 Bit Score: 394.18 E-value: 4.89e-129
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 1 MDYQALYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCLN-SDDGEPCNECaic 79
Cdd:PRK07133 3 MKYKALYRKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHkTDLLEPCQEC--- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 80 kgITQGTNN-DVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTE 158
Cdd:PRK07133 80 --IENVNNSlDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTE 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 159 PHKIPPTIISRAQRFDFKAISSDQIIDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMDQAIAFGDERLTLQDAL 238
Cdd:PRK07133 158 VHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDALSIAEQVSIFGNNKITLKNVE 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 239 NVTGSVDEAALNELFNDIVKSDVKAAFNRYHHFISEGKEVNRLINDMIYFVRDTIM-NKTSNESV----HFESL--IHFD 311
Cdd:PRK07133 238 ELFGLVSNENLINLLNLLYSKDIKEVLNILNQIKEQGIDPELLLISLINLVKEFIIfNKTKDNSLleyySEEDLekLKID 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 312 LDMLYRMIDIINDTLVSIRFSVNQSVHFEVLLVKL-------------AEMIKTQPQTVQNVATASVANEPDNEMLLQ-- 376
Cdd:PRK07133 318 DDFAYKFIEILFDLLKDLKISDNPNDTLEILIIKLlalseleeedeneIKFKKIEENSIDNLDIKEKKIENENDIEGKsd 397
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 377 ----RLEQLENELKTLKEQGIKTNK-VSQQPKKPTRTIQRSKNTFSmqqiakvLDKANKDDIKllknhwqEVIDHAKSND 451
Cdd:PRK07133 398 tknlEEGFETKDNKNKNSSFINKTEnILTNSPLKDELLEKTTEIIN-------IENPQEFEFG-------QIGNDIISTE 463
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 452 KKSLVSlllNSEPVAASEDHVLVKFDEEIHCEIVNKDDEKRNniESVVCNIVNKTVKVVGVPADQWLRVRAEYLQNRNTN 531
Cdd:PRK07133 464 IAQLDE---NQNLIDTGEFDLENNFSNSFNPENGNKIDENIN--ETFDTSTISANLSENKTNFAQSFNNKDTNLINSEIP 538
|
570 580 590
....*....|....*....|....*....|.
gi 1081111669 532 ETHQSEKQSTQQSQQIDIAQKAKDLFGEETV 562
Cdd:PRK07133 539 IDLIKDTITINNSQKNVKKNGNKDYLSVEEV 569
|
|
| PRK14965 |
PRK14965 |
DNA polymerase III subunits gamma and tau; Provisional |
1-264 |
1.81e-123 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237871 [Multi-domain] Cd Length: 576 Bit Score: 375.23 E-value: 1.81e-123
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 1 MDYQALYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSDDGEPCNECAICK 80
Cdd:PRK14965 1 MSYLVLARKYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 81 GITQGTNNDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPH 160
Cdd:PRK14965 81 EITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 161 KIPPTIISRAQRFDFKAISSDQIIDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMDQAIAFGDERLTLQDALNV 240
Cdd:PRK14965 161 KVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTLDQVLAFCGDAVGDDDVAEL 240
|
250 260
....*....|....*....|....
gi 1081111669 241 TGSVDEAALNELFNDIVKSDVKAA 264
Cdd:PRK14965 241 LGVVDRRLLLDISAAVFGRDTRAL 264
|
|
| PRK14953 |
PRK14953 |
DNA polymerase III subunits gamma and tau; Provisional |
1-453 |
1.08e-121 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237867 [Multi-domain] Cd Length: 486 Bit Score: 367.61 E-value: 1.08e-121
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 1 MDYQALYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSDDGEPCNECAICK 80
Cdd:PRK14953 1 MMYIPFARKYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 81 GITQGTNNDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPH 160
Cdd:PRK14953 81 EIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 161 KIPPTIISRAQRFDFKAISSDQIIDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMDQAIAFGDERLTLQDALNV 240
Cdd:PRK14953 161 KIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRDAASLLDQASTYGEGKVTIKVVEEF 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 241 TGSVDEAALNELFNDIVKSDVKAAFNRYHHFISEGKEVNRLINDMIYFVRDTIMNKTSNESVHFESLIHF------DLDM 314
Cdd:PRK14953 241 LGIVSQESVRKFLNLLLESDVDEAIKFLRTLEEKGYNLNKFWKQLEEEIRNILLNKSLKNPEEVFQVEDFyrklekPLEA 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 315 LYRMIDIINDTLVSIR-FSVNQSVHFEVLLVKLAEMIKTQPQTVQNVATASVANEPDNEmllqRLEQLENELKTLKEQGI 393
Cdd:PRK14953 321 LLYLEDVINKAFSEARtRDPLRAYELAILKLLYVKDIVPISELLKEGSKQETKEQPEKK----EEEKEELDIDKIILQII 396
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1081111669 394 KTNK--VSQQPKKPTRTIQRSKNTFsmqQIAKVLDKANKDDIKLLK----NHWQEVIDHAKSNDKK 453
Cdd:PRK14953 397 KNEGkiISAILKNAEIKEEEGKITI---KVEKSEEDTLDLEIKSIKkyfpFIEFEEVKKEKEKEKE 459
|
|
| PRK06305 |
PRK06305 |
DNA polymerase III subunits gamma and tau; Validated |
3-410 |
2.44e-115 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 180523 [Multi-domain] Cd Length: 451 Bit Score: 349.84 E-value: 2.44e-115
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 3 YQALYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCLN-SDDGEPCNECAICKG 81
Cdd:PRK06305 4 YQVSSRKYRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNpTEDQEPCNQCASCKE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 82 ITQGTNNDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHK 161
Cdd:PRK06305 84 ISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHK 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 162 IPPTIISRAQRFDFKAISSDQIIDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMDQAIAFGDERLTLQDALNVT 241
Cdd:PRK06305 164 IPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDAESLYDYVVGLFPKSLDPDSVAKAL 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 242 GSVDEAALNELFNDIVKSDVKAAFNRYHHFISEGKEVNRLINDMIYFVRDTIMNKTSneSVHFESLIHFDLDMLYRMIDI 321
Cdd:PRK06305 244 GLLSQDSLYTLDEAITTQNYAQALEPVTDAMNSGVAPAHFLHDLTLFFRNILLKQYN--KQLSSVATKYSSEQLLEIIDF 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 322 INDTLVSIRFSVNQSVHFEVLLVKLaemIKTqpqtvqnvatasvANEPDNEMLLQRLEQLENELKTLKEQGIKTNKVSQQ 401
Cdd:PRK06305 322 LGESAKHIQLTIFEKTFLETVIIHL---IRI-------------YQRPTLSQLVSQIKSPAFTQLRLESCPPQIKSSNSQ 385
|
....*....
gi 1081111669 402 PKKPTRTIQ 410
Cdd:PRK06305 386 QTVSSPQPQ 394
|
|
| PRK14948 |
PRK14948 |
DNA polymerase III subunit gamma/tau; |
1-544 |
4.93e-115 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237862 [Multi-domain] Cd Length: 620 Bit Score: 354.65 E-value: 4.93e-115
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 1 MDYQALYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSDD--GEPCNECAI 78
Cdd:PRK14948 1 MAYEPLHHKYRPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKptPEPCGKCEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 79 CKGITQGTNNDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTE 158
Cdd:PRK14948 81 CRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 159 PHKIPPTIISRAQRFDFKAISSDQIIDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMDQaIAFGDERLTLQDAL 238
Cdd:PRK14948 161 PQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLRDAESLLDQ-LSLLPGPITPEAVW 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 239 NVTGSVDEAALNELFNDIVKSDVKAAFNRYHHFISEGKEVNRLINDMIYFVRDTIMNKTSNE-----SV---HFESLIHF 310
Cdd:PRK14948 240 DLLGAVPEQDLLNLLKALASNDPESLLDSCRQLLDRGREPLAILQGLAAFYRDLLLAKTAPNrpdlvAVsqqTWDELCKL 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 311 ----DLDMLYRMIDIINDTLVSIRFSVNQSVHFEVLLVKLAemiktqPQTVQNVATASVANEPDNEMLLQRLEQLENELK 386
Cdd:PRK14948 320 akqiNLERILQWQQHLKGSEYQLKNSTQPRLWLEVTLLGLL------PSAFISEIANASAPANPTPAPNPSPPPAPIQPS 393
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 387 TLKEQGIKTNKVSQQPKKPTRTIQRSKNTFSMQQIAKVLDKANkdDIKLLKNHWQEVidhaksndkksLVSLLLNSEPVA 466
Cdd:PRK14948 394 APKTKQAATTPSPPPAKASPPIPVPAEPTEPSPTPPANAANAP--PSLNLEELWQQI-----------LAKLELPSTRML 460
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 467 ASEDHVLVKFDEEihcEIV--------NKDDEKRNNIESVVCNIVNKTVKVVgvpadqwlrvraeyLQNRNTNETHQSEK 538
Cdd:PRK14948 461 LSQQAELVSLDSN---RAViavspnwlGMVQSRKPLLEQAFAKVLGRSIKLN--------------LESQSGSASNTAKT 523
|
....*.
gi 1081111669 539 QSTQQS 544
Cdd:PRK14948 524 PPPPQK 529
|
|
| PRK14962 |
PRK14962 |
DNA polymerase III subunits gamma and tau; Provisional |
4-392 |
1.54e-112 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237869 [Multi-domain] Cd Length: 472 Bit Score: 343.67 E-value: 1.54e-112
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 4 QALYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSDDGEPCNECAICKGIT 83
Cdd:PRK14962 2 EALYRKYRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSID 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 84 QGTNNDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIP 163
Cdd:PRK14962 82 EGTFMDVIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVP 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 164 PTIISRAQRFDFKAISSDQIIDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMDQAIAFGDERLTLQDALNVTGS 243
Cdd:PRK14962 162 PTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSEGKITLETVHEALGL 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 244 VDEAALNELFNDIVKSDVKAAFNRYHHFISEGKEVNRLINDMIYFVRDTIMNKTSNESVHFESlihfDLDMLYRMIDIIN 323
Cdd:PRK14962 242 IPIEVVRDYINAIFNGDVKRVFTVLDDVYYSGKDYEVLIQQAIEDLVEDLERERANDIIQVSR----QLLNILREIKFAE 317
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1081111669 324 DTLVSIRF-SVNQSVHF---EVLLVKLAEMIKTQPQTVQNVATASVANEPDNEMLLQRLEQLENELKTLKEQG 392
Cdd:PRK14962 318 EKRLVCKLgSASIATRFsspNVQENDVEEKNDNSNVQQKEKKKEESKAKEEKQEDIEFEKRFKELMEELKEKG 390
|
|
| PRK14971 |
PRK14971 |
DNA polymerase III subunit gamma/tau; |
8-424 |
7.36e-111 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 343.68 E-value: 7.36e-111
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 8 RMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCLN-SDDGEPCNECAICKGITQGT 86
Cdd:PRK14971 9 RKYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNlTADGEACNECESCVAFNEQR 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 87 NNDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTI 166
Cdd:PRK14971 89 SYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTI 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 167 ISRAQRFDFKAISSDQIIDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMDQAIAFGDERLTLQ---DALNV--- 240
Cdd:PRK14971 169 LSRCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRDALSIFDQVVSFTGGNITYKsviENLNIldy 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 241 -----------TGSVDEAALneLFNDIVKSdvkaAFNRyHHFisegkevnrlINDMIYFVRDTIMNKTS--------NES 301
Cdd:PRK14971 249 dyyfrltdallAGKVSDSLL--LFDEILNK----GFDG-SHF----------ITGLASHFRDLLVCKDAatlqllevGES 311
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 302 V---HFESLIHFDLDMLYRMIDIINDTLVSIRFSVNQSVHFEVLLVKLAEMiktqPQTVQNVATASVANEPDNEMLLQRL 378
Cdd:PRK14971 312 IrqrYLEQAQKCPMSFLYRALKLCNQCDLNYRASKNKRLLVELTLIQLAQL----TQKGDDASGGRGPKQHIKPVFTQPA 387
|
410 420 430 440
....*....|....*....|....*....|....*....|....*...
