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Conserved domains on  [gi|1081115599|gb|OFS64731|]
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hypothetical protein HMPREF3177_00065 [Nosocomiicoccus sp. HMSC09A07]

Protein Classification

single stranded DNA-binding domain-containing protein( domain architecture ID 489)

single stranded DNA-binding domain-containing protein may bind preferentially to single-stranded DNA

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RPA_2b-aaRSs_OBF_like super family cl09930
Replication protein A, class 2b aminoacyl-tRNA synthetases, and related proteins with ...
 1-145 1.06e-31

Replication protein A, class 2b aminoacyl-tRNA synthetases, and related proteins with oligonucleotide/oligosaccharide (OB) fold.; This superfamily includes two oligonucleotide/oligosaccharide binding fold (OBF) domain families. One of these contains the OBF domains of the large (RPA1, 70kDa), middle (RPA2, RPA4, 32kDa) and small (RPA3, 14 kDa) subunits of human heterotrimeric Replication protein A (RPA), and similar domains. RPA is a nuclear single-strand (ss) DNA-binding protein involved in most aspects of DNA metabolism. This family includes the four OBF domains of RPA1 [DNA-binding domain (DBD)-A, DBD-B, DBD-C, and RPA1N], the OBF domain of RPA2 (RPA2 DBD-D), RPA3, and the OBF domain of RPA4. The major DNA binding activity of human RPA and Saccharomyces cerevisiae RPA appears to be associated with DBD-A and -B, of RPA1. RPA1 DBD-C shows only weak ssDNA-binding activity and is involved in trimerization. The other OBF domain family in this superfamily is the N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids to their cognate tRNAs during protein biosynthesis. Class 2b aaRSs include the homodimeric aspartyl-, asparaginyl-, and lysyl-tRNA synthetases.


The actual alignment was detected with superfamily member PRK07275:

Pssm-ID: 471953 [Multi-domain]  Cd Length: 162  Bit Score: 110.75  E-value: 1.06e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081115599   1 MFNNVSLSGRIAKEIKVFENEKNR-VGVFTLAVQRPFKNKEDEYETDFIRIVVFNYNVEILEKYTDKGSLIGVEGRVQTS 79
Cdd:PRK07275    1 MINNVVLVGRMTRDAELRYTPSNVaVATFTLAVNRTFKSQNGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081115599  80 SYVNKDGEKVYTTEILGKRIILLETKEQREKRKGN----------------KELEKVDGYSEDENDSYDNYLANIQDDDL 143
Cdd:PRK07275   81 NYENQQGQRVYVTEVVADNFQMLESRATREGGSGGsynggfnnapsansysAPAQQTPNFGRDESPFGNSNPMDISDDDL 160


                  ..
gi 1081115599 144 PF 145
Cdd:PRK07275  161 PF 162
 
Name Accession Description Interval E-value
PRK07275 PRK07275
single-stranded DNA-binding protein; Provisional
 1-145 1.06e-31

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180915 [Multi-domain]  Cd Length: 162  Bit Score: 110.75  E-value: 1.06e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081115599   1 MFNNVSLSGRIAKEIKVFENEKNR-VGVFTLAVQRPFKNKEDEYETDFIRIVVFNYNVEILEKYTDKGSLIGVEGRVQTS 79
Cdd:PRK07275    1 MINNVVLVGRMTRDAELRYTPSNVaVATFTLAVNRTFKSQNGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081115599  80 SYVNKDGEKVYTTEILGKRIILLETKEQREKRKGN----------------KELEKVDGYSEDENDSYDNYLANIQDDDL 143
Cdd:PRK07275   81 NYENQQGQRVYVTEVVADNFQMLESRATREGGSGGsynggfnnapsansysAPAQQTPNFGRDESPFGNSNPMDISDDDL 160


                  ..
gi 1081115599 144 PF 145
Cdd:PRK07275  161 PF 162
Ssb COG0629
Single-stranded DNA-binding protein [Replication, recombination and repair];
3-109 2.45e-29