gi 1081111669 379 EQLENELKTLKEQGIKTNKVSQQPKKPT--RTIQRSKNTFSMQQIAKV 424
Cdd:PRK14971 388 AAPQPSAAAAASPSPSQSSAAAQPSAPQsaTQPAGTPPTVSVDPPAAV 435
|
|
| PRK06647 |
PRK06647 |
DNA polymerase III subunits gamma and tau; Validated |
1-451 |
8.18e-108 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235845 [Multi-domain] Cd Length: 563 Bit Score: 334.43 E-value: 8.18e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 1 MDYQALYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSDDGEPCNECAICK 80
Cdd:PRK06647 1 MSYRGTATKRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 81 GITQGTNNDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPH 160
Cdd:PRK06647 81 SIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 161 KIPPTIISRAQRFDFKAISSDQIIDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMDQAIAFGDERLTLQDALNV 240
Cdd:PRK06647 161 KLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDAYTLFDQVVSFSDSDITLEQIRSK 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 241 TGSVDEAALNELFNDIVKSDVKAAFNRYHHFISEGKEVNRLINDMIYFVRDTIMNK--TSNESV------HF-ESLIHFD 311
Cdd:PRK06647 241 MGLTGDEFLEKLASSILNEDAKELLCVLDSVFLSGVSVEQFLLDCIEFFRELLFLKhgIKNEAFigikaeRLpEKLREFD 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 312 LDMLYRMIDIINDTLVSIRFSVNQSVHFEVLLVKLAEM--------IKTQPQTVQNVATASVANEPDNEMLLQRLEQLEN 383
Cdd:PRK06647 321 LSQIERAISVLLETYRDLQFSVNPRYELEINFSKILRLkdyvpnheLIKQIQDLESKLLEHAAPDSCNFDVGSDNESTDD 400
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1081111669 384 ELKTLKEQGIKT---NKVSQQPKKPTRTIQRSKNTFSMQQIAKVLDKANKDDIkllknhWQEVIDHA-KSND 451
Cdd:PRK06647 401 LSPIPIDPPLKAelpEIRSLEPDESTKEDEPLKTKIDSDMLSTESWDDEIDEI------FIEVRDNFdRSND 466
|
|
| PRK05896 |
PRK05896 |
DNA polymerase III subunits gamma and tau; Validated |
1-533 |
3.41e-107 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235638 [Multi-domain] Cd Length: 605 Bit Score: 334.12 E-value: 3.41e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 1 MDYQALYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSDDGEPCNECAICK 80
Cdd:PRK05896 1 MSEITFYRKYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 81 GITQGTNNDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPH 160
Cdd:PRK05896 81 SINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 161 KIPPTIISRAQRFDFKAISSDQIIDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMDQAIAFGDERLTLQDALNV 240
Cdd:PRK05896 161 KIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQLSTFKNSEIDIEDINKT 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 241 TGSVDEAALNELFNDIVKSDVKAAFNRYHHFISEGKEVNRLINDMIYFVRD----------TIMNKTSNESVHFESLIHF 310
Cdd:PRK05896 241 FGLVDNNKKINLIELIQKNDIEELRNLINELESKGINFEAFCRDLINLLIDllvyqktkniNLLKKLSKEQLKTLNLEKQ 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 311 DLDMLYRMIDIINDTLVS----IRFSVNQSVHFEVLLVKLAE-----------MIKTQPQTVQNVATASVANEPDNEM-- 373
Cdd:PRK05896 321 KLLSIEFNTNFLLNNFVSlinrLKASVNQVFEFEIYLYKIINanpdklenkkiEISIKPEKKTINNSQIITTKKINIVee 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 374 LLQRLEQLENELKTLKEQGIKTNKVSQQPKK-------PTRTIQRSKNTFSMQQIAKVLD----KANKDDIKLLKNHWQE 442
Cdd:PRK05896 401 SNKNSVHFDTLYKTKIFYHKKKINQNNKEQDikkeellEKEFVKKSEKIPKNDELLDNLElakqKFFNKDIELSKNMLQK 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 443 VIDHAKSNDKK-SLVSLLLNSEPVAASEDHVLVKF-DEEIHCEIVNKDDEKRNNIESVVcNIVNKTVKVVGVPADQWLRV 520
Cdd:PRK05896 481 FNKFKNEESAEnSFIDIIKQADLVLWVSPNALILGvEDLGLIELINKVNESFEFIKTIF-KKFNKNKLVIAISKKQATKI 559
|
570
....*....|....*.
gi 1081111669 521 ---RAEYLQNRNTNET 533
Cdd:PRK05896 560 tniKNQKLKTNIINDV 575
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
1-245 |
4.80e-105 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 329.52 E-value: 4.80e-105
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 1 MDYQALYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINClnsDDG---EPCNECA 77
Cdd:PRK07994 1 MSYQVLARKWRPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNC---ETGitaTPCGECD 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 78 ICKGITQGTNNDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATT 157
Cdd:PRK07994 78 NCREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATT 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 158 EPHKIPPTIISRAQRFDFKAISSDQIIDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMDQAIAFGDERLTLQDA 237
Cdd:PRK07994 158 DPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDALSLTDQAIASGNGQVTTDDV 237
|
....*...
gi 1081111669 238 LNVTGSVD 245
Cdd:PRK07994 238 SAMLGTLD 245
|
|
| PRK09111 |
PRK09111 |
DNA polymerase III subunits gamma and tau; Validated |
3-265 |
8.63e-102 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236382 [Multi-domain] Cd Length: 598 Bit Score: 319.54 E-value: 8.63e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 3 YQALYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSD-DGEP----CNECA 77
Cdd:PRK09111 11 YRVLARKYRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDgDGGPtidlCGVGE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 78 ICKGITQGTNNDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATT 157
Cdd:PRK09111 91 HCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATT 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 158 EPHKIPPTIISRAQRFDFKAISSDQIIDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMDQAIAFGDERLTLQDA 237
Cdd:PRK09111 171 EIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVRDGLSLLDQAIAHGAGEVTAEAV 250
|
250 260
....*....|....*....|....*...
gi 1081111669 238 LNVTGSVDEAALNELFNDIVKSDVKAAF 265
Cdd:PRK09111 251 RDMLGLADRARVIDLFEALMRGDVAAAL 278
|
|
| PRK08691 |
PRK08691 |
DNA polymerase III subunits gamma and tau; Validated |
1-263 |
1.24e-101 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236333 [Multi-domain] Cd Length: 709 Bit Score: 322.81 E-value: 1.24e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 1 MDYQALYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSDDGEPCNECAICK 80
Cdd:PRK08691 1 MAYQVLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 81 GITQGTNNDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPH 160
Cdd:PRK08691 81 QIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 161 KIPPTIISRAQRFDFKAISSDQIIDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMDQAIAFGDERLTLQDALNV 240
Cdd:PRK08691 161 KVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIALGSGKVAENDVRQM 240
|
250 260
....*....|....*....|...
gi 1081111669 241 TGSVDEAALNELFNDIVKSDVKA 263
Cdd:PRK08691 241 IGAVDKQYLYELLTGIINQDGAA 263
|
|
| PRK14969 |
PRK14969 |
DNA polymerase III subunits gamma and tau; Provisional |
1-266 |
3.50e-100 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237873 [Multi-domain] Cd Length: 527 Bit Score: 313.22 E-value: 3.50e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 1 MDYQALYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSDDGEPCNECAICK 80
Cdd:PRK14969 1 MSYQVLARKWRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 81 GITQGTNNDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPH 160
Cdd:PRK14969 81 EIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 161 KIPPTIISRAQRFDFKAISSDQIIDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMDQAIAFGDERLTLQDALNV 240
Cdd:PRK14969 161 KIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDALSLLDQAIAYGGGTVNESEVRAM 240
|
250 260
....*....|....*....|....*.
gi 1081111669 241 TGSVDEAALNELFNDIVKSDVKAAFN 266
Cdd:PRK14969 241 LGAIDQDYLFALLEALLAQDGAALLA 266
|
|
| PRK14954 |
PRK14954 |
DNA polymerase III subunits gamma and tau; Provisional |
1-413 |
1.27e-99 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184918 [Multi-domain] Cd Length: 620 Bit Score: 314.96 E-value: 1.27e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 1 MDYQALYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSDDG--------EP 72
Cdd:PRK14954 1 MSYQVIARKYRPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDpvylqevtEP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 73 CNECAICKGITQGTNNDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIF 152
Cdd:PRK14954 81 CGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIF 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 153 ILATTEPHKIPPTIISRAQRFDFKAISSDQIIDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMDQAIAF----- 227
Cdd:PRK14954 161 IFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMRDAQSILDQVIAFsvgse 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 228 GDERLTLQDALNVTGSVDEAALNELFNDIVKSDVKAAFNRYHHFISEGKEVNRLINDMIYFVRDTIM--NKTSN------ 299
Cdd:PRK14954 241 AEKVIAYQGVAELLNYIDDEQFFDVTDAIAENDAVKMLEVARFVIDNGYDEQDFLEKLIEHFRNFLVlyNLRSTrlierp 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 300 ESV---HFESLIHFDLDMLYRMIDIINDTLVSIRFSVNQSVHFEVLLVKLAEMIKTQPQTvqnvaTASVANEPDnemllq 376
Cdd:PRK14954 321 ESVkerYQQSAGGLTPAAVMQMTDFLMKTQGELKFQFEYQFRFELALLRLIELVRNDGGV-----APSPAGSPD------ 389
|
410 420 430
....*....|....*....|....*....|....*..
gi 1081111669 377 rleqlenELKTLKEQGIKTNKVSQQPKKPTRTIQRSK 413
Cdd:PRK14954 390 -------VKKKAPEPDLPQPDRHPGPAKPEAPGARPA 419
|
|
| PRK08451 |
PRK08451 |
DNA polymerase III subunits gamma and tau; Validated |
4-427 |
6.50e-96 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236267 [Multi-domain] Cd Length: 535 Bit Score: 302.72 E-value: 6.50e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 4 QALYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSDDGEPCNECAICKGIT 83
Cdd:PRK08451 2 QALALKYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSAL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 84 QGTNNDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIP 163
Cdd:PRK08451 82 ENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLP 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 164 PTIISRAQRFDFKAISSDQIIDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMDQAIAFGDERLTLQDALNVTGS 243
Cdd:PRK08451 162 ATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGSLRDTLTLLDQAIIYCKNAITESKVADMLGL 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 244 VDEAALNELFNDIVKSDVKAAFNRYHhfISEGKEVNRLINDMIYFVRDTIMNKTSNesvhfeslihFDLDMLYRMIDIIN 323
Cdd:PRK08451 242 LDPSKLEDFFQAILNQDKEKLFELLK--ELEDYEAEMVLDEMMLFLKEKFLSKDSE----------FSILLYERFFRILS 309
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 324 DTLVSIRFSVNQSVHFEVLLVKLAEMIKtqpqtvqnvatasvanepdnemlLQRLEQLENELKTLKEQGIK----TNKVS 399
Cdd:PRK08451 310 SAKSLLKEGADDGFVLLLMLFKMKEALK-----------------------LKEIDDAIEELEQEKTTAIIplntPAPII 366
|
410 420
....*....|....*....|....*...
gi 1081111669 400 QQPKKPTRTIQRSKNTFSMQQiAKVLDK 427
Cdd:PRK08451 367 PNTEKEEAKDRIFKNLFEQLL-DKIYDR 393
|
|
| PRK14955 |
PRK14955 |
DNA polymerase III subunits gamma and tau; Provisional |
1-354 |
1.09e-95 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184919 [Multi-domain] Cd Length: 397 Bit Score: 297.57 E-value: 1.09e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 1 MDYQALYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCLN-SDDG-------EP 72
Cdd:PRK14955 1 MSYQVIARKYRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRmIDDAdylqevtEP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 73 CNECAICKGITQGTNNDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIF 152
Cdd:PRK14955 81 CGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIF 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 153 ILATTEPHKIPPTIISRAQRFDFKAISSDQIIDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMDQAIAF----- 227
Cdd:PRK14955 161 IFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQSILDQVIAFsvese 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 228 GDERLTLQDALNVTGSVDEAALNELFNDIVKSDVKAAFNRYHHFISEGKEVNRLINDMIYFVRDTIM--NKTSNESVHFE 305
Cdd:PRK14955 241 GEGSIRYDKVAELLNYIDDEHFFAVTDAVADGDAVAMLDVAQFVIRNGYDEQDFLEKLIEHLRNFLVvhNLRSTRLVERP 320
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 1081111669 306 SLI---------HFDLDMLYRMIDIINDTLVSIRFSVNQSVHFEVLLVKLAEMIKTQP 354
Cdd:PRK14955 321 DAVreryerdaaKFSPEVIMQMTDLLLQTQKELKFQFEYQFRFELALLKLIEIGHPAP 378
|
|
| PRK14956 |
PRK14956 |
DNA polymerase III subunits gamma and tau; Provisional |
3-438 |
1.96e-95 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184920 [Multi-domain] Cd Length: 484 Bit Score: 299.94 E-value: 1.96e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 3 YQALYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSDDGEPCNECAICKGI 82
Cdd:PRK14956 5 HEVLSRKYRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEI 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 83 TQGTNNDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKI 162
Cdd:PRK14956 85 TKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKI 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 163 PPTIISRAQRFDFKAISSDQIIDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMDQAIAFGDERLTLQDALNVTG 242
Cdd:PRK14956 165 PETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAIVFTDSKLTGVKIRKMIG 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 243 SVDEAALNELFNDIVKSDVKA-AFNRYHHFISEGKEVNRLINDMIYF------VRDTIMNKtsnESVHF----------- 304
Cdd:PRK14956 245 YHGIEFLTSFIKSLIDPDNHSkSLEILESLYQEGQDIYKFLWDSIEFthtlnlIRDSLADR---ESVNFpkedlqkmksd 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 305 -----ESLIHFDLDMLYRMIDIINdtLVSIRFSVNQSVHFEVLLVKLAEMIkTQPqtvqnvataSVANepdnemLLQRLE 379
Cdd:PRK14956 322 fenvdSSKLNFLSGKLFEIYEKIK--TIRLRNSFEIKVFTEIQIKKLVEEL-TYP---------SLAG------LLDKIN 383
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1081111669 380 QLENELKTLKEQGIKTNKVSQQPKKPTRTIQRSK---NTFSMQQIAKVLDkANKDDIKLLKN 438
Cdd:PRK14956 384 HLILMVQGSKNIPEDVEPVKKISTPPPLQQEASKkkdPTTSDQKLNSQFE-SNQQDSNLDNN 444
|
|
| PRK14952 |
PRK14952 |
DNA polymerase III subunits gamma/tau; |
4-474 |
1.43e-94 |
|
DNA polymerase III subunits gamma/tau;
Pssm-ID: 237866 [Multi-domain] Cd Length: 584 Bit Score: 300.64 E-value: 1.43e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 4 QALYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSDDGEPCNECAICKGIT 83
Cdd:PRK14952 1 MALYRKYRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 84 QGTNN--DVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHK 161
Cdd:PRK14952 81 PNGPGsiDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 162 IPPTIISRAQRFDFKAISSDQIIDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMDQAIA-FGDERLTLQDALNV 240
Cdd:PRK14952 161 VLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAgAADTHVTYQRALGL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 241 TGSVDEAALNELFNDIVKSDVKAAFNRYHHFISEGKEVNRLINDMIYFVRDTIMNKTSNESVHfESLIHFDLDMLYRMID 320
Cdd:PRK14952 241 LGATDVALIDDAVDALAADDAAALFGAIESVIDAGHDPRRFATDLLERFRDLIVLQAVPDAAA-RGVVDAPEDVLERMRE 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 321 IindtlvSIRFSVNQSVHF-EVLLVKLAEMI-KTQPQTVQNVATAS--VANEPDNE-MLLQRLEQLENELktlkEQGIKT 395
Cdd:PRK14952 320 Q------AARIGLATLTRYaEVVQAGLGEMRgATAPRLLLEVVCARllLPSASDAEsALLQRVERIETRL----DMSIPA 389
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 396 NKVSQQPK-----KPTRTIQRSKNTFSMQQIAKVLDKANKDDIKLLKNHWQEVIDHAKSNDKKSLVslLLNSEPVAASED 470
Cdd:PRK14952 390 NLLHNAPQaapapSAAAPEPKHQPAPEPRPVLAPTPASGEPNAAAVRSMWSTVRDKVRQRSRTTEV--MLAGATVRALEG 467
|
....
gi 1081111669 471 HVLV 474
Cdd:PRK14952 468 NTLV 471
|
|
| PRK14963 |
PRK14963 |
DNA polymerase III subunits gamma and tau; Provisional |
5-265 |
2.26e-91 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184927 [Multi-domain] Cd Length: 504 Bit Score: 289.82 E-value: 2.26e-91
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 5 ALYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSDDgEPCNECAICKGITQ 84
Cdd:PRK14963 3 ALYQRARPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDP-KPCGECESCLAVRR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 85 GTNNDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPP 164
Cdd:PRK14963 82 GAHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPP 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 165 TIISRAQRFDFKAISSDQIIDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMDQAIAFGDErLTLQDALNVTGSV 244
Cdd:PRK14963 162 TILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDAESLLERLLALGTP-VTRKQVEEALGLP 240
|
250 260
....*....|....*....|.
gi 1081111669 245 DEAALNELFNDIVKSDVKAAF 265
Cdd:PRK14963 241 PQERLRGIAAALAQGDAAEAL 261
|
|
| PRK14949 |
PRK14949 |
DNA polymerase III subunits gamma and tau; Provisional |
1-261 |
8.49e-91 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237863 [Multi-domain] Cd Length: 944 Bit Score: 299.33 E-value: 8.49e-91
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 1 MDYQALYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSDDGEPCNECAICK 80
Cdd:PRK14949 1 MSYQVLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 81 GITQGTNNDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPH 160
Cdd:PRK14949 81 EIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 161 KIPPTIISRAQRFDFKAISSDQIIDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMDQAIAFGDERLTLQDALNV 240
Cdd:PRK14949 161 KLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDALSLTDQAIAFGGGQVMLTQVQTM 240
|
250 260
....*....|....*....|.
gi 1081111669 241 TGSVDEAALNELFNDIVKSDV 261
Cdd:PRK14949 241 LGSIDEQHVIALLKALTDADI 261
|
|
| PRK14959 |
PRK14959 |
DNA polymerase III subunits gamma and tau; Provisional |
1-301 |
5.70e-90 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184923 [Multi-domain] Cd Length: 624 Bit Score: 289.66 E-value: 5.70e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 1 MDYQALYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSDDGEPCNECAICK 80
Cdd:PRK14959 1 MSHASLTARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 81 GITQGTNNDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPH 160
Cdd:PRK14959 81 KVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 161 KIPPTIISRAQRFDFKAISSDQIIDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMDQAIAFGDERLTLQDALNV 240
Cdd:PRK14959 161 KFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVLALGESRLTIDGARGV 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1081111669 241 TGSVDEAALNELFNDIVKSDVKAAFNRYHHFISEGKEVNRLINDMIYFVRDTIMNKTSNES 301
Cdd:PRK14959 241 LGLAGQELFLRLMEALAAQDCLGVANVVRELLDRGVDMGFFLRELVATWRNLFMLRQAGEA 301
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
1-260 |
7.95e-90 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 291.39 E-value: 7.95e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 1 MDYQALYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSDD-----GEPCNE 75
Cdd:PRK12323 1 MSYQVLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGeggitAQPCGQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 76 CAICKGITQGTNNDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILA 155
Cdd:PRK12323 81 CRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 156 TTEPHKIPPTIISRAQRFDFKAISSDQIIDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMDQAIAFGDERLTLQ 235
Cdd:PRK12323 161 TTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSLTDQAIAYSAGNVSEE 240
|
250 260
....*....|....*....|....*
gi 1081111669 236 DALNVTGSVDEAALNELFNDIVKSD 260
Cdd:PRK12323 241 AVRGMLGAIDQSYLVRLLDALAAED 265
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
1-245 |
5.84e-89 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 287.00 E-value: 5.84e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 1 MDYQALYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSD-----DGEPCNE 75
Cdd:PRK14951 1 MSYLVLARKYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDgqggiTATPCGV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 76 CAICKGITQGTNNDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILA 155
Cdd:PRK14951 81 CQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 156 TTEPHKIPPTIISRAQRFDFKAISSDQIIDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMDQAIAFGDERLTLQ 235
Cdd:PRK14951 161 TTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDALSLTDQAIAFGSGQLQEA 240
|
250
....*....|
gi 1081111669 236 DALNVTGSVD 245
Cdd:PRK14951 241 AVRQMLGSVD 250
|
|
| PRK14964 |
PRK14964 |
DNA polymerase III subunits gamma and tau; Provisional |
10-512 |
5.99e-89 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237870 [Multi-domain] Cd Length: 491 Bit Score: 283.21 E-value: 5.99e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 10 YRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSDDGEPCNECAICKGITQGTNND 89
Cdd:PRK14964 7 YRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPD 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 90 VIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISR 169
Cdd:PRK14964 87 VIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISR 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 170 AQRFDFKAISSDQIIDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMDQAIAFGDERLTLQDALNVTGSVDEAAL 249
Cdd:PRK14964 167 CQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNALFLLEQAAIYSNNKISEKSVRDLLGCVDKHIL 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 250 NELFNDIVKSDVKAAFNRYHHFISEGKEVNRLIN--DMIYFVRDTIMNKTsnesvhfeslIHFDLDmlyrmidiiNDTLV 327
Cdd:PRK14964 247 EDLVEAILLGDAQSALNVFRELCNTSNPVIILEGmlQIIYEICYFSITKE----------IDFLLG---------EDLIT 307
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 328 SIRFSVNQSVHFevlLVKLAEMIKTQPQTVQNVATASVAnepdNEMLLQRL-------------EQLENELKTLKEQGIK 394
Cdd:PRK14964 308 RIKSLKIGSTIF---LSRLWQMLLKGIQEVKSSTCVKQA----AEMMIIRLcylsdlpspqqiiKKILSKSVEQAPRQIK 380
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 395 TNKVSQQ--PKKPTRTIQRSKNTFSMQQIAKVLDKANKDDIKLLKNHWQEVIDHAKSNDKKSLVSLLLNSEPVAASedhv 472
Cdd:PRK14964 381 VNNKQQNydFDKLLQLLKSNNMIDLYNQLCSSLQEIDCKSDYTLNIKANSQLDSNFCNDLKNFLNQLTNKKWNICI---- 456
|
490 500 510 520
....*....|....*....|....*....|....*....|..