Single-stranded DNA-binding protein [Replication, recombination and repair];


Pssm-ID: 440394  Cd Length: 116  Bit Score: 103.00  E-value: 2.45e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081115599   3 NNVSLSGRIAKEIKVFENEKNR-VGVFTLAVQRPFKNKEDEY--ETDFIRIVVFNYNVEILEKYTDKGSLIGVEGRVQTS 79
Cdd:COG0629     2 NKVTLVGRLGKDPELRYTPSGTaVANFRLAVNRRYKDQDGEWkdETDWHRVVAWGKLAENAAEYLKKGDKVYVEGRLRTR 81

                          90       100       110
                  ....*....|....*....|....*....|
gi 1081115599  80 SYVNKDGEKVYTTEILGKRIILLETKEQRE 109
Cdd:COG0629    82 SWEDKDGQKRYTTEVVADEIQFLGSRPSGG 111
ssb TIGR00621
single stranded DNA-binding protein (ssb); All proteins in this family for which functions are ...
 1-145 1.89e-26

single stranded DNA-binding protein (ssb); All proteins in this family for which functions are known are single-stranded DNA binding proteins that function in many processes including transcription, repair, replication and recombination. Members encoded between genes for ribosomal proteins S6 and S18 should be annotated as primosomal protein N (PriB). Forms in gamma-protoeobacteria are much shorter and poorly recognized by this model. Additional members of this family include phage proteins. Eukaryotic members are organellar proteins. [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273179 [Multi-domain]  Cd Length: 164  Bit Score: 97.10  E-value: 1.89e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081115599   1 MFNNVSLSGRIAK--EIKVFENeKNRVGVFTLAVQRPFKNKEDEY--ETDFIRIVVFNYNVEILEKYTDKGSLIGVEGRV 76
Cdd:TIGR00621   3 MVNKVILVGRLTRdpELRYTPS-GNAVANFTLATNRRWKDQDGEWkeETEWHDIVIFGRLAEVAAQYLKKGSLVYVEGRL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081115599  77 QTSSYVNKDGEKVYTTEILGKRIILLETKEQREKrKGNKELEKV---------------DGYSEDENDSYDNYLANIQDD 141
Cdd:TIGR00621  82 RTRKWEDQNGQKRSKTEIIADNVQLLDLLGARAQ-GGEFSGGGGsgnrpqggqeqsatgKDPAQSAPQSGSADPIDGDDD 160


                  ....
gi 1081115599 142 DLPF 145
Cdd:TIGR00621 161 EIPF 164
SSB pfam00436
Single-strand binding protein family; This family includes single stranded binding proteins ...
 2-102 1.25e-24

Single-strand binding protein family; This family includes single stranded binding proteins and also the primosomal replication protein N (PriB). PriB forms a complex with PriA, PriC and ssDNA.


Pssm-ID: 425680  Cd Length: 103  Bit Score: 90.76  E-value: 1.25e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081115599   2 FNNVSLSGRIAK--EIKVFENeKNRVGVFTLAVQRPFKNKEDEYE-TDFIRIVVFNYNVEILEKYTDKGSLIGVEGRVQT 78
Cdd:pfam00436   1 MNKVILVGRLTRdpELRYTPN-GNAVANFTLATNRRFKDRGEGDEeTDFHRVVVFGKLAEVAAQYLKKGSLVYVEGRLQT 79

                          90       100
                  ....*....|....*....|....
gi 1081115599  79 SSYVNKDGEKVYTTEILGKRIILL 102
Cdd:pfam00436  80 RKYEDQEGQKRYVTEIVADEVQFL 103
SSB_OBF cd04496
SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs ...
 5-102 2.37e-23

SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart at forks that have stalled at sites of DNA damage. It also plays a role in the assembly of primosome during replication initiation at the bacteriophage phiX174 origin. PriB physically interacts with SSB and binds ssDNA with high affinity.