gi 1081111669 473 lvkfdEEIHCEIVNKDDekrnniESVVCNIVN--KTVKVVGV 512
Cdd:PRK14964 457 -----DKNSNLVYNPEL------DEAVKDILQefDGAKVVNI 487
|
|
| PRK14970 |
PRK14970 |
DNA polymerase III subunits gamma and tau; Provisional |
8-364 |
1.36e-88 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184934 [Multi-domain] Cd Length: 367 Bit Score: 277.91 E-value: 1.36e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 8 RMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSDDGEpcnecaickgitQGTN 87
Cdd:PRK14970 9 RKYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPN------------EDFS 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 88 NDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTII 167
Cdd:PRK14970 77 FNIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTIL 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 168 SRAQRFDFKAISSDQIIDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMDQAIAFGDERLTLQDALNVTGSVDEA 247
Cdd:PRK14970 157 SRCQIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALRDALSIFDRVVTFCGKNITRQAVTENLNILDYD 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 248 ALNELFNDIVKSDVKAAFNRYHHFISEGKEVNRLINDMIYFVRDTIMNKT-----------SNESVHFESLIHFDLDMLY 316
Cdd:PRK14970 237 TYINVTDLILENKIPELLLAFNEILRKGFDGHHFIAGLASHFRDLMVSKTpatiallevgeQAKKRYEVQSQKVSQSFLL 316
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 1081111669 317 RMIDIINDTLVSIRFSVNQSVHFEVLLVKLAEMI---KTQPQTVQNVATAS 364
Cdd:PRK14970 317 SGIDIANDCDLKYKLSKNQRLLVELALMQLASINfdgISAKKKLSDLKKKV 367
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
5-382 |
5.76e-88 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 289.19 E-value: 5.76e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 5 ALYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSDDGEPCNECAICKGI-T 83
Cdd:PRK07764 4 ALYRRYRPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALaP 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 84 QGTNN-DVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKI 162
Cdd:PRK07764 84 GGPGSlDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKV 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 163 PPTIISRAQRFDFKAISSDQIIDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMDQAIA-FGDERLTLQDALNVT 241
Cdd:PRK07764 164 IGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSVRDSLSVLDQLLAgAGPEGVTYERAVALL 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 242 GSVDEAALNELFNDIVKSDVKAAFNRYHHFISEGKEVNRLINDMIYFVRD-TIMNKTSNEsvhFES-LI----------- 308
Cdd:PRK07764 244 GVTDSALIDEAVDALAAGDGAALFGTVDRVIEAGHDPRRFAEDLLERLRDlIVLQAVPDA---AERgLVdapadqldrmr 320
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1081111669 309 ----HFDLDMLYRMIDIINDTLVSIRFSVNQSVHFEVLLVKLAemiktqpqtvqnVATASvanePDNEMLLQRLEQLE 382
Cdd:PRK07764 321 aqaqRLGPAELTRAADVVNDGLTEMRGATSPRLLLELLCARML------------LPSAS----DDERGLLARLERLE 382
|
|
| PRK14961 |
PRK14961 |
DNA polymerase III subunits gamma and tau; Provisional |
1-296 |
3.01e-87 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184925 [Multi-domain] Cd Length: 363 Bit Score: 274.38 E-value: 3.01e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 1 MDYQALYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSDDGEPCNECAICK 80
Cdd:PRK14961 1 MNYQILARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 81 GITQGTNNDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPH 160
Cdd:PRK14961 81 EIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 161 KIPPTIISRAQRFDFKAISSDQIIDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMDQAIAFGDERLTLQDALNV 240
Cdd:PRK14961 161 KIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDALNLLEHAINLGKGNINIKNVTDM 240
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 1081111669 241 TGSVDEAALNELFNDIVKSDVKAAFNRYHHFISEGKEVNRLINDMIYFVRDTIMNK 296
Cdd:PRK14961 241 LGLLNEKQSFLLTDALLKKDSKKTMLLLNKISSIGIEWENILIEMLRFLHHISMSQ 296
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
1-260 |
2.96e-82 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 274.03 E-value: 2.96e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 1 MDYQALYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSDDGEPCNECAICK 80
Cdd:PRK07003 1 MTYQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 81 GITQGTNNDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPH 160
Cdd:PRK07003 81 EIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 161 KIPPTIISRAQRFDFKAISSDQIIDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMDQAIAFGDERLTLQDALNV 240
Cdd:PRK07003 161 KIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTETAVSGM 240
|
250 260
....*....|....*....|
gi 1081111669 241 TGSVDEAALNELFNDIVKSD 260
Cdd:PRK07003 241 LGALDQTYMVRLLDALAAGD 260
|
|
| PRK14960 |
PRK14960 |
DNA polymerase III subunit gamma/tau; |
3-252 |
1.01e-81 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237868 [Multi-domain] Cd Length: 702 Bit Score: 269.99 E-value: 1.01e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 3 YQALYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSDDGEPCNECAICKGI 82
Cdd:PRK14960 2 YQVLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 83 TQGTNNDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKI 162
Cdd:PRK14960 82 NEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKL 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 163 PPTIISRAQRFDFKAISSDQIIDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMDQAIAFGDERLTLQDALNVTG 242
Cdd:PRK14960 162 PITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQAIAYGQGAVHHQDVKEMLG 241
|
250
....*....|
gi 1081111669 243 SVDEAALNEL 252
Cdd:PRK14960 242 LIDRTIIYDL 251
|
|
| PRK14957 |
PRK14957 |
DNA polymerase III subunits gamma and tau; Provisional |
1-420 |
2.31e-78 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184921 [Multi-domain] Cd Length: 546 Bit Score: 256.93 E-value: 2.31e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 1 MDYQALYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSDDGEPCNECAICK 80
Cdd:PRK14957 1 MSYQALARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 81 GITQGTNNDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPH 160
Cdd:PRK14957 81 AINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 161 KIPPTIISRAQRFDFKAISSDQIIDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMDQAIAFGDERLTLQDALNV 240
Cdd:PRK14957 161 KIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLDQAISFCGGELKQAQIKQM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 241 TGSVDEAALNELFNDIVKSDVKAAFNRYHHFISEGKEVNRLINDM--IYFVRDTIMNKTSNESVHfeslihfDLDmlyrm 318
Cdd:PRK14957 241 LGIIDSEEVYSIINAIIDNDPKAILPAIKNLALTESSADAVLDRIaeIWFACCIYSFTQSLDAVN-------DID----- 308
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 319 IDIINDTLVSIrfSVNQSvHFevlLVKLAEMIKTQPQTVQNVATASVanepdneMLLQRLEQLENELKTLKEQGIKTNKV 398
Cdd:PRK14957 309 VDIINNILAKI--SIEQA-HF---LYQLTITAKKDIALAPNFETGVT-------MAILRLIAFQKKNLIDKTQTSKSNIS 375
|
410 420
....*....|....*....|..
gi 1081111669 399 SQQPKKptrTIQRSKNTFSMQQ 420
Cdd:PRK14957 376 PIVSKN---DINLLKNTFKSEQ 394
|
|
| PRK06645 |
PRK06645 |
DNA polymerase III subunits gamma and tau; Validated |
3-345 |
4.14e-72 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 180643 [Multi-domain] Cd Length: 507 Bit Score: 239.38 E-value: 4.14e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 3 YQALYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCL----NSDDGEPCNECAI 78
Cdd:PRK06645 8 YIPFARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSalitENTTIKTCEQCTN 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 79 CKGITQGTNNDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTE 158
Cdd:PRK06645 88 CISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTE 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 159 PHKIPPTIISRAQRFDFKAISSDQIIDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMDQAIAFG---DERLTLQ 235
Cdd:PRK06645 168 VQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSILDQAASMSaksDNIISPQ 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 236 DALNVTGSVDEAALNELFNDIVKSDVKAAFNRYHHFISEGKEVNRLIN---DMIYFVRDTIMNKTSNESVhFES------ 306
Cdd:PRK06645 248 VINQMLGLVDSSVIIEFVEYIIHRETEKAINLINKLYGSSVNLEIFIEsvsDFIAYLNKVKMLPNYSLPI-YESfndrtk 326
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 1081111669 307 --LIHFDLDMLYRMIDIINDTLVSIRFSVNQSVHFEVLLVK 345
Cdd:PRK06645 327 siLDKISLPHLSILWQIYNKGVGEIKISYNQLTETEMLVIK 367
|
|
| PRK14958 |
PRK14958 |
DNA polymerase III subunits gamma and tau; Provisional |
1-333 |
5.58e-70 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184922 [Multi-domain] Cd Length: 509 Bit Score: 233.85 E-value: 5.58e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 1 MDYQALYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSDDGEPCNECAICK 80
Cdd:PRK14958 1 MAHQVLARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 81 GITQGTNNDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPH 160
Cdd:PRK14958 81 EIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 161 KIPPTIISRAQRFDFKAISSDQIIDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMDQAIAFGDERLTLQDALNV 240
Cdd:PRK14958 161 KLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLLDQSIAYGNGKVLIADVKTM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 241 TGSVDEAALNELFNDIVKSDVKAAFNRYHHFISEGKEVNRLINDMIYFVRDTIMNKTSNesvhfESLIHFDLDMLYRMID 320
Cdd:PRK14958 241 LGTIEPLLLFDILEALAAKAGDRLLGCVTRLVEQGVDFSNALADLLSLLHQIAIIQTVP-----EALIENDSEQLRQLAK 315
|
330
....*....|...
gi 1081111669 321 IINDTLVSIRFSV 333
Cdd:PRK14958 316 LLDREDVQLFYQI 328
|
|
| HolB |
COG0470 |
DNA polymerase III, delta prime subunit [Replication, recombination and repair]; |
21-349 |
2.27e-64 |
|
DNA polymerase III, delta prime subunit [Replication, recombination and repair];
Pssm-ID: 440238 [Multi-domain] Cd Length: 289 Bit Score: 212.14 E-value: 2.27e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 21 QTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSDDGEPCNECAiCKGITQGTNNDVIEIDAASNN- 99
Cdd:COG0470 1 QEEAWEQLLAAAESGRLPHALLLHGPPGIGKTTLALALARDLLCENPEGGKACGQCH-SRLMAAGNHPDLLELNPEEKSd 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 100 --GVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKA 177
Cdd:COG0470 80 qiGIDQIRELGEFLSLTPLEGGRKVVIIDEADAMNEAAANALLKTLEEPPKNTPFILIANDPSRLLPTIRSRCQVIRFRP 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 178 ISSDQIIDRLkyvansQSLDYDDAALEFIAKASEGGMRDALSIMdQAIAfgdERLTLQDALNVTGSVDEAAlnELFNDIV 257
Cdd:COG0470 160 PSEEEALAWL------REEGVDEDALEAILRLAGGDPRAAINLL-QALA---GRKELLEDLAALLSRDRAL--ELLDALL 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 258 KSDVKAAFNryhhfisegkEVNRLINDMIYfvrdtimnktsnesvhfeslIHFDLDMLYRMIDIINDTLVSIRFSVNQSV 337
Cdd:COG0470 228 KAEALELLD----------WLLKWLLDNLP--------------------LEYAGEDLARAYEALSEADRRLGRYANDRL 277
|
330
....*....|..