Pssm-ID: 239942  Cd Length: 100  Bit Score: 87.28  E-value: 2.37e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081115599   5 VSLSGRIAKEIKVFENEKNRVGV-FTLAVQRPFKNKED-EYETDFIRIVVFNYNVEILEKYTDKGSLIGVEGRVQTSSYV 82
Cdd:cd04496     1 VILIGRLGKDPELRYTPSGTPVArFSLAVNRRRKDRDEeEEETDWIRVVAFGKLAENAAKYLKKGDLVYVEGRLRTRSWE 80

                          90       100
                  ....*....|....*....|
gi 1081115599  83 NKDGEKVYTTEILGKRIILL 102
Cdd:cd04496    81 DKDGQKRYGTEVVADRIEFL 100
 
Name Accession Description Interval E-value
PRK07275 PRK07275
single-stranded DNA-binding protein; Provisional
 1-145 1.06e-31

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180915 [Multi-domain]  Cd Length: 162  Bit Score: 110.75  E-value: 1.06e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081115599   1 MFNNVSLSGRIAKEIKVFENEKNR-VGVFTLAVQRPFKNKEDEYETDFIRIVVFNYNVEILEKYTDKGSLIGVEGRVQTS 79
Cdd:PRK07275    1 MINNVVLVGRMTRDAELRYTPSNVaVATFTLAVNRTFKSQNGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081115599  80 SYVNKDGEKVYTTEILGKRIILLETKEQREKRKGN----------------KELEKVDGYSEDENDSYDNYLANIQDDDL 143
Cdd:PRK07275   81 NYENQQGQRVYVTEVVADNFQMLESRATREGGSGGsynggfnnapsansysAPAQQTPNFGRDESPFGNSNPMDISDDDL 160


                  ..
gi 1081115599 144 PF 145
Cdd:PRK07275  161 PF 162
Ssb COG0629
Single-stranded DNA-binding protein [Replication, recombination and repair];
3-109 2.45e-29

Single-stranded DNA-binding protein [Replication, recombination and repair];


Pssm-ID: 440394  Cd Length: 116  Bit Score: 103.00  E-value: 2.45e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081115599   3 NNVSLSGRIAKEIKVFENEKNR-VGVFTLAVQRPFKNKEDEY--ETDFIRIVVFNYNVEILEKYTDKGSLIGVEGRVQTS 79
Cdd:COG0629     2 NKVTLVGRLGKDPELRYTPSGTaVANFRLAVNRRYKDQDGEWkdETDWHRVVAWGKLAENAAEYLKKGDKVYVEGRLRTR 81

                          90       100       110
                  ....*....|....*....|....*....|
gi 1081115599  80 SYVNKDGEKVYTTEILGKRIILLETKEQRE 109
Cdd:COG0629    82 SWEDKDGQKRYTTEVVADEIQFLGSRPSGG 111
ssb TIGR00621
single stranded DNA-binding protein (ssb); All proteins in this family for which functions are ...
 1-145 1.89e-26

single stranded DNA-binding protein (ssb); All proteins in this family for which functions are known are single-stranded DNA binding proteins that function in many processes including transcription, repair, replication and recombination. Members encoded between genes for ribosomal proteins S6 and S18 should be annotated as primosomal protein N (PriB). Forms in gamma-protoeobacteria are much shorter and poorly recognized by this model. Additional members of this family include phage proteins. Eukaryotic members are organellar proteins. [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273179 [Multi-domain]  Cd Length: 164  Bit Score: 97.10  E-value: 1.89e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081115599   1 MFNNVSLSGRIAK--EIKVFENeKNRVGVFTLAVQRPFKNKEDEY--ETDFIRIVVFNYNVEILEKYTDKGSLIGVEGRV 76
Cdd:TIGR00621   3 MVNKVILVGRLTRdpELRYTPS-GNAVANFTLATNRRWKDQDGEWkeETEWHDIVIFGRLAEVAAQYLKKGSLVYVEGRL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081115599  77 QTSSYVNKDGEKVYTTEILGKRIILLETKEQREKrKGNKELEKV---------------DGYSEDENDSYDNYLANIQDD 141
Cdd:TIGR00621  82 RTRKWEDQNGQKRSKTEIIADNVQLLDLLGARAQ-GGEFSGGGGsgnrpqggqeqsatgKDPAQSAPQSGSADPIDGDDD 160


                  ....
gi 1081115599 142 DLPF 145
Cdd:TIGR00621 161 EIPF 164
SSB pfam00436
Single-strand binding protein family; This family includes single stranded binding proteins ...
 2-102 1.25e-24

Single-strand binding protein family; This family includes single stranded binding proteins and also the primosomal replication protein N (PriB). PriB forms a complex with PriA, PriC and ssDNA.


Pssm-ID: 425680  Cd Length: 103  Bit Score: 90.76  E-value: 1.25e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081115599   2 FNNVSLSGRIAK--EIKVFENeKNRVGVFTLAVQRPFKNKEDEYE-TDFIRIVVFNYNVEILEKYTDKGSLIGVEGRVQT 78
Cdd:pfam00436   1 MNKVILVGRLTRdpELRYTPN-GNAVANFTLATNRRFKDRGEGDEeTDFHRVVVFGKLAEVAAQYLKKGSLVYVEGRLQT 79

                          90       100
                  ....*....|....*....|....
gi 1081115599  79 SSYVNKDGEKVYTTEILGKRIILL 102
Cdd:pfam00436  80 RKYEDQEGQKRYVTEIVADEVQFL 103
SSB_OBF cd04496
SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs ...
 5-102 2.37e-23

SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart at forks that have stalled at sites of DNA damage. It also plays a role in the assembly of primosome during replication initiation at the bacteriophage phiX174 origin. PriB physically interacts with SSB and binds ssDNA with high affinity.


Pssm-ID: 239942  Cd Length: 100  Bit Score: 87.28  E-value: 2.37e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081115599   5 VSLSGRIAKEIKVFENEKNRVGV-FTLAVQRPFKNKED-EYETDFIRIVVFNYNVEILEKYTDKGSLIGVEGRVQTSSYV 82
Cdd:cd04496     1 VILIGRLGKDPELRYTPSGTPVArFSLAVNRRRKDRDEeEEETDWIRVVAFGKLAENAAKYLKKGDLVYVEGRLRTRSWE 80

                          90       100
                  ....*....|....*....|
gi 1081115599  83 NKDGEKVYTTEILGKRIILL 102
Cdd:cd04496    81 DKDGQKRYGTEVVADRIEFL 100
PRK07274 PRK07274
single-stranded DNA-binding protein; Provisional
 1-127 1.10e-22

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180914  Cd Length: 131  Bit Score: 86.74  E-value: 1.10e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081115599   1 MFNNVSLSGRI--AKEIKVFENEKNRVGVfTLAVQRPFKNKEDEYETDFIRIVVFNYNVEILEKYTDKGSLIGVEGRVQT 78
Cdd:PRK07274    1 MYNKVILIGRLtaTPELVKTANDKSVARV-TLAVNRRFKNQNGEREADFINVVLWGKLAETLASYASKGSLISIDGELRT 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1081115599  79 SSYvNKDGEKVYTTEILGKRIILLETKEQREKRKGNKELEKVDGYSEDE 127
Cdd:PRK07274   80 RKY-EKDGQTHYVTEVLCQSFQLLESRAQRAMRENNVGNDLADLVLEEE 127
PRK06751 PRK06751
single-stranded DNA-binding protein; Provisional
 1-145 7.91e-22

single-stranded DNA-binding protein; Provisional


Pssm-ID: 168659 [Multi-domain]  Cd Length: 173  Bit Score: 85.62  E-value: 7.91e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081115599   1 MFNNVSLSGRIAKEIKV-FENEKNRVGVFTLAVQRPFKNKEDEYETDFIRIVVFNYNVEILEKYTDKGSLIGVEGRVQTS 79
Cdd:PRK06751    1 MMNRVILVGRLTKDPDLrYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081115599  80 SYVNKDGEKVYTTEILGKRIILLETK----EQR----------------------EKRKGNKELEKVDGYSEDEnDSYDN 133
Cdd:PRK06751   81 NYEGQDGKRVYVTEVLAESVQFLEPRngggEQRgsfnqqpsgagfgnqssnpfgqSSNSGNQGNQGNSGFTKND-DPFSN 159