gi 1081111669 338 HFEVLLVKLAEM 349
Cdd:COG0470 278 LLEALLAKLGRL 289
|
|
| holB |
TIGR00678 |
DNA polymerase III, delta' subunit; This model describes the N-terminal half of the delta' ... |
26-212 |
6.60e-56 |
|
DNA polymerase III, delta' subunit; This model describes the N-terminal half of the delta' subunit of DNA polymerase III. Delta' is homologous to the gamma and tau subunits, which form an outgroup for phylogenetic comparison. The gamma/tau branch of the tree is much more tighly conserved than the delta' branch, and some members of that branch score more highly against this model than some proteins classisified as delta'. The noise cutoff is set to detect weakly scoring delta' subunits rather than to exclude gamma/tau subunits. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273213 [Multi-domain] Cd Length: 188 Bit Score: 186.29 E-value: 6.60e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 26 KTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSDDGEPCNECAICKGITQGTNNDVIEIDAASNN-GVDEI 104
Cdd:TIGR00678 2 QQLKRALEKGRLAHAYLFTGPEGVGKELLALALAKALLCEQRGGGEPCGECHSCRLIEAGNHPDLHRLEPEGQSiKVDQV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 105 RNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISSDQII 184
Cdd:TIGR00678 82 RELVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQRLPFPPLSEEALL 161
|
170 180
....*....|....*....|....*...
gi 1081111669 185 DRLKYVANSQsldyddAALEFIAKASEG 212
Cdd:TIGR00678 162 QWLIRQGISE------EAAELLLALAGG 183
|
|
| DNA_pol3_delta2 |
pfam13177 |
DNA polymerase III, delta subunit; DNA polymerase III, delta subunit (EC 2.7.7.7) is required ... |
20-179 |
1.93e-55 |
|
DNA polymerase III, delta subunit; DNA polymerase III, delta subunit (EC 2.7.7.7) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalyzed reaction. The delta subunit is also known as HolA.
Pssm-ID: 433013 [Multi-domain] Cd Length: 161 Bit Score: 184.34 E-value: 1.93e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 20 GQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSDDGEPCNECAICKGITQGTNNDVIEIDAASNN 99
Cdd:pfam13177 1 GQPEAIQLLQNSLENGRLSHAYLFSGPEGVGKLELALAFAKALFCEEPGDDLPCGQCRSCRRIESGNHPDLVIIEPEGQS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 100 -GVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAI 178
Cdd:pfam13177 81 iKIDQIRELQKEFSKSPYEGKKKVYIIEDAEKMTASAANSLLKFLEEPPGNTVIILLTENPSRLLPTIRSRCQIIRFKPL 160
|
.
gi 1081111669 179 S 179
Cdd:pfam13177 161 S 161
|
|
| PRK08058 |
PRK08058 |
DNA polymerase III subunit delta'; Validated |
21-187 |
9.01e-44 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181214 [Multi-domain] Cd Length: 329 Bit Score: 158.55 E-value: 9.01e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 21 QTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSDDGEPCNECAICKGITQGTNNDVIEI--DAASN 98
Cdd:PRK08058 11 QPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVapDGQSI 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 99 NgVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAI 178
Cdd:PRK08058 91 K-KDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEFRPL 169
|
....*....
gi 1081111669 179 SSDQIIDRL 187
Cdd:PRK08058 170 PPESLIQRL 178
|
|
| rfc |
PRK00440 |
replication factor C small subunit; Reviewed |
10-264 |
1.56e-33 |
|
replication factor C small subunit; Reviewed
Pssm-ID: 234763 [Multi-domain] Cd Length: 319 Bit Score: 129.99 E-value: 1.56e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 10 YRPQSFDDVVGQTHVTKTLRNAISKGKQSHaYIFSGPRGTGKTSIAKVFAKAINclnsddGEPCNEcaickgitqgtnnD 89
Cdd:PRK00440 11 YRPRTLDEIVGQEEIVERLKSYVKEKNMPH-LLFAGPPGTGKTTAALALARELY------GEDWRE-------------N 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 90 VIEIDAASNNGVDEIRN-IRDKVKYAPS-ESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTII 167
Cdd:PRK00440 71 FLELNASDERGIDVIRNkIKEFARTAPVgGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQ 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 168 SRAQRFDFKAISSDQIIDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMdQAIAFGDERLTLQDALNVTGSVDEA 247
Cdd:PRK00440 151 SRCAVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKAINAL-QAAAATGKEVTEEAVYKITGTARPE 229
|
250
....*....|....*..
gi 1081111669 248 ALNELFNDIVKSDVKAA 264
Cdd:PRK00440 230 EIREMIELALNGDFTEA 246
|
|
| PRK12402 |
PRK12402 |
replication factor C small subunit 2; Reviewed |
10-264 |
8.22e-33 |
|
replication factor C small subunit 2; Reviewed
Pssm-ID: 237090 [Multi-domain] Cd Length: 337 Bit Score: 128.57 E-value: 8.22e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 10 YRPQSFDDVVGQTHVTKTLRNAISKGKQSHaYIFSGPRGTGKTSIAKVFAKAINclnsddGEPcnecaickgitqgTNND 89
Cdd:PRK12402 9 YRPALLEDILGQDEVVERLSRAVDSPNLPH-LLVQGPPGSGKTAAVRALARELY------GDP-------------WENN 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 90 VIEIDAAS--NNGVDEIRN-----------------IRDKVK--------YAPSESKYKVYIIDEVHMLTTGAFNALLKT 142
Cdd:PRK12402 69 FTEFNVADffDQGKKYLVEdprfahflgtdkrirssKIDNFKhvlkeyasYRPLSADYKTILLDNAEALREDAQQALRRI 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 143 LEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISSDQIIDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALsIMD 222
Cdd:PRK12402 149 MEQYSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAI-LTL 227
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 1081111669 223 QAIAFGDERLTLQDALNVTGSVD-EAALNELFNDIVKSDVKAA 264
Cdd:PRK12402 228 QTAALAAGEITMEAAYEALGDVGtDEVIESLLDAAEAGDFTDA 270
|
|
| PRK13342 |
PRK13342 |
recombination factor protein RarA; Reviewed |
7-243 |
4.12e-32 |
|
recombination factor protein RarA; Reviewed
Pssm-ID: 237355 [Multi-domain] Cd Length: 413 Bit Score: 128.28 E-value: 4.12e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 7 YRMyRPQSFDDVVGQTHVT---KTLRNAISKGKQSHAyIFSGPRGTGKTSIAKVFAKAinclnsddgepcnecaickgit 83
Cdd:PRK13342 4 ERM-RPKTLDEVVGQEHLLgpgKPLRRMIEAGRLSSM-ILWGPPGTGKTTLARIIAGA---------------------- 59
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 84 qgTNNDVIEIDAAsNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHmlttgAFN-----ALLKTLEEppAHAIFILATTE 158
Cdd:PRK13342 60 --TDAPFEALSAV-TSGVKDLREVIEEARQRRSAGRRTILFIDEIH-----RFNkaqqdALLPHVED--GTITLIGATTE 129
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 159 -P-HKIPPTIISRAQRFDFKAISSD---QIIDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMDQAIAFGdERLT 233
Cdd:PRK13342 130 nPsFEVNPALLSRAQVFELKPLSEEdieQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLELAALGV-DSIT 208
|
250
....*....|
gi 1081111669 234 LQDALNVTGS 243
Cdd:PRK13342 209 LELLEEALQK 218
|
|
| PRK07940 |
PRK07940 |
DNA polymerase III subunit delta'; Validated |
15-212 |
5.25e-32 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236134 [Multi-domain] Cd Length: 394 Bit Score: 127.34 E-value: 5.25e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 15 FDDVVGQTHVTKTLRNA---------ISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINClnSDDGEP-CNECAICKGITQ 84
Cdd:PRK07940 4 WDDLVGQEAVVAELRAAaraaradvaAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQC--TDPDEPgCGECRACRTVLA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 85 GTNNDV--IEIDAASNnGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKI 162
Cdd:PRK07940 82 GTHPDVrvVAPEGLSI-GVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDV 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1081111669 163 PPTIISRAQRFDFKAISSDQIIDRLkyvANSQSLDYDDAalEFIAKASEG 212
Cdd:PRK07940 161 LPTIRSRCRHVALRTPSVEAVAEVL---VRRDGVDPETA--RRAARASQG 205
|
|
| PRK07399 |
PRK07399 |
DNA polymerase III subunit delta'; Validated |
15-212 |
9.32e-32 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236011 [Multi-domain] Cd Length: 314 Bit Score: 125.01 E-value: 9.32e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 15 FDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAIncLNSDDGEPCNECAICKG------------I 82
Cdd:PRK07399 3 FANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGL--LSQGSPSKNIRRRLEEGnhpdllwveptyQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 83 TQGT--NNDVIEIDAASNNG-----VDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEpPAHAIFILA 155
Cdd:PRK07399 81 HQGKliTASEAEEAGLKRKAppqirLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEE-PGNGTLILI 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1081111669 156 TTEPHKIPPTIISRAQRFDFKAISSDQIIDRLKYVANSQSLDYDDAALEFIAKASEG 212
Cdd:PRK07399 160 APSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEILNINFPELLALAQGSPG 216
|
|
| PRK05564 |
PRK05564 |
DNA polymerase III subunit delta'; Validated |
14-348 |
1.61e-26 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180132 [Multi-domain] Cd Length: 313 Bit Score: 110.12 E-value: 1.61e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 14 SFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAInclnsddgepcnecaicKGITQGTNN-DVIE 92
Cdd:PRK05564 2 SFHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKI-----------------LGKSQQREYvDIIE 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 93 IDAASNN--GVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRA 170
Cdd:PRK05564 65 FKPINKKsiGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRC 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 171 QRFDFKAISSDQIIDRLKYVANSQSLDYDDAALEFiakaSEGgmrdalsIMDQAIAF-GDErlTLQDALNVTgsvdeaal 249
Cdd:PRK05564 145 QIYKLNRLSKEEIEKFISYKYNDIKEEEKKSAIAF----SDG-------IPGKVEKFiEDD--SLKNIRNMS-------- 203
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 250 NELFNDIVKSDVKAAFNRYHHFISEGKEVNRLINDMIYFVRDTIMNKTSNESvhfESLIHFD-------------LDMLY 316
Cdd:PRK05564 204 LEILKDIKKSNINILLKYENFLIKYKENWEEILTCILSYIRDSLLYKETGNE---ELIINIDkiedikhisekfsYKKLN 280
|
330 340 350
....*....|....*....|....*....|..