                         170
                  ....*....|....
gi 1081115599 134 Y--LANIQDDDLPF 145
Cdd:PRK06751  160 VgqPIDISDDDLPF 173
PRK06752 PRK06752
single-stranded DNA-binding protein; Validated
 1-107 1.88e-19

single-stranded DNA-binding protein; Validated


Pssm-ID: 168660  Cd Length: 112  Bit Score: 77.77  E-value: 1.88e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081115599   1 MFNNVSLSGRIAKEIKVFENEKN----RVGVftlAVQRPFKNKEDEYETDFIRIVVFNYNVEILEKYTDKGSLIGVEGRV 76
Cdd:PRK06752    1 MMNRVVLIGRLTKEPELYYTKQGvayaRVCV---AVNRGFRNSLGEQQVDFINCVVWRKSAENVTEYCTKGSLVGITGRI 77

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1081115599  77 QTSSYVNKDGEKVYTTEILGKRIILLETKEQ 107
Cdd:PRK06752   78 HTRNYEDDQGKRIYITEVVIESITFLERRRE 108
PRK06642 PRK06642
single-stranded DNA-binding protein; Provisional
 2-145 1.77e-10

single-stranded DNA-binding protein; Provisional


Pssm-ID: 135984  Cd Length: 152  Bit Score: 55.50  E-value: 1.77e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081115599   2 FNNVSLSGRIAKEIKV-FENEKNRVGVFTLAVQRPFKNK---EDEYETDFIRIVVFNYN-VEILEKYTDKGSLIGVEGRV 76
Cdd:PRK06642    5 LNKVILIGNVGRDPEIrTTGEGKKIINLSLATTETWKDRitsERKERTEWHRVVIFSEGlVSVVERYVTKGSKLYIEGSL 84

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1081115599  77 QTSSYVNKDGEKVYTTEIL----GKRIILLETKEQREKRKGNKELEKvdGYSEDENDSYDNylaNIQDDDLPF 145
Cdd:PRK06642   85 QTRKWNDNSGQEKYTTEVVlqnfNSQLILLDSKNSNNHNQDSGHSEY--KHPETKNHSFDH---SDLDDEIPF 152
PRK06863 PRK06863
single-stranded DNA-binding protein; Provisional
 37-145 2.91e-09

single-stranded DNA-binding protein; Provisional


Pssm-ID: 136097 [Multi-domain]  Cd Length: 168  Bit Score: 52.66  E-value: 2.91e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081115599  37 KNKEDEYE-TDFIRIVVFNYNVEILEKYTDKGSLIGVEGRVQTSSYVNKDGEKVYTTEILGKRIILLETKEQREKRK-GN 114
Cdd:PRK06863   42 KNTGERREvTEWHRIVFYRRQAEVAGEYLRKGSQVYVEGRLKTRKWQDQNGQDRYTTEIQGDVLQMLGGRNQRNAGGyGN 121