gi 1081111669 317 RMIDIINDTLVSIRFSVNQSVHFEVLLVKLAE 348
Cdd:PRK05564 281 KMIEIINDTRDNLSSNVNPTLVFDSMLIKMQE 312
|
|
| RarA |
COG2256 |
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, ... |
7-242 |
2.01e-26 |
|
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, recombination and repair];
Pssm-ID: 441857 [Multi-domain] Cd Length: 439 Bit Score: 112.07 E-value: 2.01e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 7 YRMyRPQSFDDVVGQTHVT---KTLRNAISKGkQSHAYIFSGPRGTGKTSIAKVFAKAinclnsddgepcnecaickgit 83
Cdd:COG2256 17 ERM-RPRTLDEVVGQEHLLgpgKPLRRAIEAG-RLSSMILWGPPGTGKTTLARLIANA---------------------- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 84 qgTNNDVIEIDAASnNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHmlttgAFN-----ALLKTLEEppAHAIFILATTE 158
Cdd:COG2256 73 --TDAEFVALSAVT-SGVKDIREVIEEARERRAYGRRTILFVDEIH-----RFNkaqqdALLPHVED--GTITLIGATTE 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 159 -P-HKIPPTIISRAQRFDFKAISSD---QIIDR----LKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMDQAIAF-- 227
Cdd:COG2256 143 nPsFEVNSALLSRCRVFVLKPLSEEdleQLLERaladDERGLGGYKLELDDEALEALARLADGDARRALNALELAVLSap 222
|
250
....*....|....*..
gi 1081111669 228 --GDERLTLQDALNVTG 242
Cdd:COG2256 223 pdGVIEITLELVEEALQ 239
|
|
| PRK05707 |
PRK05707 |
DNA polymerase III subunit delta'; Validated |
34-223 |
6.38e-25 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180215 [Multi-domain] Cd Length: 328 Bit Score: 105.56 E-value: 6.38e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 34 KGKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSDDGEPCNECAICKGITQGTNND--VIEIDAASNN-GVDEIRNIRDK 110
Cdd:PRK05707 18 RGRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDnfVLEPEEADKTiKVDQVRELVSF 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 111 VKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISSDQIIDRLKyv 190
Cdd:PRK05707 98 VVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQ-- 175
|
170 180 190
....*....|....*....|....*....|...
gi 1081111669 191 anSQSLDYDDAALEFIAKASEGGMRDALSIMDQ 223
Cdd:PRK05707 176 --QALPESDERERIELLTLAGGSPLRALQLHEQ 206
|
|
| HLD_clamp_pol_III_gamma_tau |
cd18137 |
helical lid domain of DNA polymerase III subunits gamma and tau; DNA polymerase III subunit ... |
178-242 |
5.95e-24 |
|
helical lid domain of DNA polymerase III subunits gamma and tau; DNA polymerase III subunit gamma/tau is part of the DNA polymerase III holoenzyme. Gamma and tau subunits are isoforms, both containing the helical lid domain. Gamma interacts with the delta subunit to transfer the beta subunit on the DNA while tau serves as a scaffold to help in the dimerization of the core complex. Both are members of the clamp-loader clade of the AAA+ superfamily.
Pssm-ID: 350839 [Multi-domain] Cd Length: 65 Bit Score: 94.88 E-value: 5.95e-24
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1081111669 178 ISSDQIIDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMDQAIAFGDERLTLQDALNVTG 242
Cdd:cd18137 1 ISVEDIVGRLAHILEKEGIEIEDEALELIARAAEGSMRDALSLLDQAIAFGGGRVTLDDVREMLG 65
|
|
| PRK08699 |
PRK08699 |
DNA polymerase III subunit delta'; Validated |
40-234 |
1.02e-23 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181538 [Multi-domain] Cd Length: 325 Bit Score: 102.26 E-value: 1.02e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 40 AYIFSGPRGTGKTSIAKVFAKAINCLNSDDG-EPCNECAICKGITQGTNNDVIEIDAASN---NG-------VDEIRNIR 108
Cdd:PRK08699 23 AWLFAGKKGIGKTAFARFAAQALLCETPAPGhKPCGECMSCHLFGQGSHPDFYEITPLSDepeNGrkllqikIDAVREII 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 109 DKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISSDQIIDRLK 188
Cdd:PRK08699 103 DNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLR 182
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1081111669 189 Y--VANSQS----------LDYDDAALEFIAKASEG-GMRDALSIMDQAIAFGDERLTL 234
Cdd:PRK08699 183 ErgVAEPEErlafhsgaplFDEEPELRALRIKLLDIlAEPRLLKILDYAALFDKEKLPL 241
|
|
| PLN03025 |
PLN03025 |
replication factor C subunit; Provisional |
10-294 |
2.50e-23 |
|
replication factor C subunit; Provisional
Pssm-ID: 178596 [Multi-domain] Cd Length: 319 Bit Score: 100.96 E-value: 2.50e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 10 YRPQSFDDVVGQTHVTKTLRnAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSDDGepcnecaickgitqgtnnd 89
Cdd:PLN03025 7 YRPTKLDDIVGNEDAVSRLQ-VIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNYKEA------------------- 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 90 VIEIDAASNNGVDEIRN-----IRDKVKYAPSesKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPP 164
Cdd:PLN03025 67 VLELNASDDRGIDVVRNkikmfAQKKVTLPPG--RHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIE 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 165 TIISRAQRFDFKAISSDQIIDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMdQAIAFGDERLTLQDALNVTGSV 244
Cdd:PLN03025 145 PIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQALNNL-QATHSGFGFVNQENVFKVCDQP 223
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 1081111669 245 DEAALNELFNDIVKSDVKAAFNRYHHFISEGKEVNRLINDMIYFVRDTIM 294
Cdd:PLN03025 224 HPLHVKNIVRNCLKGKFDDACDGLKQLYDLGYSPTDIITTLFRVVKNYDM 273
|
|
| PRK09112 |
PRK09112 |
DNA polymerase III subunit delta'; Validated |
12-218 |
2.54e-22 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 169667 [Multi-domain] Cd Length: 351 Bit Score: 98.57 E-value: 2.54e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 12 PQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAkvFAKAINCLNSDD--------GEPCNECAICKGIT 83
Cdd:PRK09112 19 PSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLA--FHLANHILSHPDpaeapetlADPDPASPVWRQIA 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 84 QGTNNDVIEID---------AASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFIL 154
Cdd:PRK09112 97 QGAHPNLLHITrpfdektgkFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFIL 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1081111669 155 ATTEPHKIPPTIISRAQRFDFKAISSDQIIDRLKYVANSQSLdyDDAALEFIAKASEGGMRDAL 218
Cdd:PRK09112 177 ISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQGS--DGEITEALLQRSKGSVRKAL 238
|
|
| PRK04195 |
PRK04195 |
replication factor C large subunit; Provisional |
10-260 |
7.51e-21 |
|
replication factor C large subunit; Provisional
Pssm-ID: 235250 [Multi-domain] Cd Length: 482 Bit Score: 95.76 E-value: 7.51e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 10 YRPQSFDDVVGQTHVTKTLR---NAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINClnsddgepcnecaickgitqgt 86
Cdd:PRK04195 8 YRPKTLSDVVGNEKAKEQLRewiESWLKGKPKKALLLYGPPGVGKTSLAHALANDYGW---------------------- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 87 nnDVIEIDAASNNGVDEIRNIrdkVKYAPSES-----KYKVYIIDEVHMLT----TGAFNALLKTLEEPpAHAIfILATT 157
Cdd:PRK04195 66 --EVIELNASDQRTADVIERV---AGEAATSGslfgaRRKLILLDEVDGIHgnedRGGARAILELIKKA-KQPI-ILTAN 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 158 EPHKIPP-TIISRAQRFDFKAISSDQIIDRLKYVANSQSLDYDDAALEFIAKASEGGMRDAlsIMD-QAIAFGDERLTLQ 235
Cdd:PRK04195 139 DPYDPSLrELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSA--INDlQAIAEGYGKLTLE 216
|
250 260
....*....|....*....|....*
gi 1081111669 236 DALNVTGSVDEAALNELFNDIVKSD 260
Cdd:PRK04195 217 DVKTLGRRDREESIFDALDAVFKAR 241
|
|
| PRK06871 |
PRK06871 |
DNA polymerase III subunit delta'; Validated |
31-188 |
9.08e-21 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180738 [Multi-domain] Cd Length: 325 Bit Score: 93.65 E-value: 9.08e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 31 AISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSDDGEPCNECAICKGITQGTNNDVIEIDAASNN--GVDEIRNIR 108
Cdd:PRK06871 17 AFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKdiGVDQVREIN 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 109 DKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISSDQIIDRLK 188
Cdd:PRK06871 97 EKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQ 176
|
|
| PRK06964 |
PRK06964 |
DNA polymerase III subunit delta'; Validated |
39-213 |
1.36e-20 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 235898 [Multi-domain] Cd Length: 342 Bit Score: 93.29 E-value: 1.36e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 39 HAYIFSGPRGTGKTSIAKVFAKAINCLN-SDDGEPCNECAICKGITQGTNND-------VIEIDAASNNG---------- 100
Cdd:PRK06964 22 HALLLHGQAGIGKLDFAQHLAQGLLCETpQPDGEPCGTCAACNWFAQGNHPDyrivrpeALAAEAPGAADeakeadadeg 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 101 ------------VDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIIS 168
Cdd:PRK06964 102 gkktkapskeikIEQVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILS 181
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1081111669 169 RAQRFDFKAISSDQIIDRLKyvanSQSLDYDDAALefiakASEGG 213
Cdd:PRK06964 182 RCRQFPMTVPAPEAAAAWLA----AQGVADADALL-----AEAGG 217
|
|
| 44 |
PHA02544 |
clamp loader, small subunit; Provisional |
5-347 |
1.10e-19 |
|
clamp loader, small subunit; Provisional
Pssm-ID: 222866 [Multi-domain] Cd Length: 316 Bit Score: 90.05 E-value: 1.10e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 5 ALYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFakainclnsddgepCNEcaickgitq 84
Cdd:PHA02544 10 MWEQKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKAL--------------CNE--------- 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 85 gTNNDVIEIDAASNNgVDEIRNirDKVKYAPSES---KYKVYIIDEVHMLTTGAFNALLKTL-EEPPAHAIFILATTEPH 160
Cdd:PHA02544 67 -VGAEVLFVNGSDCR-IDFVRN--RLTRFASTVSltgGGKVIIIDEFDRLGLADAQRHLRSFmEAYSKNCSFIITANNKN 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 161 KIPPTIISRAQRFDFKAISSD-------QIIDRLKYVANSQSLDYDDAAL-EFIAKaseggmrdalsimdqaiAFGDERL 232
Cdd:PHA02544 143 GIIEPLRSRCRVIDFGVPTKEeqiemmkQMIVRCKGILEAEGVEVDMKVLaALVKK-----------------NFPDFRR 205
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 233 TLQ--DALNVTGSVDEAALNELFNDIVKSDVKAAFNRyhhfisEGKEVNRLINDMIYFVrDTIMNKTSNE---SVHFESL 307
Cdd:PHA02544 206 TINelQRYASTGKIDAGILSEVTNSDIDDVVEALKAK------DFKAVRALAPNYANDY-ASFVGKLYDElypQVTPPSI 278
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 1081111669 308 IhfdldmlyRMIDIINDTLVSIRFSVNQSVHFEVLLVKLA 347
Cdd:PHA02544 279 I--------RLIEIIGENNQYHGFAADQEIHLLYLLTQLM 310
|
|
| PRK07471 |
PRK07471 |
DNA polymerase III subunit delta'; Validated |
17-265 |
2.32e-19 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236022 [Multi-domain] Cd Length: 365 Bit Score: 90.09 E-value: 2.32e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 17 DVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAI--NCLNSDDGEPCN--------ECAICKGITQGT 86
Cdd:PRK07471 20 ALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLlaTPPPGGDGAVPPptslaidpDHPVARRIAAGA 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 87 NNDVIEIDAASNNG---------VDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATT 157
Cdd:PRK07471 100 HGGLLTLERSWNEKgkrlrtvitVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSH 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 158 EPHKIPPTIISRAQRFDFKAISSDQIIDrlkyVANSQSLDYDDAALEFIAKASEGGMRDALSIMDQ-AIAFGDERLTLQD 236
Cdd:PRK07471 180 APARLLPTIRSRCRKLRLRPLAPEDVID----ALAAAGPDLPDDPRAALAALAEGSVGRALRLAGGdGLALYRRLTALLD 255
|
250 260
....*....|....*....|....*....