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1081115599 115 KELEKVDGYSEDENDSYDNYLANIQ----------------DDDLPF 145
Cdd:PRK06863  122 SGPAPQQSYQAGQTNNGNSQQASRPapqqaapqaeppmdgfDDDIPF 168
PRK05733 PRK05733
single-stranded DNA-binding protein; Provisional
 3-95 1.16e-08

single-stranded DNA-binding protein; Provisional


Pssm-ID: 235585 [Multi-domain]  Cd Length: 172  Bit Score: 51.08  E-value: 1.16e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081115599   3 NNVSLSGRIAK--EIKVFENeKNRVGVFTLAVQRPFKNKED---EYETDFIRIVVFNYNVEILEKYTDKGSLIGVEGRVQ 77
Cdd:PRK05733    6 NKVILVGTCGQdpEVRYLPN-GNAVTNLSLATSEQWTDKQSgqkVERTEWHRVSLFGKVAEIAGEYLRKGSQVYIEGKLQ 84

                          90
                  ....*....|....*...
gi 1081115599  78 TSSYvNKDGEKVYTTEIL 95
Cdd:PRK05733   85 TREW-EKDGIKRYTTEIV 101
PRK08486 PRK08486
single-stranded DNA-binding protein; Provisional
 1-137 1.85e-08

single-stranded DNA-binding protein; Provisional


Pssm-ID: 236275 [Multi-domain]  Cd Length: 182  Bit Score: 50.61  E-value: 1.85e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081115599   1 MFNNVSLSGRIAKEIKV-FENEKNRVGVFTLAVQRPFK--NKEDEYETDFIRIVVFNYNVEILEKYTDKGSLIGVEGRVQ 77
Cdd:PRK08486    1 MFNKVILVGNLTRDVELrYLPSGSAIATIGLATSRRFKkqDGEKGEEVCFIDIRLFGRTAEIANQYLSKGSKVLIEGRLT 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081115599  78 TSSYVNKDGEKvytteiLGKRIILLETKEQREKRKGNKELEKVDGYSEDENdSYDNYLAN 137
Cdd:PRK08486   81 FESWMDQNGQK------RSKHTITAESMQMLDSKSDNPQANAMQDNSFHEN-FNNNYPGN 133
PRK06958 PRK06958
single-stranded DNA-binding protein; Provisional
 30-102 2.50e-07

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180777 [Multi-domain]  Cd Length: 182  Bit Score: 47.48  E-value: 2.50e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1081115599  30 LAVQRPFKNK---EDEYETDFIRIVVFNYNVEILEKYTDKGSLIGVEGRVQTSSYVNKDGEKVYTTEILGKRIILL 102
Cdd:PRK06958   33 LATTDRYKDKasgEFKEATEWHRVAFFGRLAEIVGEYLKKGSSVYIEGRIRTRKWQGQDGQDRYSTEIVADQMQML 108
PRK09010 PRK09010
single-stranded DNA-binding protein; Provisional
 3-95 4.68e-07

single-stranded DNA-binding protein; Provisional


Pssm-ID: 236362 [Multi-domain]  Cd Length: 177  Bit Score: 46.76  E-value: 4.68e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081115599   3 NNVSLSGRIAK--EIKVFENeKNRVGVFTLAVQRPFKNK---EDEYETDFIRIVVFNYNVEILEKYTDKGSLIGVEGRVQ 77
Cdd:PRK09010    7 NKVILVGNLGQdpEVRYMPN-GGAVANITLATSESWRDKqtgEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYIEGQLR 85

                          90
                  ....*....|....*...
gi 1081115599  78 TSSYVNKDGEKVYTTEIL 95
Cdd:PRK09010   86 TRKWTDQSGQDRYTTEVV 103
PRK07459 PRK07459
single-stranded DNA-binding protein; Provisional
 3-109 7.57e-07

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180986  Cd Length: 121  Bit Score: 45.06  E-value: 7.57e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081115599   3 NNVSLSGRIAK--EIKVFENeKNRVGVFTLAVQRPFKNKEdeyeTDFIRIVVFNYNVEILEKYTDKGSLIGVEGRVQTSS 80
Cdd:PRK07459    4 NSVTLVGRAGRdpEVRYFES-GSVVCNLTLAVNRRSRDDE----PDWFNLEIWGKTAQVAADYVKKGSLIGITGSLKFDR 78

                          90       100       110
                  ....*....|....*....|....*....|
gi 1081115599  81 YVNKD-GEKVYTTEILGKRIILLETKEQRE 109
Cdd:PRK07459   79 WTDRNtGEDRSKPVIRVDRLELLGSKRDSE 108
PRK08763 PRK08763
single-stranded DNA-binding protein; Provisional
 29-145 1.32e-06

single-stranded DNA-binding protein; Provisional


Pssm-ID: 181549 [Multi-domain]  Cd Length: 164  Bit Score: 45.32  E-value: 1.32e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081115599  29 TLAVQRPFKNKE--DEYETDFIRIVVFNYNVEILEKYTDKGSLIGVEGRVQTSSYVNKDGEKVYTTEILGKRIILLETKE 106
Cdd:PRK08763   33 SLATTSVRKDREgnTQERTEWHRVKFFGKLGEIAGEYLRKGSQCYIEGSIRYDKFTGQDGQERYVTEIVADEMQMLGGRG 112

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1081115599 107 Q---------REKRKGNKELEKVDGYSEDENDSYDNYLA----NIQDDDLPF 145
Cdd:PRK08763  113 EggggggggiRPQRQPAPRQNNGQDYAPRRQQPAPQQSAppmdDFADDDIPF 164
PRK13732 PRK13732
single-stranded DNA-binding protein; Provisional
 3-97 2.24e-06

single-stranded DNA-binding protein; Provisional


Pssm-ID: 184284 [Multi-domain]  Cd Length: 175  Bit Score: 44.72  E-value: 2.24e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081115599   3 NNVSLSGRIAK--EIKVFENeKNRVGVFTLAVQRPFKNK---EDEYETDFIRIVVFNYNVEILEKYTDKGSLIGVEGRVQ 77
Cdd:PRK13732    7 NKVILVGRLGKdpEVRYIPN-GGAVANLQVATSESWRDKqtgEMREQTEWHRVVLFGKLAEVAGEYLRKGAQVYIEGQLR 85

                          90       100
                  ....*....|....*....|
gi 1081115599  78 TSSYvNKDGEKVYTTEILGK 97
Cdd:PRK13732   86 TRSW-EDNGITRYVTEILVK 104
PRK06293 PRK06293
single-stranded DNA-binding protein; Provisional
 5-145 1.32e-05

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180517 [Multi-domain]  Cd Length: 161  Bit Score: 42.58  E-value: 1.32e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081115599   5 VSLSGRIAKEIKV-FENEKNRVGVFTLAVQRPfKNKEDEyeTDFIRIVVFNYNVEILEKYTDKGSLIGVEGRVQTSSYVN 83
Cdd:PRK06293    4 GYIVGRLGADPEErMTSKGKRVVVLRLGVKSR-VGSKDE--TVWCRCNIWGNRYDKMLPYLKKGSGVIVAGEMSPESYVD 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081115599  84 KDGEKVYTTEIL-------------GKRIILLETKEQR----EKRKGNKELEKVDGYSEDENDSYDNYLANIQ--DDDLP 144
Cdd:PRK06293   81 KDGSPQSSLVVSvdtikfspfgrneGSRQPSAGEDEGQqrgyDNVSIGFEGESLDTESALDKDMYAGYGQDQQyaSEDVP 160


                  .
gi 1081115599 145 F 145
Cdd:PRK06293  161 F 161
PRK06341 PRK06341
single-stranded DNA-binding protein; Provisional
 40-95 1.34e-05

single-stranded DNA-binding protein; Provisional


Pssm-ID: 235782 [Multi-domain]  Cd Length: 166  Bit Score: 42.48  E-value: 1.34e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1081115599  40 EDEYETDFIRIVVFNYNV-EILEKYTDKGSLIGVEGRVQTSSYVNKDGEKVYTTEIL 95
Cdd:PRK06341   47 ERKEKTEWHRVVIFNEGLcKVAEQYLKKGAKVYIEGQLQTRKWTDQSGVERYSTEVV 103
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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