gi 1081111669 237 ALNvtgSVDEAALNELFNDIVKSDVKAAF 265
Cdd:PRK07471 256 TLP---RLDRRALHALADAAAGRDRAARF 281
|
|
| PRK07276 |
PRK07276 |
DNA polymerase III subunit delta'; Validated |
32-176 |
1.29e-17 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180916 [Multi-domain] Cd Length: 290 Bit Score: 83.53 E-value: 1.29e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 32 ISKGKQSHAYIFSGprGTGKTSIAKVFAKAINCLNSDDGEPCNECAICKGITQGTNNDVIEIdaASNNGVDEIRNIRDKV 111
Cdd:PRK07276 18 LEQDRLNHAYLFSG--DFASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVI--EPQGQVIKTDTIRELV 93
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1081111669 112 K-YAPS--ESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFK 176
Cdd:PRK07276 94 KnFSQSgyEGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFP 161
|
|
| PRK05917 |
PRK05917 |
DNA polymerase III subunit delta'; Validated |
105-170 |
1.95e-16 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 102059 [Multi-domain] Cd Length: 290 Bit Score: 79.84 E-value: 1.95e-16
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1081111669 105 RNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRA 170
Cdd:PRK05917 81 RAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRS 146
|
|
| PRK06090 |
PRK06090 |
DNA polymerase III subunit delta'; Validated |
28-188 |
5.75e-16 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180394 [Multi-domain] Cd Length: 319 Bit Score: 79.08 E-value: 5.75e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 28 LRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSDDgEPCNECAICKGITQGTNND--VIEIDAASNN-GVDEI 104
Cdd:PRK06090 15 WKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQS-EACGFCHSCELMQSGNHPDlhVIKPEKEGKSiTVEQI 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 105 RNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISSDQII 184
Cdd:PRK06090 94 RQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAM 173
|
....
gi 1081111669 185 DRLK 188
Cdd:PRK06090 174 QWLK 177
|
|
| PRK08769 |
PRK08769 |
DNA polymerase III subunit delta'; Validated |
31-176 |
2.66e-14 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181551 [Multi-domain] Cd Length: 319 Bit Score: 74.22 E-value: 2.66e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 31 AISKGKQSHAYIFSGPRGTGKTSIAkvFAKAINCLNSDDgEPCNECAICKGITQGTNNDVIEIDAASNNGVD-------- 102
Cdd:PRK08769 19 ALDAGRLGHGLLICGPEGLGKRAVA--LALAEHVLASGP-DPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDklrteivi 95
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1081111669 103 -EIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFK 176
Cdd:PRK08769 96 eQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFK 170
|
|
| PRK04132 |
PRK04132 |
replication factor C small subunit; Provisional |
91-229 |
3.48e-14 |
|
replication factor C small subunit; Provisional
Pssm-ID: 235223 [Multi-domain] Cd Length: 846 Bit Score: 75.65 E-value: 3.48e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 91 IEIDAASNNGVDEIRN-IRDKVKYAP-SESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIIS 168
Cdd:PRK04132 600 LELNASDERGINVIREkVKEFARTKPiGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQS 679
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1081111669 169 RAQRFDFKAISSDQIIDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMDQAIAFGD 229
Cdd:PRK04132 680 RCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDD 740
|
|
| PRK07993 |
PRK07993 |
DNA polymerase III subunit delta'; Validated |
35-169 |
2.14e-13 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181190 [Multi-domain] Cd Length: 334 Bit Score: 71.64 E-value: 2.14e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 35 GKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSDDGEPCNECAICKGITQGTNND--VIEIDAASNN-GVDEIRNIRDKV 111
Cdd:PRK07993 21 GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDyyTLTPEKGKSSlGVDAVREVTEKL 100
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 1081111669 112 KYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISR 169
Cdd:PRK07993 101 YEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSR 158
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
19-169 |
1.09e-12 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 65.63 E-value: 1.09e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 19 VGQTHVTKTLRNAISKGKQSHaYIFSGPRGTGKTSIAKVFAKAINclnsddgepcnecaickgitqGTNNDVIEIDAASN 98
Cdd:cd00009 1 VGQEEAIEALREALELPPPKN-LLLYGPPGTGKTTLARAIANELF---------------------RPGAPFLYLNASDL 58
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 99 NGVDEIRNIRDKVKY-----APSESKYKVYIIDEVHMLTTGAFNALLKTLEE------PPAHAIFILATT--EPHKIPPT 165
Cdd:cd00009 59 LEGLVVAELFGHFLVrllfeLAEKAKPGVLFIDEIDSLSRGAQNALLRVLETlndlriDRENVRVIGATNrpLLGDLDRA 138
|
....
gi 1081111669 166 IISR 169
Cdd:cd00009 139 LYDR 142
|
|
| SpoVK |
COG0464 |
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle ... |
8-236 |
1.21e-12 |
|
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];
Pssm-ID: 440232 [Multi-domain] Cd Length: 397 Bit Score: 69.94 E-value: 1.21e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 8 RMYRPQSFDDVVGQTHVTKTLRNAIS------------KGKQSHAYIFSGPRGTGKTSIAKVFAKAINClnsddgepcne 75
Cdd:COG0464 149 LELREAILDDLGGLEEVKEELRELVAlplkrpelreeyGLPPPRGLLLYGPPGTGKTLLARALAGELGL----------- 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 76 caickgitqgtnnDVIEIDAAsnngvdEI---------RNIRDKVKYAPSESKYkVYIIDEVHMLTTG-----------A 135
Cdd:COG0464 218 -------------PLIEVDLS------DLvskyvgeteKNLREVFDKARGLAPC-VLFIDEADALAGKrgevgdgvgrrV 277
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 136 FNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQR-FDFKAISSDQIIDRLKYVANSQSLDyDDAALEFIAKASEGG- 213
Cdd:COG0464 278 VNTLLTEMEELRSDVVVIAATNRPDLLDPALLRRFDEiIFFPLPDAEERLEIFRIHLRKRPLD-EDVDLEELAEATEGLs 356
|
250 260
....*....|....*....|....*..
gi 1081111669 214 ---MRDAL-SIMDQAIAFGDERLTLQD 236
Cdd:COG0464 357 gadIRNVVrRAALQALRLGREPVTTED 383
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
41-173 |
6.98e-12 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 63.00 E-value: 6.98e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 41 YIFSGPRGTGKTSIAKVFAKAINClnsddgepcnecaickgitqgtnnDVIEIDAAS--NNGVDE-IRNIRDKVKYAPSE 117
Cdd:pfam00004 1 LLLYGPPGTGKTTLAKAVAKELGA------------------------PFIEISGSElvSKYVGEsEKRLRELFEAAKKL 56
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 118 SKyKVYIIDEVHMLTT-----------GAFNALLKTLEEPPAHA---IFILATTEPHKIPPTIISRAQRF 173
Cdd:pfam00004 57 AP-CVIFIDEIDALAGsrgsggdsesrRVVNQLLTELDGFTSSNskvIVIAATNRPDKLDPALLGRFDRI 125
|
|
| PRK07132 |
PRK07132 |
DNA polymerase III subunit delta'; Validated |
116-188 |
2.04e-11 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180855 [Multi-domain] Cd Length: 299 Bit Score: 65.13 E-value: 2.04e-11
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1081111669 116 SESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISSDQIIDRLK 188
Cdd:PRK07132 87 VQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLL 159
|
|
| PRK13341 |
PRK13341 |
AAA family ATPase; |
8-186 |
3.13e-11 |
|
AAA family ATPase;
Pssm-ID: 237354 [Multi-domain] Cd Length: 725 Bit Score: 66.23 E-value: 3.13e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 8 RMyRPQSFDDVVGQTHVT---KTLRNAISKGKQSHAyIFSGPRGTGKTSIAKVFAKAinclnsddgepcnecaickgitq 84
Cdd:PRK13341 21 RL-RPRTLEEFVGQDHILgegRLLRRAIKADRVGSL-ILYGPPGVGKTTLARIIANH----------------------- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 85 gTNNDVIEIDAASNnGVDEIRNirdKVKYAPSESKY----KVYIIDEVHMLTTGAFNALLKTLEEppAHAIFILATTE-P 159
Cdd:PRK13341 76 -TRAHFSSLNAVLA-GVKDLRA---EVDRAKERLERhgkrTILFIDEVHRFNKAQQDALLPWVEN--GTITLIGATTEnP 148
|
170 180 190
....*....|....*....|....*....|.
gi 1081111669 160 H-KIPPTIISRAQRFDFKAISSD---QIIDR 186
Cdd:PRK13341 149 YfEVNKALVSRSRLFRLKSLSDEdlhQLLKR 179
|
|
| PRK05818 |
PRK05818 |
DNA polymerase III subunit delta'; Validated |
58-181 |
2.52e-10 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 235618 [Multi-domain] Cd Length: 261 Bit Score: 61.39 E-value: 2.52e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 58 FAKAINCLNSDdgEPCNECAICKGITQGTNNDVIEI-DAASNNGVDEIRNIRDKVKYAPSESK-YKVYIIDEVHMLTTGA 135
Cdd:PRK05818 27 YLTSIVCTKAN--GFCKTCESCLKILNGKYNDFYLIfDQKNPIKKEDALSIINKLNRPSVESNgKKIYIIYGIEKLNKQS 104
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 1081111669 136 FNALLKTLEEPPAHAIFILATTEPHKIPPTIISR---------AQRFDFKAISSD 181
Cdd:PRK05818 105 ANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRcvqyvvlskEKKVPFKVESND 159
|
|
| COG1223 |
COG1223 |
Predicted ATPase, AAA+ superfamily [General function prediction only]; |
15-277 |
4.45e-08 |
|
Predicted ATPase, AAA+ superfamily [General function prediction only];
Pssm-ID: 440836 [Multi-domain] Cd Length: 246 Bit Score: 54.12 E-value: 4.45e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 15 FDDVVGQTHVTKTLRNAISKGKQ-----------SHAYIFSGPRGTGKTSIAKVFAKAINC----LNSDDgepcnecAIC 79
Cdd:COG1223 1 LDDVVGQEEAKKKLKLIIKELRRrenlrkfglwpPRKILFYGPPGTGKTMLAEALAGELKLplltVRLDS-------LIG 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 80 K--GitqgtnndvieiDAASNngvdeIRNIRDKVKYAPSeskykVYIIDEVHMLT--------TG----AFNALLKTLEE 145
Cdd:COG1223 74 SylG------------ETARN-----LRKLFDFARRAPC-----VIFFDEFDAIAkdrgdqndVGevkrVVNALLQELDG 131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 146 PPAHAIFILATTEPHKIPPTIISraqRFD----FKAISSDQIIDRLKYVANSQSLDYdDAALEFIAKASEGgmrdalsim 221
Cdd:COG1223 132 LPSGSVVIAATNHPELLDSALWR---RFDevieFPLPDKEERKEILELNLKKFPLPF-ELDLKKLAKKLEG--------- 198
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 1081111669 222 dqaIAFGD-ERLtLQDALnvtgsvdEAALNELFNDIVKSDVKAAFNRYHHFISEGKE 277
Cdd:COG1223 199 ---LSGADiEKV-LKTAL-------KKAILEDREKVTKEDLEEALKQRKERKKEPKK 244
|
|
| ruvB |
PRK00080 |
Holliday junction branch migration DNA helicase RuvB; |
11-252 |
8.58e-08 |
|
Holliday junction branch migration DNA helicase RuvB;
Pssm-ID: 234619 [Multi-domain] Cd Length: 328 Bit Score: 54.37 E-value: 8.58e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 11 RPQSFDDVVGQTHVTKTLRNAISKGKQ-----SHAyIFSGPRGTGKTSIAKVFAKAINclnsddgepcnecAICKgITQG 85
Cdd:PRK00080 20 RPKSLDEFIGQEKVKENLKIFIEAAKKrgealDHV-LLYGPPGLGKTTLANIIANEMG-------------VNIR-ITSG 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 86 -------------TN---NDVIEIdaasnngvDEI----RNIRdkvkyapsESKYKV---YIIDevhmLTTGafnallkt 142
Cdd:PRK00080 85 palekpgdlaailTNleeGDVLFI--------DEIhrlsPVVE--------EILYPAmedFRLD----IMIG-------- 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 143 lEEPPAHAI------FIL--ATTEPHKIPPTIISR---AQRFDF---KAISsdQIIDRlkyvaNSQSLDY---DDAALEf 205
Cdd:PRK00080 137 -KGPAARSIrldlppFTLigATTRAGLLTSPLRDRfgiVQRLEFytvEELE--KIVKR-----SARILGVeidEEGALE- 207
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 1081111669 206 IAKASEGGMRDALS----IMDQAIAFGDERLTL---QDALNVTGsVDEAALNEL 252
Cdd:PRK00080 208 IARRSRGTPRIANRllrrVRDFAQVKGDGVITKeiaDKALDMLG-VDELGLDEM 260
|
|
| HLD_clamp_RFC |
cd18140 |
helical lid domain of replication factor C subunit; Replication factor C (RFC) is five-protein ... |
178-241 |
9.81e-08 |
|
helical lid domain of replication factor C subunit; Replication factor C (RFC) is five-protein clamp loader complex that forms a stable ATP-dependent complex with the sliding clamp, PCNA, which binds specifically to primed DNA. RFC subunits belong to the clamp loader clade of the AAA+ superfamily.
Pssm-ID: 350842 [Multi-domain] Cd Length: 63 Bit Score: 49.06 E-value: 9.81e-08
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1081111669 178 ISSDQIIDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMdQAIAFGDERLTLQDALNVT 241
Cdd:cd18140 1 LSKEQIVKRLREICKKEGVKIDEEALEAIAEKSEGDMRKAINDL-QAAAAGGGVITEEDVYEVA 63
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
41-176 |
1.28e-07 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 51.22 E-value: 1.28e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 41 YIFSGPRGTGKTSIAKVFAKAINCLNSD----DGEPcnecaICKGITQGTNNDVIEIDAASNNGVDEIRNIRDKVKYaps 116
Cdd:smart00382 5 ILIVGPPGSGKTTLARALARELGPPGGGviyiDGED-----ILEEVLDQLLLIIVGGKKASGSGELRLRLALALARK--- 76
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1081111669 117 eSKYKVYIIDEVHMLTTGAFNALL--------KTLEEPPAHAIFILATTEPHKIPPTIISRaqRFDFK 176
Cdd:smart00382 77 -LKPDVLILDEITSLLDAEQEALLllleelrlLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRR 141
|
|
| RecA-like_protease |
cd19481 |
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of ... |
41-176 |
4.06e-07 |
|
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410889 [Multi-domain] Cd Length: 158 Bit Score: 49.97 E-value: 4.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 41 YIFSGPRGTGKTSIAKVFAkainclnsddGEpcnecaickgitqgTNNDVIEIDAASNNGV---DEIRNIRDKVKYApSE 117
Cdd:cd19481 29 ILLYGPPGTGKTLLAKALA----------GE--------------LGLPLIVVKLSSLLSKyvgESEKNLRKIFERA-RR 83
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1081111669 118 SKYKVYIIDEVHML------------TTGAFNALLKTLEEPPA--HAIFILATTEPHKIPPTIIsRAQRFDFK 176
Cdd:cd19481 84 LAPCILFIDEIDAIgrkrdssgesgeLRRVLNQLLTELDGVNSrsKVLVIAATNRPDLLDPALL-RPGRFDEV 155
|
|
| HLD_clamp |
cd18133 |
helical lid domain of clamp loader-like AAA+ proteins; Clamp loader complexes are multisubunit ... |
181-229 |
1.24e-06 |
|
helical lid domain of clamp loader-like AAA+ proteins; Clamp loader complexes are multisubunit complexes that play an important role in DNA replication. They open sliding clamps for assembly and close them around DNA, specifically targeting them to sites where DNA synthesis is initiated and orienting them correctly for replication. The subunits belong to the clamp loader clade of AAA+ superfamily.
Pssm-ID: 350838 [Multi-domain] Cd Length: 65 Bit Score: 45.92 E-value: 1.24e-06
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 1081111669 181 DQIIDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMDQAIAFGD 229
Cdd:cd18133 4 EQLKRRLAAIAEQEKLKLDDAALQALAYISEGDLRKALNALQRAAALGD 52
|
|
| PRK08485 |
PRK08485 |
DNA polymerase III subunit delta'; Validated |
116-176 |
1.60e-06 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236274 [Multi-domain] Cd Length: 206 Bit Score: 48.88 E-value: 1.60e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1081111669 116 SESKYKVYIIdEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFK 176
Cdd:PRK08485 52 AESEEKIIVI-AAPSYGIEAQNALLKILEEPPKNICFIIVAKSKNLLLPTIRSRLIIEKRK 111
|
|
| PRK04132 |
PRK04132 |
replication factor C small subunit; Provisional |
10-59 |
3.00e-06 |
|
replication factor C small subunit; Provisional
Pssm-ID: 235223 [Multi-domain] Cd Length: 846 Bit Score: 50.22 E-value: 3.00e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 1081111669 10 YRPQSFDDVVGQTHVTKTLRNAISKGKQSHaYIFSGPRGTGK--TSIAKVFA 59
Cdd:PRK04132 13 YRPQRLDDIVGQEHIVKRLKHYVKTGSMPH-LLFAGPPGVGKclTGDTKVIA 63
|
|
| RuvB_N |
pfam05496 |
Holliday junction DNA helicase RuvB P-loop domain; The RuvB protein makes up part of the ... |
11-60 |
4.33e-06 |
|
Holliday junction DNA helicase RuvB P-loop domain; The RuvB protein makes up part of the RuvABC revolvasome which catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalyzed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Pssm-ID: 398900 [Multi-domain] Cd Length: 159 Bit Score: 46.72 E-value: 4.33e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 1081111669 11 RPQSFDDVVGQTHVTKTLRNAISKGKQ-----SHAyIFSGPRGTGKTSIAKVFAK 60
Cdd:pfam05496 2 RPRTLDEYIGQEKVKENLKIFIEAAKQrgealDHV-LLYGPPGLGKTTLANIIAN 55
|
|
| PRK06581 |
PRK06581 |
DNA polymerase III subunit delta'; Validated |
96-198 |
5.95e-06 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 235833 [Multi-domain] Cd Length: 263 Bit Score: 47.92 E-value: 5.95e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 96 ASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDF 175
Cdd:PRK06581 66 AKNISIEQIRKLQDFLSKTSAISGYKVAIIYSAELMNLNAANSCLKILEDAPKNSYIFLITSRAASIISTIRSRCFKINV 145
|
90 100
....*....|....*....|....*..
gi 1081111669 176 K----AISSDQIIDRLKYVANSQSLDY 198
Cdd:PRK06581 146 RssilHAYNELYSQFIQPIADNKTLDF 172
|
|
| TIP49 |
COG1224 |
DNA helicase TIP49, TBP-interacting protein [Transcription]; |
102-259 |
1.39e-04 |
|
DNA helicase TIP49, TBP-interacting protein [Transcription];
Pssm-ID: 440837 [Multi-domain] Cd Length: 452 Bit Score: 44.58 E-value: 1.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 102 DEIRNIRDK-VKYAPSESKYK----VYIIDEVHMLTTGAFNALLKTLEEPPAhAIFILAT---------TE---PHKIPP 164
Cdd:COG1224 270 SEVRKQVDElVKKWIEEGKAElvpgVLFIDDAHMLDIEAFSFLTRAMESELA-PIIILATnrgitkirgTDiesPHGIPL 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081111669 165 TIISRAQRFDFKAISSDQIIDRLKYVANSQSLDYDDAALEFIAK-ASEGGMRDALSIMDQA--IA--FGDERLTLQDaln 239
Cdd:COG1224 349 DLLDRLLIIPTRPYTEDEIREIIKIRAEEEDIELSDDALEELTKiGVERSLRYAVQLLEPAyiIAkrRGRSKVTVED--- 425
|
170 180
....*....|....*....|
gi 1081111669 240 vtgsVDEAAlnELFNDIVKS 259
Cdd:COG1224 426 ----VEEAS--KLFADVKES 439
|
|
| RuvB |
COG2255 |
Holliday junction resolvasome RuvABC, ATP-dependent DNA helicase subunit RuvB [Replication, ... |
11-60 |
1.64e-04 |
|
Holliday junction resolvasome RuvABC, ATP-dependent DNA helicase subunit RuvB [Replication, recombination and repair];
Pssm-ID: 441856 [Multi-domain] Cd Length: 337 Bit Score: 43.92 E-value: 1.64e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 1081111669 11 RPQSFDDVVGQTHVTKTLRNAISKGKQ-----SHAyIFSGPRGTGKTSIAKVFAK 60
Cdd:COG2255 23 RPKRLDEYIGQEKVKENLKIFIEAAKKrgealDHV-LLYGPPGLGKTTLAHIIAN 76
|
|
| TIP49 |
pfam06068 |
TIP49 P-loop domain; This family consists of the C-terminal region of several eukaryotic and ... |
122-170 |
2.86e-03 |
|
TIP49 P-loop domain; This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities.TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases.
Pssm-ID: 399217 [Multi-domain] Cd Length: 347 Bit Score: 39.99 E-value: 2.86e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1081111669 122 VYIIDEVHMLTTGAFNALLKTLEEPPAhAIFILATT------------EPHKIPPTIISRA 170
Cdd:pfam06068 277 VLFIDEVHMLDIECFSFLNRALESDLA-PIVILATNrgictirgtdiiSPHGIPLDLLDRL 336
|
|
| |
